RNA–Protein interactions for RNA: ENST00000462306.5

ERCC3-206, Transcript of ERCC excision repair 3, TFIIH core complex helicase subunit, humanhuman

TSL 1 (best)

Gene ERCC3, Length 963 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3-206ENST00000462306 RIMS2Q9UQ26 1411 aa23.57■■□□□ 1.36
ERCC3-206ENST00000462306 HDGFP51858 240 aaKnown RBP23.52■■□□□ 1.36
ERCC3-206ENST00000462306 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.51■■□□□ 1.35
ERCC3-206ENST00000462306 PLEKHG1Q9ULL1 1385 aa23.5■■□□□ 1.35
ERCC3-206ENST00000462306 PPP1R15AO75807 674 aaPredicted RBP23.48■■□□□ 1.35
ERCC3-206ENST00000462306 NUTM2DQ5VT03 806 aaPredicted RBP23.48■■□□□ 1.35
ERCC3-206ENST00000462306 KIF1BO60333 1816 aa23.47■■□□□ 1.35
ERCC3-206ENST00000462306 FBXO41Q8TF61 875 aa23.47■■□□□ 1.35
ERCC3-206ENST00000462306 SLC26A8Q96RN1 970 aa23.47■■□□□ 1.35
ERCC3-206ENST00000462306 CPS1P31327 1500 aa23.46■■□□□ 1.35
ERCC3-206ENST00000462306 ZNF326Q5BKZ1 582 aaKnown RBP23.46■■□□□ 1.35
ERCC3-206ENST00000462306 ILDR1Q86SU0 546 aaPredicted RBP23.46■■□□□ 1.35
ERCC3-206ENST00000462306 IQSEC2Q5JU85 1478 aa23.45■■□□□ 1.34
ERCC3-206ENST00000462306 CCDC144AA2RUR9 1427 aa23.45■■□□□ 1.34
ERCC3-206ENST00000462306 STRCP1A6NGW2 1772 aa23.45■■□□□ 1.34
ERCC3-206ENST00000462306 BCANQ96GW7 911 aa23.43■■□□□ 1.34
ERCC3-206ENST00000462306 SENP3Q9H4L4 574 aaPredicted RBP23.43■■□□□ 1.34
ERCC3-206ENST00000462306 NEXMIFQ5QGS0 1516 aa23.43■■□□□ 1.34
ERCC3-206ENST00000462306 ADAMTS13Q76LX8 1427 aa23.41■■□□□ 1.34
ERCC3-206ENST00000462306 TBX22Q9Y458 520 aa23.39■■□□□ 1.33
ERCC3-206ENST00000462306 SPATA31E1Q6ZUB1 1445 aa23.39■■□□□ 1.33
ERCC3-206ENST00000462306 RPGRIP1LQ68CZ1 1315 aa23.38■■□□□ 1.33
ERCC3-206ENST00000462306 ANKRD30BQ9BXX2 1392 aa23.38■■□□□ 1.33
ERCC3-206ENST00000462306 KCNA6P17658 529 aa23.37■■□□□ 1.33
ERCC3-206ENST00000462306 LRRC7Q96NW7 1537 aa23.37■■□□□ 1.33
ERCC3-206ENST00000462306 TRIM26Q12899 539 aaPredicted RBP23.36■■□□□ 1.33
ERCC3-206ENST00000462306 SETBP1Q9Y6X0 1596 aa23.35■■□□□ 1.33
ERCC3-206ENST00000462306 NRXN3Q9Y4C0 1643 aa23.35■■□□□ 1.33
ERCC3-206ENST00000462306 DIP2AQ14689 1571 aa23.35■■□□□ 1.33
ERCC3-206ENST00000462306 NWD1Q149M9 1564 aa23.33■■□□□ 1.33
ERCC3-206ENST00000462306 PPLO60437 1756 aa23.32■■□□□ 1.32
ERCC3-206ENST00000462306 VGFO15240 615 aaPredicted RBP23.32■■□□□ 1.32
ERCC3-206ENST00000462306 RGL3Q3MIN7 710 aa23.32■■□□□ 1.32
ERCC3-206ENST00000462306 CHD2O14647 1828 aaKnown RBP23.31■■□□□ 1.32
ERCC3-206ENST00000462306 PIK3R4Q99570 1358 aa23.3■■□□□ 1.32
ERCC3-206ENST00000462306 NKTRP30414 1462 aaKnown RBP23.29■■□□□ 1.32
ERCC3-206ENST00000462306 PTPRUQ92729 1446 aa23.26■■□□□ 1.31
ERCC3-206ENST00000462306 IFT172Q9UG01 1749 aa23.26■■□□□ 1.31
ERCC3-206ENST00000462306 UBAP1LF5GYI3 381 aa23.26■■□□□ 1.31
ERCC3-206ENST00000462306 XIRP1Q702N8 1843 aaKnown RBP23.26■■□□□ 1.31
ERCC3-206ENST00000462306 METP08581 1390 aa23.26■■□□□ 1.31
ERCC3-206ENST00000462306 PROSER2Q86WR7 435 aaPredicted RBP23.25■■□□□ 1.31
ERCC3-206ENST00000462306 TMEM94Q12767 1356 aa23.25■■□□□ 1.31
ERCC3-206ENST00000462306 ADGRF5Q8IZF2 1346 aa23.24■■□□□ 1.31
ERCC3-206ENST00000462306 AMOTL2Q9Y2J4 779 aa23.22■■□□□ 1.31
ERCC3-206ENST00000462306 ALKQ9UM73 1620 aa23.22■■□□□ 1.31
ERCC3-206ENST00000462306 RBM33Q96EV2 1170 aaKnown RBP23.21■■□□□ 1.31
ERCC3-206ENST00000462306 SETD1AO15047 1707 aaKnown RBP23.21■■□□□ 1.31
ERCC3-206ENST00000462306 TOM1O60784 492 aa23.2■■□□□ 1.3
ERCC3-206ENST00000462306 XRN1Q8IZH2 1706 aaKnown RBP23.19■■□□□ 1.3
ERCC3-206ENST00000462306 MYOM2P54296 1465 aa23.17■■□□□ 1.3
ERCC3-206ENST00000462306 NRXN1Q9ULB1 1477 aa23.17■■□□□ 1.3
ERCC3-206ENST00000462306 PIK3C2GO75747 1445 aa23.16■■□□□ 1.3
ERCC3-206ENST00000462306 NCOA3Q9Y6Q9 1424 aa23.15■■□□□ 1.3
ERCC3-206ENST00000462306 DHX57Q6P158 1386 aaKnown RBP23.14■■□□□ 1.3
ERCC3-206ENST00000462306 PIP4K2BP78356 416 aa23.12■■□□□ 1.29
ERCC3-206ENST00000462306 MSH6P52701 1360 aa23.11■■□□□ 1.29
ERCC3-206ENST00000462306 DCAF11Q8TEB1 546 aa23.1■■□□□ 1.29
ERCC3-206ENST00000462306 PRAG1Q86YV5 1406 aa23.09■■□□□ 1.29
ERCC3-206ENST00000462306 C14orf93Q9H972 538 aaKnown RBP23.09■■□□□ 1.29
ERCC3-206ENST00000462306 SCAF1Q9H7N4 1312 aaKnown RBP23.08■■□□□ 1.29
ERCC3-206ENST00000462306 ASXL1Q8IXJ9 1541 aa23.08■■□□□ 1.29
ERCC3-206ENST00000462306 STAC3Q96MF2 364 aa23.08■■□□□ 1.29
ERCC3-206ENST00000462306 PTCH1Q13635 1447 aa23.08■■□□□ 1.28
ERCC3-206ENST00000462306 ROBO2Q9HCK4 1378 aa23.07■■□□□ 1.28
ERCC3-206ENST00000462306 KDM2AQ9Y2K7 1162 aa23.07■■□□□ 1.28
ERCC3-206ENST00000462306 CFAP70Q5T0N1 1121 aa23.06■■□□□ 1.28
ERCC3-206ENST00000462306 TMEM132EQ6IEE7 984 aa23.06■■□□□ 1.28
ERCC3-206ENST00000462306 C14orf37Q86TY3 774 aa23.06■■□□□ 1.28
ERCC3-206ENST00000462306 C19orf44Q9H6X5 657 aa23.06■■□□□ 1.28
ERCC3-206ENST00000462306 SIN3AQ96ST3 1273 aa23.05■■□□□ 1.28
ERCC3-206ENST00000462306 LRPPRCP42704 1394 aaKnown RBP23.03■■□□□ 1.28
ERCC3-206ENST00000462306 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.03■■□□□ 1.28
ERCC3-206ENST00000462306 LAMC1P11047 1609 aa23.03■■□□□ 1.28
ERCC3-206ENST00000462306 TECPR2O15040 1411 aa23.02■■□□□ 1.28
ERCC3-206ENST00000462306 ABCC11Q96J66 1382 aa23.01■■□□□ 1.27
ERCC3-206ENST00000462306 FAM135BQ49AJ0 1406 aa23■■□□□ 1.27
ERCC3-206ENST00000462306 YTHDC2Q9H6S0 1430 aaKnown RBP23■■□□□ 1.27
ERCC3-206ENST00000462306 ADGRL3Q9HAR2 1447 aa23■■□□□ 1.27
ERCC3-206ENST00000462306 PCGF6Q9BYE7 350 aa23■■□□□ 1.27
ERCC3-206ENST00000462306 SLAIN2Q9P270 581 aa23■■□□□ 1.27
ERCC3-206ENST00000462306 STK26Q9P289 416 aa23■■□□□ 1.27
ERCC3-206ENST00000462306 DCCP43146 1447 aa22.99■■□□□ 1.27
ERCC3-206ENST00000462306 HSPA1LP34931 641 aa22.99■■□□□ 1.27
ERCC3-206ENST00000462306 CADPS2Q86UW7 1296 aa22.99■■□□□ 1.27
ERCC3-206ENST00000462306 ATF3P18847 181 aa22.98■■□□□ 1.27
ERCC3-206ENST00000462306 NALCNQ8IZF0 1738 aa22.98■■□□□ 1.27
ERCC3-206ENST00000462306 ADGRB1O14514 1584 aa22.97■■□□□ 1.27
ERCC3-206ENST00000462306 KNDC1Q76NI1 1749 aa22.97■■□□□ 1.27
ERCC3-206ENST00000462306 NEUROD1Q13562 356 aa22.97■■□□□ 1.27
ERCC3-206ENST00000462306 L3MBTL2Q969R5 705 aa22.96■■□□□ 1.27
ERCC3-206ENST00000462306 ROBO1Q9Y6N7 1651 aa22.94■■□□□ 1.26
ERCC3-206ENST00000462306 WAPLQ7Z5K2 1190 aa22.94■■□□□ 1.26
ERCC3-206ENST00000462306 SIRT1Q96EB6 747 aa22.94■■□□□ 1.26
ERCC3-206ENST00000462306 PLEKHH1Q9ULM0 1364 aa22.93■■□□□ 1.26
ERCC3-206ENST00000462306 MST1RQ04912 1400 aa22.91■■□□□ 1.26
ERCC3-206ENST00000462306 DLC1Q96QB1 1528 aa22.89■■□□□ 1.26
ERCC3-206ENST00000462306 KIAA1210Q9ULL0 1709 aa22.88■■□□□ 1.25
ERCC3-206ENST00000462306 BRINP3Q76B58 766 aa22.86■■□□□ 1.25
ERCC3-206ENST00000462306 PRAM1Q96QH2 718 aa22.86■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms