RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 CHGAP10645 457 aaKnown RBP15.7■□□□□ 0.1
UBR4-208ENST00000459947 ZFYVE9O95405 1425 aa15.7■□□□□ 0.1
UBR4-208ENST00000459947 PPP1R15AO75807 674 aaPredicted RBP15.69■□□□□ 0.1
UBR4-208ENST00000459947 PLEKHG1Q9ULL1 1385 aa15.69■□□□□ 0.1
UBR4-208ENST00000459947 IQSEC2Q5JU85 1478 aa15.69■□□□□ 0.1
UBR4-208ENST00000459947 STAC3Q96MF2 364 aa15.68■□□□□ 0.1
UBR4-208ENST00000459947 MYO5BQ9ULV0 1848 aa15.67■□□□□ 0.1
UBR4-208ENST00000459947 CPS1P31327 1500 aa15.67■□□□□ 0.1
UBR4-208ENST00000459947 ZNF326Q5BKZ1 582 aaKnown RBP15.65■□□□□ 0.1
UBR4-208ENST00000459947 ANKRD30BQ9BXX2 1392 aa15.65■□□□□ 0.1
UBR4-208ENST00000459947 PIK3R4Q99570 1358 aa15.64■□□□□ 0.09
UBR4-208ENST00000459947 VGFO15240 615 aaPredicted RBP15.64■□□□□ 0.09
UBR4-208ENST00000459947 NEXMIFQ5QGS0 1516 aa15.63■□□□□ 0.09
UBR4-208ENST00000459947 SETBP1Q9Y6X0 1596 aa15.62■□□□□ 0.09
UBR4-208ENST00000459947 SPATA31E1Q6ZUB1 1445 aa15.62■□□□□ 0.09
UBR4-208ENST00000459947 LTKP29376 864 aa15.62■□□□□ 0.09
UBR4-208ENST00000459947 PPLO60437 1756 aa15.61■□□□□ 0.09
UBR4-208ENST00000459947 TBX22Q9Y458 520 aa15.61■□□□□ 0.09
UBR4-208ENST00000459947 BCANQ96GW7 911 aa15.59■□□□□ 0.09
UBR4-208ENST00000459947 MYOM2P54296 1465 aa15.59■□□□□ 0.09
UBR4-208ENST00000459947 NKTRP30414 1462 aaKnown RBP15.58■□□□□ 0.09
UBR4-208ENST00000459947 NWD1Q149M9 1564 aa15.58■□□□□ 0.08
UBR4-208ENST00000459947 LTBP4Q8N2S1 1624 aa15.58■□□□□ 0.08
UBR4-208ENST00000459947 IFT172Q9UG01 1749 aa15.58■□□□□ 0.08
UBR4-208ENST00000459947 FOXD1Q16676 465 aa15.57■□□□□ 0.08
UBR4-208ENST00000459947 LAMC1P11047 1609 aa15.56■□□□□ 0.08
UBR4-208ENST00000459947 KCNA6P17658 529 aa15.55■□□□□ 0.08
UBR4-208ENST00000459947 CERKQ8TCT0 537 aa15.55■□□□□ 0.08
UBR4-208ENST00000459947 NCOA3Q9Y6Q9 1424 aa15.54■□□□□ 0.08
UBR4-208ENST00000459947 ADAMTS13Q76LX8 1427 aa15.54■□□□□ 0.08
UBR4-208ENST00000459947 DHX57Q6P158 1386 aaKnown RBP15.53■□□□□ 0.08
UBR4-208ENST00000459947 CLSPNQ9HAW4 1339 aa15.53■□□□□ 0.08
UBR4-208ENST00000459947 ZNF335Q9H4Z2 1342 aaPredicted RBP15.51■□□□□ 0.07
UBR4-208ENST00000459947 CHD2O14647 1828 aaKnown RBP15.51■□□□□ 0.07
UBR4-208ENST00000459947 NRXN3Q9Y4C0 1643 aa15.51■□□□□ 0.07
UBR4-208ENST00000459947 NRXN1Q9ULB1 1477 aa15.51■□□□□ 0.07
UBR4-208ENST00000459947 PRAG1Q86YV5 1406 aa15.51■□□□□ 0.07
UBR4-208ENST00000459947 RGL3Q3MIN7 710 aa15.48■□□□□ 0.07
UBR4-208ENST00000459947 ALKQ9UM73 1620 aa15.48■□□□□ 0.07
UBR4-208ENST00000459947 SLC26A8Q96RN1 970 aa15.48■□□□□ 0.07
UBR4-208ENST00000459947 PIK3C2GO75747 1445 aa15.48■□□□□ 0.07
UBR4-208ENST00000459947 XRN1Q8IZH2 1706 aaKnown RBP15.47■□□□□ 0.07
UBR4-208ENST00000459947 LRRC7Q96NW7 1537 aa15.46■□□□□ 0.07
UBR4-208ENST00000459947 SETD1AO15047 1707 aaKnown RBP15.45■□□□□ 0.06
UBR4-208ENST00000459947 FBXO41Q8TF61 875 aa15.45■□□□□ 0.06
UBR4-208ENST00000459947 KIAA1210Q9ULL0 1709 aa15.45■□□□□ 0.06
UBR4-208ENST00000459947 PTCH1Q13635 1447 aa15.45■□□□□ 0.06
UBR4-208ENST00000459947 PCGF6Q9BYE7 350 aa15.44■□□□□ 0.06
UBR4-208ENST00000459947 NUTM2DQ5VT03 806 aaPredicted RBP15.44■□□□□ 0.06
UBR4-208ENST00000459947 PROSER2Q86WR7 435 aaPredicted RBP15.44■□□□□ 0.06
UBR4-208ENST00000459947 STRCP1A6NGW2 1772 aa15.44■□□□□ 0.06
UBR4-208ENST00000459947 KNDC1Q76NI1 1749 aa15.44■□□□□ 0.06
UBR4-208ENST00000459947 C14orf93Q9H972 538 aaKnown RBP15.43■□□□□ 0.06
UBR4-208ENST00000459947 ADGRF5Q8IZF2 1346 aa15.42■□□□□ 0.06
UBR4-208ENST00000459947 LRPPRCP42704 1394 aaKnown RBP15.42■□□□□ 0.06
UBR4-208ENST00000459947 TOM1O60784 492 aa15.42■□□□□ 0.06
UBR4-208ENST00000459947 SIRT1Q96EB6 747 aa15.42■□□□□ 0.06
UBR4-208ENST00000459947 TIMELESSQ9UNS1 1208 aa15.42■□□□□ 0.06
UBR4-208ENST00000459947 TECPR2O15040 1411 aa15.41■□□□□ 0.06
UBR4-208ENST00000459947 MSH6P52701 1360 aa15.41■□□□□ 0.06
UBR4-208ENST00000459947 DCCP43146 1447 aa15.41■□□□□ 0.06
UBR4-208ENST00000459947 DCAF11Q8TEB1 546 aa15.41■□□□□ 0.06
UBR4-208ENST00000459947 AMOTL2Q9Y2J4 779 aa15.41■□□□□ 0.06
UBR4-208ENST00000459947 TONSLQ96HA7 1378 aa15.4■□□□□ 0.06
UBR4-208ENST00000459947 TMEM94Q12767 1356 aa15.4■□□□□ 0.06
UBR4-208ENST00000459947 ABCC11Q96J66 1382 aa15.4■□□□□ 0.06
UBR4-208ENST00000459947 DLC1Q96QB1 1528 aa15.39■□□□□ 0.05
UBR4-208ENST00000459947 METP08581 1390 aa15.39■□□□□ 0.05
UBR4-208ENST00000459947 FAM135BQ49AJ0 1406 aa15.38■□□□□ 0.05
UBR4-208ENST00000459947 PTPRUQ92729 1446 aa15.38■□□□□ 0.05
UBR4-208ENST00000459947 YTHDC2Q9H6S0 1430 aaKnown RBP15.36■□□□□ 0.05
UBR4-208ENST00000459947 ADGRL3Q9HAR2 1447 aa15.35■□□□□ 0.05
UBR4-208ENST00000459947 XIRP1Q702N8 1843 aaKnown RBP15.35■□□□□ 0.05
UBR4-208ENST00000459947 UBAP1LF5GYI3 381 aa15.35■□□□□ 0.05
UBR4-208ENST00000459947 C14orf37Q86TY3 774 aa15.35■□□□□ 0.05
UBR4-208ENST00000459947 KDM2AQ9Y2K7 1162 aa15.35■□□□□ 0.05
UBR4-208ENST00000459947 CADPS2Q86UW7 1296 aa15.34■□□□□ 0.05
UBR4-208ENST00000459947 C19orf44Q9H6X5 657 aa15.34■□□□□ 0.05
UBR4-208ENST00000459947 ASXL1Q8IXJ9 1541 aa15.34■□□□□ 0.05
UBR4-208ENST00000459947 NEUROD1Q13562 356 aa15.33■□□□□ 0.05
UBR4-208ENST00000459947 L3MBTL2Q969R5 705 aa15.33■□□□□ 0.04
UBR4-208ENST00000459947 ADGRB1O14514 1584 aa15.32■□□□□ 0.04
UBR4-208ENST00000459947 ATF3P18847 181 aa15.32■□□□□ 0.04
UBR4-208ENST00000459947 SIN3AQ96ST3 1273 aa15.32■□□□□ 0.04
UBR4-208ENST00000459947 EIF3AQ14152 1382 aaKnown RBP15.32■□□□□ 0.04
UBR4-208ENST00000459947 CFAP70Q5T0N1 1121 aa15.31■□□□□ 0.04
UBR4-208ENST00000459947 CDC42BPGQ6DT37 1551 aa15.31■□□□□ 0.04
UBR4-208ENST00000459947 CCER1Q8TC90 406 aaPredicted RBP15.29■□□□□ 0.04
UBR4-208ENST00000459947 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.29■□□□□ 0.04
UBR4-208ENST00000459947 ROBO2Q9HCK4 1378 aa15.29■□□□□ 0.04
UBR4-208ENST00000459947 TRPM1Q7Z4N2 1603 aa15.28■□□□□ 0.04
UBR4-208ENST00000459947 SENP3Q9H4L4 574 aaPredicted RBP15.28■□□□□ 0.04
UBR4-208ENST00000459947 NALCNQ8IZF0 1738 aa15.27■□□□□ 0.03
UBR4-208ENST00000459947 ADGRB2O60241 1585 aa15.27■□□□□ 0.03
UBR4-208ENST00000459947 RALGAPBQ86X10 1494 aa15.26■□□□□ 0.03
UBR4-208ENST00000459947 POGKQ9P215 609 aa15.26■□□□□ 0.03
UBR4-208ENST00000459947 GPRASP1Q5JY77 1395 aa15.25■□□□□ 0.03
UBR4-208ENST00000459947 STK26Q9P289 416 aa15.25■□□□□ 0.03
UBR4-208ENST00000459947 SLC24A1O60721 1099 aa15.25■□□□□ 0.03
UBR4-208ENST00000459947 TMEM132EQ6IEE7 984 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms