RNA–Protein interactions for RNA: ENST00000439724.7

SMAD3-202, Transcript of SMAD family member 3, humanhuman

TSL 1 (best) BASIC

Gene SMAD3, Length 1,530 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-202ENST00000439724 SYNMO15061 1565 aa16.22■□□□□ 0.19
SMAD3-202ENST00000439724 POLR3GLQ9BT43 218 aa16.22■□□□□ 0.19
SMAD3-202ENST00000439724 DISP3Q9P2K9 1392 aa16.19■□□□□ 0.18
SMAD3-202ENST00000439724 PREX1Q8TCU6 1659 aa16.18■□□□□ 0.18
SMAD3-202ENST00000439724 SETBP1Q9Y6X0 1596 aa16.18■□□□□ 0.18
SMAD3-202ENST00000439724 ARHGEF40Q8TER5 1519 aa16.18■□□□□ 0.18
SMAD3-202ENST00000439724 KTN1Q86UP2 1357 aaKnown RBP16.18■□□□□ 0.18
SMAD3-202ENST00000439724 RPGRIP1LQ68CZ1 1315 aa16.18■□□□□ 0.18
SMAD3-202ENST00000439724 TMF1P82094 1093 aa16.18■□□□□ 0.18
SMAD3-202ENST00000439724 EIF3AQ14152 1382 aaKnown RBP16.17■□□□□ 0.18
SMAD3-202ENST00000439724 ADGRF5Q8IZF2 1346 aa16.16■□□□□ 0.18
SMAD3-202ENST00000439724 MYO3AQ8NEV4 1616 aa16.16■□□□□ 0.18
SMAD3-202ENST00000439724 CCDC184Q52MB2 194 aa16.15■□□□□ 0.18
SMAD3-202ENST00000439724 PIK3C2GO75747 1445 aa16.15■□□□□ 0.18
SMAD3-202ENST00000439724 MRS2Q9HD23 443 aa16.14■□□□□ 0.18
SMAD3-202ENST00000439724 PPP6R1Q9UPN7 881 aa16.14■□□□□ 0.18
SMAD3-202ENST00000439724 NEXMIFQ5QGS0 1516 aa16.13■□□□□ 0.17
SMAD3-202ENST00000439724 CFAP70Q5T0N1 1121 aa16.12■□□□□ 0.17
SMAD3-202ENST00000439724 CHGAP10645 457 aaKnown RBP16.11■□□□□ 0.17
SMAD3-202ENST00000439724 SLC52A1Q9NWF4 448 aa16.11■□□□□ 0.17
SMAD3-202ENST00000439724 RALBP1Q15311 655 aa16.1■□□□□ 0.17
SMAD3-202ENST00000439724 CDCA8Q53HL2 280 aa16.1■□□□□ 0.17
SMAD3-202ENST00000439724 ERVK-7P63135 1459 aa16.1■□□□□ 0.17
SMAD3-202ENST00000439724 ADGRB1O14514 1584 aa16.1■□□□□ 0.17
SMAD3-202ENST00000439724 ZFYVE9O95405 1425 aa16.1■□□□□ 0.17
SMAD3-202ENST00000439724 TMEM131LA2VDJ0 1609 aa16.1■□□□□ 0.17
SMAD3-202ENST00000439724 KDM5AP29375 1690 aaKnown RBP16.09■□□□□ 0.17
SMAD3-202ENST00000439724 CLTCQ00610 1675 aaKnown RBP16.09■□□□□ 0.17
SMAD3-202ENST00000439724 SBNO2Q9Y2G9 1366 aa16.09■□□□□ 0.17
SMAD3-202ENST00000439724 SLC24A1O60721 1099 aa16.09■□□□□ 0.17
SMAD3-202ENST00000439724 PER1O15534 1290 aaPredicted RBP16.09■□□□□ 0.17
SMAD3-202ENST00000439724 HNRNPUQ00839 825 aaKnown RBP eCLIP16.09■□□□□ 0.172e-6■■■□□ 17.7
SMAD3-202ENST00000439724 MYOM1P52179 1685 aa16.08■□□□□ 0.17
SMAD3-202ENST00000439724 MYO5BQ9ULV0 1848 aa16.08■□□□□ 0.16
SMAD3-202ENST00000439724 PARD3Q8TEW0 1356 aa16.08■□□□□ 0.16
SMAD3-202ENST00000439724 C14orf93Q9H972 538 aaKnown RBP16.08■□□□□ 0.16
SMAD3-202ENST00000439724 IDI1Q13907 227 aa16.07■□□□□ 0.16
SMAD3-202ENST00000439724 SPATA31D1Q6ZQQ2 1576 aa16.07■□□□□ 0.16
SMAD3-202ENST00000439724 MYBBP1AQ9BQG0 1328 aaKnown RBP16.07■□□□□ 0.16
SMAD3-202ENST00000439724 BRD4O60885 1362 aaPredicted RBP16.06■□□□□ 0.16
SMAD3-202ENST00000439724 VGFO15240 615 aaPredicted RBP16.05■□□□□ 0.16
SMAD3-202ENST00000439724 FAM9BQ8IZU0 186 aa16.04■□□□□ 0.16
SMAD3-202ENST00000439724 PANK3Q9H999 370 aa16.04■□□□□ 0.16
SMAD3-202ENST00000439724 QRICH2Q9H0J4 1663 aa16.03■□□□□ 0.16
SMAD3-202ENST00000439724 ARHGEF28Q8N1W1 1705 aaKnown RBP16.01■□□□□ 0.15
SMAD3-202ENST00000439724 ZBED9Q6R2W3 1325 aa16.01■□□□□ 0.15
SMAD3-202ENST00000439724 FBXO31Q5XUX0 539 aaPredicted RBP16■□□□□ 0.15
SMAD3-202ENST00000439724 CENPJQ9HC77 1338 aaPredicted RBP16■□□□□ 0.15
SMAD3-202ENST00000439724 NLRP13Q86W25 1043 aa15.99■□□□□ 0.15
SMAD3-202ENST00000439724 TMC1Q8TDI8 760 aa15.99■□□□□ 0.15
SMAD3-202ENST00000439724 PNISRQ8TF01 805 aaKnown RBP15.99■□□□□ 0.15
SMAD3-202ENST00000439724 LRPPRCP42704 1394 aaKnown RBP15.99■□□□□ 0.15
SMAD3-202ENST00000439724 CNGB1Q14028 1251 aaPredicted RBP15.99■□□□□ 0.15
SMAD3-202ENST00000439724 ASXL1Q8IXJ9 1541 aa15.98■□□□□ 0.15
SMAD3-202ENST00000439724 NPC1L1Q9UHC9 1359 aa15.98■□□□□ 0.15
SMAD3-202ENST00000439724 SUPT16HQ9Y5B9 1047 aaKnown RBP15.97■□□□□ 0.15
SMAD3-202ENST00000439724 A2ML1A8K2U0 1454 aa15.96■□□□□ 0.15
SMAD3-202ENST00000439724 TRAK1Q9UPV9 953 aa15.95■□□□□ 0.14
SMAD3-202ENST00000439724 KNSTRNQ9Y448 316 aa15.94■□□□□ 0.14
SMAD3-202ENST00000439724 CC2D1BQ5T0F9 858 aaKnown RBP15.94■□□□□ 0.14
SMAD3-202ENST00000439724 TMEM132EQ6IEE7 984 aa15.94■□□□□ 0.14
SMAD3-202ENST00000439724 INSRP06213 1382 aa15.93■□□□□ 0.14
SMAD3-202ENST00000439724 MLECQ14165 292 aa15.93■□□□□ 0.14
SMAD3-202ENST00000439724 AMER1Q5JTC6 1135 aaPredicted RBP15.93■□□□□ 0.14
SMAD3-202ENST00000439724 NUTM2DQ5VT03 806 aaPredicted RBP15.93■□□□□ 0.14
SMAD3-202ENST00000439724 ZMYM3Q14202 1370 aa15.92■□□□□ 0.14
SMAD3-202ENST00000439724 ALKQ9UM73 1620 aa15.92■□□□□ 0.14
SMAD3-202ENST00000439724 PUS7Q96PZ0 661 aaKnown RBP15.92■□□□□ 0.14
SMAD3-202ENST00000439724 TULP4Q9NRJ4 1543 aa15.9■□□□□ 0.14
SMAD3-202ENST00000439724 ESF1Q9H501 851 aaKnown RBP15.9■□□□□ 0.14
SMAD3-202ENST00000439724 STAG3Q9UJ98 1225 aa15.9■□□□□ 0.14
SMAD3-202ENST00000439724 RIMS2Q9UQ26 1411 aa15.9■□□□□ 0.14
SMAD3-202ENST00000439724 SETD1AO15047 1707 aaKnown RBP15.89■□□□□ 0.13
SMAD3-202ENST00000439724 NEFLP07196 543 aa15.89■□□□□ 0.13
SMAD3-202ENST00000439724 PTPRMP28827 1452 aa15.89■□□□□ 0.13
SMAD3-202ENST00000439724 USP32Q8NFA0 1604 aa15.88■□□□□ 0.13
SMAD3-202ENST00000439724 YTHDC2Q9H6S0 1430 aaKnown RBP15.88■□□□□ 0.13
SMAD3-202ENST00000439724 TNRQ92752 1358 aa15.87■□□□□ 0.13
SMAD3-202ENST00000439724 DLC1Q96QB1 1528 aa15.87■□□□□ 0.13
SMAD3-202ENST00000439724 EVC2Q86UK5 1308 aa15.87■□□□□ 0.13
SMAD3-202ENST00000439724 SMG6Q86US8 1419 aaKnown RBP15.86■□□□□ 0.13
SMAD3-202ENST00000439724 PPP2R1AP30153 589 aa15.85■□□□□ 0.13
SMAD3-202ENST00000439724 FKBP8Q14318 412 aa15.85■□□□□ 0.13
SMAD3-202ENST00000439724 BLMP54132 1417 aaPredicted RBP15.85■□□□□ 0.13
SMAD3-202ENST00000439724 NRXN3Q9Y4C0 1643 aa15.85■□□□□ 0.13
SMAD3-202ENST00000439724 UBR1Q8IWV7 1749 aa15.84■□□□□ 0.13
SMAD3-202ENST00000439724 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.84■□□□□ 0.13
SMAD3-202ENST00000439724 CARD14Q9BXL6 1004 aa15.84■□□□□ 0.13
SMAD3-202ENST00000439724 NINLQ9Y2I6 1382 aa15.82■□□□□ 0.12
SMAD3-202ENST00000439724 NSD3Q9BZ95 1437 aa15.81■□□□□ 0.12
SMAD3-202ENST00000439724 NLRP1Q9C000 1473 aa15.81■□□□□ 0.12
SMAD3-202ENST00000439724 STK26Q9P289 416 aa15.8■□□□□ 0.12
SMAD3-202ENST00000439724 KNDC1Q76NI1 1749 aa15.8■□□□□ 0.12
SMAD3-202ENST00000439724 FER1L4A9Z1Z3 1794 aa15.8■□□□□ 0.12
SMAD3-202ENST00000439724 ANKRD36BQ8N2N9 1353 aa15.8■□□□□ 0.12
SMAD3-202ENST00000439724 C3P01024 1663 aa15.8■□□□□ 0.12
SMAD3-202ENST00000439724 NUDCQ9Y266 331 aa15.79■□□□□ 0.12
SMAD3-202ENST00000439724 SLC12A5Q9H2X9 1139 aa15.78■□□□□ 0.12
SMAD3-202ENST00000439724 ATAD2Q6PL18 1390 aa15.78■□□□□ 0.12
SMAD3-202ENST00000439724 HDGFP51858 240 aaKnown RBP15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms