RNA–Protein interactions for RNA: ENST00000460569.1

UPF2-204, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF2, Length 640 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-204ENST00000460569 ARHGAP23Q9P227 1491 aa14.73□□□□□ -0.05
UPF2-204ENST00000460569 TMEM2Q9UHN6 1383 aa14.73□□□□□ -0.05
UPF2-204ENST00000460569 ZFYVE9O95405 1425 aa14.72□□□□□ -0.05
UPF2-204ENST00000460569 HSPA2P54652 639 aa14.7□□□□□ -0.06
UPF2-204ENST00000460569 MYOM2P54296 1465 aa14.69□□□□□ -0.06
UPF2-204ENST00000460569 SCAF11Q99590 1463 aaKnown RBP14.69□□□□□ -0.06
UPF2-204ENST00000460569 RPGRIP1LQ68CZ1 1315 aa14.69□□□□□ -0.06
UPF2-204ENST00000460569 PPP1R15AO75807 674 aaPredicted RBP14.68□□□□□ -0.06
UPF2-204ENST00000460569 NUTM2DQ5VT03 806 aaPredicted RBP14.68□□□□□ -0.06
UPF2-204ENST00000460569 IQGAP1P46940 1657 aa14.68□□□□□ -0.06
UPF2-204ENST00000460569 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.67□□□□□ -0.06
UPF2-204ENST00000460569 DCAF11Q8TEB1 546 aa14.67□□□□□ -0.06
UPF2-204ENST00000460569 L3MBTL2Q969R5 705 aa14.67□□□□□ -0.06
UPF2-204ENST00000460569 EID1Q9Y6B2 187 aa14.67□□□□□ -0.06
UPF2-204ENST00000460569 STRCQ7RTU9 1775 aa14.67□□□□□ -0.06
UPF2-204ENST00000460569 HDGFP51858 240 aaKnown RBP14.66□□□□□ -0.06
UPF2-204ENST00000460569 TXNDC2Q86VQ3 553 aa14.66□□□□□ -0.06
UPF2-204ENST00000460569 KDM2AQ9Y2K7 1162 aa14.66□□□□□ -0.06
UPF2-204ENST00000460569 LTKP29376 864 aa14.65□□□□□ -0.06
UPF2-204ENST00000460569 ANKLE2Q86XL3 938 aa14.65□□□□□ -0.06
UPF2-204ENST00000460569 NRXN3Q9Y4C0 1643 aa14.64□□□□□ -0.07
UPF2-204ENST00000460569 VGFO15240 615 aaPredicted RBP14.64□□□□□ -0.07
UPF2-204ENST00000460569 SETBP1Q9Y6X0 1596 aa14.64□□□□□ -0.07
UPF2-204ENST00000460569 ADGRF5Q8IZF2 1346 aa14.64□□□□□ -0.07
UPF2-204ENST00000460569 NRXN1Q9ULB1 1477 aa14.63□□□□□ -0.07
UPF2-204ENST00000460569 LAMC1P11047 1609 aa14.63□□□□□ -0.07
UPF2-204ENST00000460569 PLEKHG1Q9ULL1 1385 aa14.63□□□□□ -0.07
UPF2-204ENST00000460569 SENP3Q9H4L4 574 aaPredicted RBP14.63□□□□□ -0.07
UPF2-204ENST00000460569 TIMELESSQ9UNS1 1208 aa14.63□□□□□ -0.07
UPF2-204ENST00000460569 NCKAP5LQ9HCH0 1330 aa14.63□□□□□ -0.07
UPF2-204ENST00000460569 MED14O60244 1454 aa14.63□□□□□ -0.07
UPF2-204ENST00000460569 NPHP4O75161 1426 aaPredicted RBP14.62□□□□□ -0.07
UPF2-204ENST00000460569 PIK3C2GO75747 1445 aa14.62□□□□□ -0.07
UPF2-204ENST00000460569 PRAG1Q86YV5 1406 aa14.62□□□□□ -0.07
UPF2-204ENST00000460569 SETD1AO15047 1707 aaKnown RBP14.61□□□□□ -0.07
UPF2-204ENST00000460569 DIP2AQ14689 1571 aa14.61□□□□□ -0.07
UPF2-204ENST00000460569 BCANQ96GW7 911 aa14.61□□□□□ -0.07
UPF2-204ENST00000460569 STAC3Q96MF2 364 aa14.61□□□□□ -0.07
UPF2-204ENST00000460569 TRPM1Q7Z4N2 1603 aa14.6□□□□□ -0.07
UPF2-204ENST00000460569 KIAA1210Q9ULL0 1709 aa14.6□□□□□ -0.07
UPF2-204ENST00000460569 ALKQ9UM73 1620 aa14.59□□□□□ -0.07
UPF2-204ENST00000460569 ADAMTS13Q76LX8 1427 aa14.58□□□□□ -0.08
UPF2-204ENST00000460569 ASXL1Q8IXJ9 1541 aa14.56□□□□□ -0.08
UPF2-204ENST00000460569 NBPF8Q3BBV2 869 aa14.55□□□□□ -0.08
UPF2-204ENST00000460569 SLC26A8Q96RN1 970 aa14.55□□□□□ -0.08
UPF2-204ENST00000460569 RALGAPBQ86X10 1494 aa14.55□□□□□ -0.08
UPF2-204ENST00000460569 CFAP70Q5T0N1 1121 aa14.54□□□□□ -0.08
UPF2-204ENST00000460569 ZEB1P37275 1124 aaPredicted RBP14.53□□□□□ -0.08
UPF2-204ENST00000460569 ADGRB1O14514 1584 aa14.52□□□□□ -0.08
UPF2-204ENST00000460569 C14orf93Q9H972 538 aaKnown RBP14.52□□□□□ -0.09
UPF2-204ENST00000460569 CHD2O14647 1828 aaKnown RBP14.52□□□□□ -0.09
UPF2-204ENST00000460569 ROCK2O75116 1388 aaKnown RBP14.51□□□□□ -0.09
UPF2-204ENST00000460569 TBX22Q9Y458 520 aa14.51□□□□□ -0.09
UPF2-204ENST00000460569 DMRT2Q9Y5R5 561 aa14.51□□□□□ -0.09
UPF2-204ENST00000460569 KNDC1Q76NI1 1749 aa14.51□□□□□ -0.09
UPF2-204ENST00000460569 XRN1Q8IZH2 1706 aaKnown RBP14.51□□□□□ -0.09
UPF2-204ENST00000460569 METP08581 1390 aa14.5□□□□□ -0.09
UPF2-204ENST00000460569 NWD1Q149M9 1564 aa14.5□□□□□ -0.09
UPF2-204ENST00000460569 NBPF1Q3BBV0 1214 aa14.49□□□□□ -0.09
UPF2-204ENST00000460569 TMEM132EQ6IEE7 984 aa14.49□□□□□ -0.09
UPF2-204ENST00000460569 PIK3R4Q99570 1358 aa14.48□□□□□ -0.09
UPF2-204ENST00000460569 STRCP1A6NGW2 1772 aa14.48□□□□□ -0.09
UPF2-204ENST00000460569 ARHGEF28Q8N1W1 1705 aaKnown RBP14.48□□□□□ -0.09
UPF2-204ENST00000460569 YTHDC2Q9H6S0 1430 aaKnown RBP14.48□□□□□ -0.09
UPF2-204ENST00000460569 PTPRUQ92729 1446 aa14.47□□□□□ -0.09
UPF2-204ENST00000460569 GPRASP1Q5JY77 1395 aa14.47□□□□□ -0.09
UPF2-204ENST00000460569 CPS1P31327 1500 aa14.46□□□□□ -0.09
UPF2-204ENST00000460569 LRPPRCP42704 1394 aaKnown RBP14.46□□□□□ -0.1
UPF2-204ENST00000460569 CARD11Q9BXL7 1154 aa14.45□□□□□ -0.1
UPF2-204ENST00000460569 STK26Q9P289 416 aa14.45□□□□□ -0.1
UPF2-204ENST00000460569 NKTRP30414 1462 aaKnown RBP14.44□□□□□ -0.1
UPF2-204ENST00000460569 ZNF335Q9H4Z2 1342 aaPredicted RBP14.43□□□□□ -0.1
UPF2-204ENST00000460569 TECPR2O15040 1411 aa14.43□□□□□ -0.1
UPF2-204ENST00000460569 PTCH1Q13635 1447 aa14.43□□□□□ -0.1
UPF2-204ENST00000460569 DLC1Q96QB1 1528 aa14.43□□□□□ -0.1
UPF2-204ENST00000460569 AMOTL2Q9Y2J4 779 aa14.43□□□□□ -0.1
UPF2-204ENST00000460569 KCNA6P17658 529 aa14.42□□□□□ -0.1
UPF2-204ENST00000460569 TRAK1Q9UPV9 953 aa14.42□□□□□ -0.1
UPF2-204ENST00000460569 ABCC11Q96J66 1382 aa14.42□□□□□ -0.1
UPF2-204ENST00000460569 QRICH2Q9H0J4 1663 aa14.42□□□□□ -0.1
UPF2-204ENST00000460569 EIF3AQ14152 1382 aaKnown RBP14.41□□□□□ -0.1
UPF2-204ENST00000460569 USP47Q96K76 1375 aa14.4□□□□□ -0.1
UPF2-204ENST00000460569 ROBO2Q9HCK4 1378 aa14.4□□□□□ -0.1
UPF2-204ENST00000460569 FAM135BQ49AJ0 1406 aa14.39□□□□□ -0.11
UPF2-204ENST00000460569 XIRP1Q702N8 1843 aaKnown RBP14.38□□□□□ -0.11
UPF2-204ENST00000460569 NALCNQ8IZF0 1738 aa14.38□□□□□ -0.11
UPF2-204ENST00000460569 LTBP4Q8N2S1 1624 aa14.38□□□□□ -0.11
UPF2-204ENST00000460569 PLEKHH1Q9ULM0 1364 aa14.37□□□□□ -0.11
UPF2-204ENST00000460569 PRAM1Q96QH2 718 aa14.37□□□□□ -0.11
UPF2-204ENST00000460569 POGKQ9P215 609 aa14.37□□□□□ -0.11
UPF2-204ENST00000460569 LRRC7Q96NW7 1537 aa14.36□□□□□ -0.11
UPF2-204ENST00000460569 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.36□□□□□ -0.11
UPF2-204ENST00000460569 PROSER2Q86WR7 435 aaPredicted RBP14.36□□□□□ -0.11
UPF2-204ENST00000460569 CENPJQ9HC77 1338 aaPredicted RBP14.36□□□□□ -0.11
UPF2-204ENST00000460569 EIF4G2P78344 907 aaKnown RBP eCLIP14.35□□□□□ -0.11
UPF2-204ENST00000460569 SAFB2Q14151 953 aaKnown RBP eCLIP14.35□□□□□ -0.11
UPF2-204ENST00000460569 WAPLQ7Z5K2 1190 aa14.35□□□□□ -0.11
UPF2-204ENST00000460569 SIRT1Q96EB6 747 aa14.34□□□□□ -0.11
UPF2-204ENST00000460569 RBM33Q96EV2 1170 aaKnown RBP14.34□□□□□ -0.11
UPF2-204ENST00000460569 ADGRB2O60241 1585 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms