RNA–Protein interactions for RNA: ENST00000454852.6

TRAF4-206, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 672 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-206ENST00000454852 THEMISQ8N1K5 641 aaPredicted RBP16.23■□□□□ 0.19
TRAF4-206ENST00000454852 PLPPR3Q6T4P5 718 aa16.22■□□□□ 0.19
TRAF4-206ENST00000454852 PPP1R15AO75807 674 aaPredicted RBP16.21■□□□□ 0.19
TRAF4-206ENST00000454852 RGL3Q3MIN7 710 aa16.21■□□□□ 0.19
TRAF4-206ENST00000454852 STAG3Q9UJ98 1225 aa16.21■□□□□ 0.19
TRAF4-206ENST00000454852 RIMS2Q9UQ26 1411 aa16.2■□□□□ 0.18
TRAF4-206ENST00000454852 CHGAP10645 457 aaKnown RBP16.2■□□□□ 0.18
TRAF4-206ENST00000454852 LMTK3Q96Q04 1460 aa16.2■□□□□ 0.18
TRAF4-206ENST00000454852 HDGFP51858 240 aaKnown RBP16.19■□□□□ 0.18
TRAF4-206ENST00000454852 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.19■□□□□ 0.18
TRAF4-206ENST00000454852 PRAG1Q86YV5 1406 aa16.19■□□□□ 0.18
TRAF4-206ENST00000454852 VGFO15240 615 aaPredicted RBP16.18■□□□□ 0.18
TRAF4-206ENST00000454852 ZNF326Q5BKZ1 582 aaKnown RBP16.18■□□□□ 0.18
TRAF4-206ENST00000454852 DCAF11Q8TEB1 546 aa16.18■□□□□ 0.18
TRAF4-206ENST00000454852 PIK3C2GO75747 1445 aa16.17■□□□□ 0.18
TRAF4-206ENST00000454852 KIAA1210Q9ULL0 1709 aa16.16■□□□□ 0.18
TRAF4-206ENST00000454852 SETBP1Q9Y6X0 1596 aa16.15■□□□□ 0.18
TRAF4-206ENST00000454852 SCAF11Q99590 1463 aaKnown RBP16.15■□□□□ 0.18
TRAF4-206ENST00000454852 LAMC1P11047 1609 aa16.14■□□□□ 0.17
TRAF4-206ENST00000454852 MED14O60244 1454 aa16.14■□□□□ 0.17
TRAF4-206ENST00000454852 ADGRF5Q8IZF2 1346 aa16.14■□□□□ 0.17
TRAF4-206ENST00000454852 PLEKHG1Q9ULL1 1385 aa16.13■□□□□ 0.17
TRAF4-206ENST00000454852 TRPM1Q7Z4N2 1603 aa16.13■□□□□ 0.17
TRAF4-206ENST00000454852 RALGAPBQ86X10 1494 aa16.12■□□□□ 0.17
TRAF4-206ENST00000454852 POLR1AO95602 1720 aaPredicted RBP16.12■□□□□ 0.17
TRAF4-206ENST00000454852 LTKP29376 864 aa16.12■□□□□ 0.17
TRAF4-206ENST00000454852 NBPF8Q3BBV2 869 aa16.12■□□□□ 0.17
TRAF4-206ENST00000454852 EID1Q9Y6B2 187 aa16.12■□□□□ 0.17
TRAF4-206ENST00000454852 NRXN3Q9Y4C0 1643 aa16.12■□□□□ 0.17
TRAF4-206ENST00000454852 TXNDC2Q86VQ3 553 aa16.11■□□□□ 0.17
TRAF4-206ENST00000454852 KDM2AQ9Y2K7 1162 aa16.11■□□□□ 0.17
TRAF4-206ENST00000454852 ANKLE2Q86XL3 938 aa16.1■□□□□ 0.17
TRAF4-206ENST00000454852 C14orf93Q9H972 538 aaKnown RBP16.1■□□□□ 0.17
TRAF4-206ENST00000454852 GPRASP1Q5JY77 1395 aa16.1■□□□□ 0.17
TRAF4-206ENST00000454852 DIP2AQ14689 1571 aa16.09■□□□□ 0.17
TRAF4-206ENST00000454852 SETD1AO15047 1707 aaKnown RBP16.09■□□□□ 0.17
TRAF4-206ENST00000454852 ADAMTS13Q76LX8 1427 aa16.08■□□□□ 0.16
TRAF4-206ENST00000454852 ALKQ9UM73 1620 aa16.08■□□□□ 0.16
TRAF4-206ENST00000454852 IQGAP1P46940 1657 aa16.08■□□□□ 0.16
TRAF4-206ENST00000454852 ADGRB1O14514 1584 aa16.07■□□□□ 0.16
TRAF4-206ENST00000454852 NPHP4O75161 1426 aaPredicted RBP16.05■□□□□ 0.16
TRAF4-206ENST00000454852 NUTM2DQ5VT03 806 aaPredicted RBP16.05■□□□□ 0.16
TRAF4-206ENST00000454852 STRCQ7RTU9 1775 aa16.05■□□□□ 0.16
TRAF4-206ENST00000454852 TBX22Q9Y458 520 aa16.04■□□□□ 0.16
TRAF4-206ENST00000454852 ASXL1Q8IXJ9 1541 aa16.04■□□□□ 0.16
TRAF4-206ENST00000454852 PIK3R4Q99570 1358 aa16.03■□□□□ 0.16
TRAF4-206ENST00000454852 CFAP70Q5T0N1 1121 aa16.03■□□□□ 0.16
TRAF4-206ENST00000454852 HSPA2P54652 639 aa16.02■□□□□ 0.16
TRAF4-206ENST00000454852 ROCK2O75116 1388 aaKnown RBP16.01■□□□□ 0.15
TRAF4-206ENST00000454852 NCKAP5LQ9HCH0 1330 aa16■□□□□ 0.15
TRAF4-206ENST00000454852 NBPF1Q3BBV0 1214 aa16■□□□□ 0.15
TRAF4-206ENST00000454852 TECPR2O15040 1411 aa15.99■□□□□ 0.15
TRAF4-206ENST00000454852 KNDC1Q76NI1 1749 aa15.98■□□□□ 0.15
TRAF4-206ENST00000454852 DLC1Q96QB1 1528 aa15.98■□□□□ 0.15
TRAF4-206ENST00000454852 METP08581 1390 aa15.98■□□□□ 0.15
TRAF4-206ENST00000454852 LRPPRCP42704 1394 aaKnown RBP15.98■□□□□ 0.15
TRAF4-206ENST00000454852 YTHDC2Q9H6S0 1430 aaKnown RBP15.97■□□□□ 0.15
TRAF4-206ENST00000454852 ABCC11Q96J66 1382 aa15.97■□□□□ 0.15
TRAF4-206ENST00000454852 CARD11Q9BXL7 1154 aa15.96■□□□□ 0.15
TRAF4-206ENST00000454852 XRN1Q8IZH2 1706 aaKnown RBP15.96■□□□□ 0.15
TRAF4-206ENST00000454852 NWD1Q149M9 1564 aa15.96■□□□□ 0.14
TRAF4-206ENST00000454852 SIRT1Q96EB6 747 aa15.95■□□□□ 0.14
TRAF4-206ENST00000454852 DMRT2Q9Y5R5 561 aa15.95■□□□□ 0.14
TRAF4-206ENST00000454852 CHD2O14647 1828 aaKnown RBP15.95■□□□□ 0.14
TRAF4-206ENST00000454852 CPS1P31327 1500 aa15.94■□□□□ 0.14
TRAF4-206ENST00000454852 SLC26A8Q96RN1 970 aa15.94■□□□□ 0.14
TRAF4-206ENST00000454852 PTPRUQ92729 1446 aa15.94■□□□□ 0.14
TRAF4-206ENST00000454852 USP47Q96K76 1375 aa15.93■□□□□ 0.14
TRAF4-206ENST00000454852 TMEM132EQ6IEE7 984 aa15.93■□□□□ 0.14
TRAF4-206ENST00000454852 AEBP2Q6ZN18 517 aaPredicted RBP15.93■□□□□ 0.14
TRAF4-206ENST00000454852 BCANQ96GW7 911 aa15.93■□□□□ 0.14
TRAF4-206ENST00000454852 ARHGEF28Q8N1W1 1705 aaKnown RBP15.93■□□□□ 0.14
TRAF4-206ENST00000454852 PTCH1Q13635 1447 aa15.93■□□□□ 0.14
TRAF4-206ENST00000454852 FAM135BQ49AJ0 1406 aa15.93■□□□□ 0.14
TRAF4-206ENST00000454852 EIF3AQ14152 1382 aaKnown RBP15.92■□□□□ 0.14
TRAF4-206ENST00000454852 EIF4G2P78344 907 aaKnown RBP eCLIP15.91■□□□□ 0.14
TRAF4-206ENST00000454852 SBNO2Q9Y2G9 1366 aa15.9■□□□□ 0.14
TRAF4-206ENST00000454852 KCNA6P17658 529 aa15.89■□□□□ 0.13
TRAF4-206ENST00000454852 NKTRP30414 1462 aaKnown RBP15.89■□□□□ 0.13
TRAF4-206ENST00000454852 AMOTL2Q9Y2J4 779 aa15.88■□□□□ 0.13
TRAF4-206ENST00000454852 SLC24A1O60721 1099 aa15.86■□□□□ 0.13
TRAF4-206ENST00000454852 HSPA5P11021 654 aaKnown RBP15.86■□□□□ 0.13
TRAF4-206ENST00000454852 SENP3Q9H4L4 574 aaPredicted RBP15.86■□□□□ 0.13
TRAF4-206ENST00000454852 TRAK1Q9UPV9 953 aa15.86■□□□□ 0.13
TRAF4-206ENST00000454852 ROBO2Q9HCK4 1378 aa15.86■□□□□ 0.13
TRAF4-206ENST00000454852 TESK2Q96S53 571 aa15.85■□□□□ 0.13
TRAF4-206ENST00000454852 CENPJQ9HC77 1338 aaPredicted RBP15.85■□□□□ 0.13
TRAF4-206ENST00000454852 STRCP1A6NGW2 1772 aa15.85■□□□□ 0.13
TRAF4-206ENST00000454852 QRICH2Q9H0J4 1663 aa15.84■□□□□ 0.13
TRAF4-206ENST00000454852 ST20-MTHFSA0A0A6YYL1 179 aa15.84■□□□□ 0.13
TRAF4-206ENST00000454852 NCOA3Q9Y6Q9 1424 aa15.84■□□□□ 0.13
TRAF4-206ENST00000454852 STK26Q9P289 416 aa15.83■□□□□ 0.12
TRAF4-206ENST00000454852 ADGRB2O60241 1585 aa15.83■□□□□ 0.12
TRAF4-206ENST00000454852 PRAM1Q96QH2 718 aa15.82■□□□□ 0.12
TRAF4-206ENST00000454852 PLEKHH1Q9ULM0 1364 aa15.81■□□□□ 0.12
TRAF4-206ENST00000454852 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.8■□□□□ 0.12
TRAF4-206ENST00000454852 PUS7Q96PZ0 661 aaKnown RBP15.79■□□□□ 0.12
TRAF4-206ENST00000454852 POGKQ9P215 609 aa15.79■□□□□ 0.12
TRAF4-206ENST00000454852 WAPLQ7Z5K2 1190 aa15.78■□□□□ 0.12
TRAF4-206ENST00000454852 LTBP4Q8N2S1 1624 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms