RNA–Protein interactions for RNA: ENST00000461897.5

COL4A6-204, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best)

Gene COL4A6, Length 1,889 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-204ENST00000461897 STAC3Q96MF2 364 aa17.12■□□□□ 0.33
COL4A6-204ENST00000461897 PPLO60437 1756 aa17.11■□□□□ 0.33
COL4A6-204ENST00000461897 KIAA1210Q9ULL0 1709 aa17.1■□□□□ 0.33
COL4A6-204ENST00000461897 BCANQ96GW7 911 aa17.1■□□□□ 0.33
COL4A6-204ENST00000461897 ST20-MTHFSA0A0A6YYL1 179 aa17.1■□□□□ 0.33
COL4A6-204ENST00000461897 NRXN1Q9ULB1 1477 aa17.09■□□□□ 0.33
COL4A6-204ENST00000461897 PPP6R1Q9UPN7 881 aa17.09■□□□□ 0.33
COL4A6-204ENST00000461897 IQGAP1P46940 1657 aa17.09■□□□□ 0.33
COL4A6-204ENST00000461897 ERVK-7P63135 1459 aa17.07■□□□□ 0.32
COL4A6-204ENST00000461897 ERICH6BQ5W0A0 696 aa17.07■□□□□ 0.32
COL4A6-204ENST00000461897 ADGRF5Q8IZF2 1346 aa17.06■□□□□ 0.32
COL4A6-204ENST00000461897 CHGAP10645 457 aaKnown RBP17.05■□□□□ 0.32
COL4A6-204ENST00000461897 TRHP20396 242 aaPredicted RBP17.05■□□□□ 0.32
COL4A6-204ENST00000461897 DNAJC5Q9H3Z4 198 aa17.05■□□□□ 0.32
COL4A6-204ENST00000461897 ARID4BQ4LE39 1312 aaPredicted RBP17.05■□□□□ 0.32
COL4A6-204ENST00000461897 MYO5BQ9ULV0 1848 aa17.05■□□□□ 0.32
COL4A6-204ENST00000461897 HNRNPUQ00839 825 aaKnown RBP eCLIP17.04■□□□□ 0.32
COL4A6-204ENST00000461897 MLECQ14165 292 aa17.04■□□□□ 0.32
COL4A6-204ENST00000461897 NEXMIFQ5QGS0 1516 aa17.04■□□□□ 0.32
COL4A6-204ENST00000461897 TMEM131LA2VDJ0 1609 aa17.04■□□□□ 0.32
COL4A6-204ENST00000461897 IDI1Q13907 227 aa17.03■□□□□ 0.32
COL4A6-204ENST00000461897 FBXO31Q5XUX0 539 aaPredicted RBP17.03■□□□□ 0.32
COL4A6-204ENST00000461897 ANP32EQ9BTT0 268 aa17.03■□□□□ 0.32
COL4A6-204ENST00000461897 SPATA31D1Q6ZQQ2 1576 aa17.03■□□□□ 0.32
COL4A6-204ENST00000461897 SLC52A1Q9NWF4 448 aa17.03■□□□□ 0.32
COL4A6-204ENST00000461897 PIK3C2GO75747 1445 aa17.02■□□□□ 0.32
COL4A6-204ENST00000461897 PRKRIP1Q9H875 184 aaPredicted RBP17.02■□□□□ 0.32
COL4A6-204ENST00000461897 SCAF11Q99590 1463 aaKnown RBP17.02■□□□□ 0.31
COL4A6-204ENST00000461897 RPGRIP1LQ68CZ1 1315 aa17.01■□□□□ 0.31
COL4A6-204ENST00000461897 TESK2Q96S53 571 aa17.01■□□□□ 0.31
COL4A6-204ENST00000461897 CFAP70Q5T0N1 1121 aa16.99■□□□□ 0.31
COL4A6-204ENST00000461897 RBM19Q9Y4C8 960 aaKnown RBP16.99■□□□□ 0.31
COL4A6-204ENST00000461897 SETBP1Q9Y6X0 1596 aa16.98■□□□□ 0.31
COL4A6-204ENST00000461897 DISP3Q9P2K9 1392 aa16.97■□□□□ 0.31
COL4A6-204ENST00000461897 POLR3GLQ9BT43 218 aa16.97■□□□□ 0.31
COL4A6-204ENST00000461897 ZBED9Q6R2W3 1325 aa16.96■□□□□ 0.31
COL4A6-204ENST00000461897 ADGRB1O14514 1584 aa16.96■□□□□ 0.31
COL4A6-204ENST00000461897 ZMYM3Q14202 1370 aa16.96■□□□□ 0.3
COL4A6-204ENST00000461897 ZFYVE9O95405 1425 aa16.94■□□□□ 0.3
COL4A6-204ENST00000461897 CCDC184Q52MB2 194 aa16.93■□□□□ 0.3
COL4A6-204ENST00000461897 EIF3AQ14152 1382 aaKnown RBP16.93■□□□□ 0.3
COL4A6-204ENST00000461897 ESF1Q9H501 851 aaKnown RBP16.93■□□□□ 0.3
COL4A6-204ENST00000461897 C14orf93Q9H972 538 aaKnown RBP16.93■□□□□ 0.3
COL4A6-204ENST00000461897 MYO3AQ8NEV4 1616 aa16.92■□□□□ 0.3
COL4A6-204ENST00000461897 NUTM2DQ5VT03 806 aaPredicted RBP16.92■□□□□ 0.3
COL4A6-204ENST00000461897 VGFO15240 615 aaPredicted RBP16.91■□□□□ 0.3
COL4A6-204ENST00000461897 A2ML1A8K2U0 1454 aa16.91■□□□□ 0.3
COL4A6-204ENST00000461897 TMF1P82094 1093 aa16.9■□□□□ 0.3
COL4A6-204ENST00000461897 MRS2Q9HD23 443 aa16.88■□□□□ 0.29
COL4A6-204ENST00000461897 FER1L4A9Z1Z3 1794 aa16.88■□□□□ 0.29
COL4A6-204ENST00000461897 PPP4R2Q9NY27 417 aa16.88■□□□□ 0.29
COL4A6-204ENST00000461897 ASXL1Q8IXJ9 1541 aa16.87■□□□□ 0.29
COL4A6-204ENST00000461897 TNRQ92752 1358 aa16.86■□□□□ 0.29
COL4A6-204ENST00000461897 C3P01024 1663 aa16.86■□□□□ 0.29
COL4A6-204ENST00000461897 FANCIQ9NVI1 1328 aa16.86■□□□□ 0.29
COL4A6-204ENST00000461897 ARHGEF28Q8N1W1 1705 aaKnown RBP16.85■□□□□ 0.29
COL4A6-204ENST00000461897 TMEM132EQ6IEE7 984 aa16.85■□□□□ 0.29
COL4A6-204ENST00000461897 STAG3Q9UJ98 1225 aa16.85■□□□□ 0.29
COL4A6-204ENST00000461897 KDM5AP29375 1690 aaKnown RBP16.85■□□□□ 0.29
COL4A6-204ENST00000461897 QRICH2Q9H0J4 1663 aa16.85■□□□□ 0.29
COL4A6-204ENST00000461897 SBNO2Q9Y2G9 1366 aa16.85■□□□□ 0.29
COL4A6-204ENST00000461897 MYOM1P52179 1685 aa16.84■□□□□ 0.29
COL4A6-204ENST00000461897 RIMS2Q9UQ26 1411 aa16.84■□□□□ 0.29
COL4A6-204ENST00000461897 UBR1Q8IWV7 1749 aa16.83■□□□□ 0.29
COL4A6-204ENST00000461897 TRAK1Q9UPV9 953 aa16.82■□□□□ 0.28
COL4A6-204ENST00000461897 SMG6Q86US8 1419 aaKnown RBP16.82■□□□□ 0.28
COL4A6-204ENST00000461897 ALKQ9UM73 1620 aa16.82■□□□□ 0.28
COL4A6-204ENST00000461897 FAM9BQ8IZU0 186 aa16.82■□□□□ 0.28
COL4A6-204ENST00000461897 SETD1AO15047 1707 aaKnown RBP16.81■□□□□ 0.28
COL4A6-204ENST00000461897 CENPJQ9HC77 1338 aaPredicted RBP16.81■□□□□ 0.28
COL4A6-204ENST00000461897 SENP3Q9H4L4 574 aaPredicted RBP16.8■□□□□ 0.28
COL4A6-204ENST00000461897 NRXN3Q9Y4C0 1643 aa16.79■□□□□ 0.28
COL4A6-204ENST00000461897 PER1O15534 1290 aaPredicted RBP16.79■□□□□ 0.28
COL4A6-204ENST00000461897 CEBPAP49715 358 aaPredicted RBP16.79■□□□□ 0.28
COL4A6-204ENST00000461897 CDCA8Q53HL2 280 aa16.79■□□□□ 0.28
COL4A6-204ENST00000461897 NLRP1Q9C000 1473 aa16.79■□□□□ 0.28
COL4A6-204ENST00000461897 RNF123Q5XPI4 1314 aa16.78■□□□□ 0.28
COL4A6-204ENST00000461897 PTPRMP28827 1452 aa16.78■□□□□ 0.28
COL4A6-204ENST00000461897 IRX6P78412 446 aaPredicted RBP16.78■□□□□ 0.28
COL4A6-204ENST00000461897 SLC24A1O60721 1099 aa16.77■□□□□ 0.27
COL4A6-204ENST00000461897 PANK3Q9H999 370 aa16.77■□□□□ 0.27
COL4A6-204ENST00000461897 KTN1Q86UP2 1357 aaKnown RBP16.77■□□□□ 0.27
COL4A6-204ENST00000461897 CNGB1Q14028 1251 aaPredicted RBP16.76■□□□□ 0.27
COL4A6-204ENST00000461897 YTHDC2Q9H6S0 1430 aaKnown RBP16.76■□□□□ 0.27
COL4A6-204ENST00000461897 TMEM2Q9UHN6 1383 aa16.74■□□□□ 0.27
COL4A6-204ENST00000461897 TULP4Q9NRJ4 1543 aa16.74■□□□□ 0.27
COL4A6-204ENST00000461897 MSH5O43196 834 aa16.73■□□□□ 0.27
COL4A6-204ENST00000461897 RIMS1Q86UR5 1692 aaKnown RBP16.73■□□□□ 0.27
COL4A6-204ENST00000461897 PARD3Q8TEW0 1356 aa16.73■□□□□ 0.27
COL4A6-204ENST00000461897 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.73■□□□□ 0.27
COL4A6-204ENST00000461897 NUDCQ9Y266 331 aa16.72■□□□□ 0.27
COL4A6-204ENST00000461897 STK26Q9P289 416 aa16.71■□□□□ 0.27
COL4A6-204ENST00000461897 ADAMTSL3P82987 1691 aa16.71■□□□□ 0.27
COL4A6-204ENST00000461897 LRPPRCP42704 1394 aaKnown RBP16.71■□□□□ 0.27
COL4A6-204ENST00000461897 RALBP1Q15311 655 aa16.71■□□□□ 0.27
COL4A6-204ENST00000461897 PNISRQ8TF01 805 aaKnown RBP16.7■□□□□ 0.26
COL4A6-204ENST00000461897 DLC1Q96QB1 1528 aa16.69■□□□□ 0.26
COL4A6-204ENST00000461897 PLPPR3Q6T4P5 718 aa16.69■□□□□ 0.26
COL4A6-204ENST00000461897 MYBBP1AQ9BQG0 1328 aaKnown RBP16.69■□□□□ 0.26
COL4A6-204ENST00000461897 BRD4O60885 1362 aaPredicted RBP16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms