RNA–Protein interactions for RNA: ENST00000462306.5

ERCC3-206, Transcript of ERCC excision repair 3, TFIIH core complex helicase subunit, humanhuman

TSL 1 (best)

Gene ERCC3, Length 963 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3-206ENST00000462306 NISCHQ9Y2I1 1504 aa38.61■■■■□ 3.77
ERCC3-206ENST00000462306 CCDC180Q9P1Z9 1646 aa34.29■■■■□ 3.08
ERCC3-206ENST00000462306 ABCC9O60706 1549 aa33.58■■■□□ 2.97
ERCC3-206ENST00000462306 RB1CC1Q8TDY2 1594 aa32.28■■■□□ 2.76
ERCC3-206ENST00000462306 NACADO15069 1562 aa32.26■■■□□ 2.75
ERCC3-206ENST00000462306 DCAF8L2P0C7V8 631 aa32.22■■■□□ 2.75
ERCC3-206ENST00000462306 ZCCHC6Q5VYS8 1495 aaKnown RBP32.16■■■□□ 2.74
ERCC3-206ENST00000462306 MYO15BQ96JP2 1530 aa32.08■■■□□ 2.73
ERCC3-206ENST00000462306 DCAF1Q9Y4B6 1507 aa31.95■■■□□ 2.7
ERCC3-206ENST00000462306 UNC13AQ9UPW8 1703 aa31.55■■■□□ 2.64
ERCC3-206ENST00000462306 PABPN1Q86U42 306 aaKnown RBP eCLIP31.39■■■□□ 2.62
ERCC3-206ENST00000462306 BICRAQ9NZM4 1560 aa31.35■■■□□ 2.61
ERCC3-206ENST00000462306 SCRIBQ14160 1630 aa31.29■■■□□ 2.6
ERCC3-206ENST00000462306 SHROOM4Q9ULL8 1493 aa30.99■■■□□ 2.55
ERCC3-206ENST00000462306 DNAJC5BQ9UF47 199 aa30.89■■■□□ 2.54
ERCC3-206ENST00000462306 EIF4G1Q04637 1599 aaKnown RBP30.49■■■□□ 2.47
ERCC3-206ENST00000462306 CC2D2AQ9P2K1 1620 aa30.37■■■□□ 2.45
ERCC3-206ENST00000462306 CECR2Q9BXF3 1484 aa30.18■■■□□ 2.42
ERCC3-206ENST00000462306 SMARCA4P51532 1647 aa29.94■■■□□ 2.38
ERCC3-206ENST00000462306 BAZ1AQ9NRL2 1556 aaPredicted RBP29.9■■■□□ 2.38
ERCC3-206ENST00000462306 NCAPD3P42695 1498 aa29.8■■■□□ 2.36
ERCC3-206ENST00000462306 ATAD2BQ9ULI0 1458 aa29.8■■■□□ 2.36
ERCC3-206ENST00000462306 MROH2BQ7Z745 1585 aa29.76■■■□□ 2.35
ERCC3-206ENST00000462306 SMARCA2P51531 1590 aa29.73■■■□□ 2.35
ERCC3-206ENST00000462306 PEG3Q9GZU2 1588 aa29.67■■■□□ 2.34
ERCC3-206ENST00000462306 HMGXB3Q12766 1538 aa29.62■■■□□ 2.33
ERCC3-206ENST00000462306 BAZ1BQ9UIG0 1483 aaKnown RBP29.53■■■□□ 2.32
ERCC3-206ENST00000462306 RSF1Q96T23 1441 aaPredicted RBP29.43■■■□□ 2.3
ERCC3-206ENST00000462306 WIZO95785 1651 aa29.42■■■□□ 2.3
ERCC3-206ENST00000462306 TOP2AP11388 1531 aaKnown RBP29.1■■■□□ 2.25
ERCC3-206ENST00000462306 NESP48681 1621 aa29.08■■■□□ 2.25
ERCC3-206ENST00000462306 LAMC3Q9Y6N6 1575 aa28.97■■■□□ 2.23
ERCC3-206ENST00000462306 ERCC6Q03468 1493 aa28.91■■■□□ 2.22
ERCC3-206ENST00000462306 CADPSQ9ULU8 1353 aa28.91■■■□□ 2.22
ERCC3-206ENST00000462306 CCDC88BA6NC98 1476 aa28.78■■■□□ 2.2
ERCC3-206ENST00000462306 PDS5BQ9NTI5 1447 aa28.78■■■□□ 2.2
ERCC3-206ENST00000462306 CFTRP13569 1480 aa28.75■■■□□ 2.19
ERCC3-206ENST00000462306 KIF21AQ7Z4S6 1674 aa28.7■■■□□ 2.18
ERCC3-206ENST00000462306 SUPT5HO00267 1087 aaKnown RBP28.64■■■□□ 2.18
ERCC3-206ENST00000462306 CUX2O14529 1486 aa28.63■■■□□ 2.17
ERCC3-206ENST00000462306 THOC2Q8NI27 1593 aaKnown RBP28.62■■■□□ 2.17
ERCC3-206ENST00000462306 FANCD2Q9BXW9 1451 aa28.57■■■□□ 2.16
ERCC3-206ENST00000462306 CEP164Q9UPV0 1460 aa28.52■■■□□ 2.16
ERCC3-206ENST00000462306 MRC2Q9UBG0 1479 aa28.49■■■□□ 2.15
ERCC3-206ENST00000462306 PRDM2Q13029 1718 aa28.46■■■□□ 2.15
ERCC3-206ENST00000462306 WDR62O43379 1518 aa28.4■■■□□ 2.14
ERCC3-206ENST00000462306 URB2Q14146 1524 aaKnown RBP28.3■■■□□ 2.12
ERCC3-206ENST00000462306 TOPBP1Q92547 1522 aa28.12■■■□□ 2.09
ERCC3-206ENST00000462306 ABCC8Q09428 1581 aa28.09■■■□□ 2.09
ERCC3-206ENST00000462306 DNMBPQ6XZF7 1577 aa28.07■■■□□ 2.08
ERCC3-206ENST00000462306 IFT140Q96RY7 1462 aa27.94■■■□□ 2.06
ERCC3-206ENST00000462306 CUX1P39880 1505 aa27.92■■■□□ 2.06
ERCC3-206ENST00000462306 POLA1P09884 1462 aaPredicted RBP27.89■■■□□ 2.05
ERCC3-206ENST00000462306 ZNF608Q9ULD9 1512 aaPredicted RBP27.83■■■□□ 2.05
ERCC3-206ENST00000462306 TARBP1Q13395 1621 aaKnown RBP27.82■■■□□ 2.04
ERCC3-206ENST00000462306 FGD5Q6ZNL6 1462 aa27.81■■■□□ 2.04
ERCC3-206ENST00000462306 DNAJC5Q9H3Z4 198 aa27.8■■■□□ 2.04
ERCC3-206ENST00000462306 RAD54L2Q9Y4B4 1467 aa27.77■■■□□ 2.04
ERCC3-206ENST00000462306 SOGA1O94964 1423 aa27.76■■■□□ 2.04
ERCC3-206ENST00000462306 WRNQ14191 1432 aaPredicted RBP eCLIP27.72■■■□□ 2.03
ERCC3-206ENST00000462306 EIF4G3O43432 1585 aaKnown RBP27.69■■■□□ 2.02
ERCC3-206ENST00000462306 AQRO60306 1485 aaKnown RBP eCLIP27.67■■■□□ 2.023e-7■■■■■ 43.2
ERCC3-206ENST00000462306 SYNJ1O43426 1573 aa27.66■■■□□ 2.02
ERCC3-206ENST00000462306 TOP2BQ02880 1626 aa27.66■■■□□ 2.02
ERCC3-206ENST00000462306 BIVM-ERCC5R4GMW8 1640 aa27.65■■■□□ 2.02
ERCC3-206ENST00000462306 TDRD9Q8NDG6 1382 aaKnown RBP27.62■■■□□ 2.01
ERCC3-206ENST00000462306 WDR97A6NE52 1622 aa27.57■■■□□ 2
ERCC3-206ENST00000462306 ABCA10Q8WWZ4 1543 aa27.55■■■□□ 2
ERCC3-206ENST00000462306 OSCARQ8IYS5 282 aa27.46■■□□□ 1.99
ERCC3-206ENST00000462306 GRIN2BQ13224 1484 aa27.44■■□□□ 1.98
ERCC3-206ENST00000462306 GAPVD1Q14C86 1478 aa27.44■■□□□ 1.98
ERCC3-206ENST00000462306 ABCA5Q8WWZ7 1642 aa27.43■■□□□ 1.98
ERCC3-206ENST00000462306 SNAPC4Q5SXM2 1469 aa27.39■■□□□ 1.98
ERCC3-206ENST00000462306 MAGI1Q96QZ7 1491 aaPredicted RBP27.36■■□□□ 1.97
ERCC3-206ENST00000462306 PBRM1Q86U86 1689 aa27.35■■□□□ 1.97
ERCC3-206ENST00000462306 CHD1O14646 1710 aa27.33■■□□□ 1.97
ERCC3-206ENST00000462306 FBLN2P98095 1184 aa27.3■■□□□ 1.96
ERCC3-206ENST00000462306 SYNJ2O15056 1496 aa27.26■■□□□ 1.95
ERCC3-206ENST00000462306 CHMP7Q8WUX9 453 aaPredicted RBP27.24■■□□□ 1.95
ERCC3-206ENST00000462306 ERICH3Q5RHP9 1530 aa27.21■■□□□ 1.95
ERCC3-206ENST00000462306 ADAMTS12P58397 1594 aa27.16■■□□□ 1.94
ERCC3-206ENST00000462306 KIF27Q86VH2 1401 aa27.13■■□□□ 1.93
ERCC3-206ENST00000462306 FHAD1B1AJZ9 1412 aa27.12■■□□□ 1.93
ERCC3-206ENST00000462306 GRIN2AQ12879 1464 aa27.08■■□□□ 1.93
ERCC3-206ENST00000462306 CLASP1Q7Z460 1538 aa27.07■■□□□ 1.92
ERCC3-206ENST00000462306 IGF1RP08069 1367 aa27.06■■□□□ 1.92
ERCC3-206ENST00000462306 TRIM41Q8WV44 630 aa27.05■■□□□ 1.92
ERCC3-206ENST00000462306 ARHGEF11O15085 1522 aa27.01■■□□□ 1.91
ERCC3-206ENST00000462306 RIMBP3CA6NJZ7 1639 aa27.01■■□□□ 1.91
ERCC3-206ENST00000462306 RIMBP3BA6NNM3 1639 aa27.01■■□□□ 1.91
ERCC3-206ENST00000462306 RIMBP3Q9UFD9 1639 aa27.01■■□□□ 1.91
ERCC3-206ENST00000462306 NUP160Q12769 1436 aa26.99■■□□□ 1.91
ERCC3-206ENST00000462306 CEP170Q5SW79 1584 aa26.96■■□□□ 1.91
ERCC3-206ENST00000462306 CUL7Q14999 1698 aa26.93■■□□□ 1.9
ERCC3-206ENST00000462306 RUSC2Q8N2Y8 1516 aa26.93■■□□□ 1.9
ERCC3-206ENST00000462306 CARMIL1Q5VZK9 1371 aa26.87■■□□□ 1.89
ERCC3-206ENST00000462306 ARAP1Q96P48 1450 aa26.81■■□□□ 1.88
ERCC3-206ENST00000462306 SHROOM2Q13796 1616 aa26.77■■□□□ 1.88
ERCC3-206ENST00000462306 CHIC1Q5VXU3 224 aa26.76■■□□□ 1.87
ERCC3-206ENST00000462306 CYB5RLQ6IPT4 315 aa26.76■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms