RNA–Protein interactions for RNA: ENST00000438518.5

HDAC6-208, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-208ENST00000438518 POLR1AO95602 1720 aaPredicted RBP26.63■■□□□ 1.85
HDAC6-208ENST00000438518 NEUROD1Q13562 356 aa26.62■■□□□ 1.85
HDAC6-208ENST00000438518 ZNF326Q5BKZ1 582 aaKnown RBP26.62■■□□□ 1.85
HDAC6-208ENST00000438518 ZFYVE9O95405 1425 aa26.62■■□□□ 1.85
HDAC6-208ENST00000438518 TONSLQ96HA7 1378 aa26.61■■□□□ 1.85
HDAC6-208ENST00000438518 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.61■■□□□ 1.85
HDAC6-208ENST00000438518 RIMS2Q9UQ26 1411 aa26.6■■□□□ 1.85
HDAC6-208ENST00000438518 MYOM2P54296 1465 aa26.6■■□□□ 1.85
HDAC6-208ENST00000438518 RGL3Q3MIN7 710 aa26.58■■□□□ 1.85
HDAC6-208ENST00000438518 SCAF11Q99590 1463 aaKnown RBP26.57■■□□□ 1.84
HDAC6-208ENST00000438518 EID1Q9Y6B2 187 aa26.57■■□□□ 1.84
HDAC6-208ENST00000438518 VGFO15240 615 aaPredicted RBP26.55■■□□□ 1.84
HDAC6-208ENST00000438518 ANKLE2Q86XL3 938 aa26.54■■□□□ 1.84
HDAC6-208ENST00000438518 MED14O60244 1454 aa26.52■■□□□ 1.84
HDAC6-208ENST00000438518 TXNDC2Q86VQ3 553 aa26.51■■□□□ 1.83
HDAC6-208ENST00000438518 NRXN1Q9ULB1 1477 aa26.5■■□□□ 1.83
HDAC6-208ENST00000438518 L3MBTL2Q969R5 705 aa26.5■■□□□ 1.83
HDAC6-208ENST00000438518 PLEKHG1Q9ULL1 1385 aa26.49■■□□□ 1.83
HDAC6-208ENST00000438518 PPP1R15AO75807 674 aaPredicted RBP26.49■■□□□ 1.83
HDAC6-208ENST00000438518 DCAF11Q8TEB1 546 aa26.49■■□□□ 1.83
HDAC6-208ENST00000438518 SETBP1Q9Y6X0 1596 aa26.49■■□□□ 1.83
HDAC6-208ENST00000438518 STRCQ7RTU9 1775 aa26.48■■□□□ 1.83
HDAC6-208ENST00000438518 LAMC1P11047 1609 aa26.48■■□□□ 1.83
HDAC6-208ENST00000438518 IQGAP1P46940 1657 aa26.47■■□□□ 1.83
HDAC6-208ENST00000438518 HSPA2P54652 639 aa26.47■■□□□ 1.83
HDAC6-208ENST00000438518 DIP2AQ14689 1571 aa26.46■■□□□ 1.83
HDAC6-208ENST00000438518 LTKP29376 864 aa26.46■■□□□ 1.83
HDAC6-208ENST00000438518 PIK3C2GO75747 1445 aa26.45■■□□□ 1.82
HDAC6-208ENST00000438518 KIAA1210Q9ULL0 1709 aa26.45■■□□□ 1.82
HDAC6-208ENST00000438518 NPHP4O75161 1426 aaPredicted RBP26.43■■□□□ 1.82
HDAC6-208ENST00000438518 NRXN3Q9Y4C0 1643 aa26.42■■□□□ 1.82
HDAC6-208ENST00000438518 PRAG1Q86YV5 1406 aa26.41■■□□□ 1.82
HDAC6-208ENST00000438518 ADGRF5Q8IZF2 1346 aa26.4■■□□□ 1.82
HDAC6-208ENST00000438518 KDM2AQ9Y2K7 1162 aa26.39■■□□□ 1.82
HDAC6-208ENST00000438518 NUTM2DQ5VT03 806 aaPredicted RBP26.38■■□□□ 1.81
HDAC6-208ENST00000438518 DMRT2Q9Y5R5 561 aa26.38■■□□□ 1.81
HDAC6-208ENST00000438518 NCKAP5LQ9HCH0 1330 aa26.38■■□□□ 1.81
HDAC6-208ENST00000438518 SETD1AO15047 1707 aaKnown RBP26.37■■□□□ 1.81
HDAC6-208ENST00000438518 ALKQ9UM73 1620 aa26.36■■□□□ 1.81
HDAC6-208ENST00000438518 TRPM1Q7Z4N2 1603 aa26.36■■□□□ 1.81
HDAC6-208ENST00000438518 ZEB1P37275 1124 aaPredicted RBP26.35■■□□□ 1.81
HDAC6-208ENST00000438518 ADAMTS13Q76LX8 1427 aa26.35■■□□□ 1.81
HDAC6-208ENST00000438518 BCANQ96GW7 911 aa26.33■■□□□ 1.81
HDAC6-208ENST00000438518 TBX22Q9Y458 520 aa26.32■■□□□ 1.8
HDAC6-208ENST00000438518 PIK3R4Q99570 1358 aa26.32■■□□□ 1.8
HDAC6-208ENST00000438518 C14orf93Q9H972 538 aaKnown RBP26.31■■□□□ 1.8
HDAC6-208ENST00000438518 RALGAPBQ86X10 1494 aa26.3■■□□□ 1.8
HDAC6-208ENST00000438518 CHD2O14647 1828 aaKnown RBP26.25■■□□□ 1.79
HDAC6-208ENST00000438518 ADGRB1O14514 1584 aa26.24■■□□□ 1.79
HDAC6-208ENST00000438518 NBPF8Q3BBV2 869 aa26.24■■□□□ 1.79
HDAC6-208ENST00000438518 CFAP70Q5T0N1 1121 aa26.24■■□□□ 1.79
HDAC6-208ENST00000438518 KNDC1Q76NI1 1749 aa26.23■■□□□ 1.79
HDAC6-208ENST00000438518 SLC26A8Q96RN1 970 aa26.23■■□□□ 1.79
HDAC6-208ENST00000438518 NWD1Q149M9 1564 aa26.23■■□□□ 1.79
HDAC6-208ENST00000438518 ASXL1Q8IXJ9 1541 aa26.23■■□□□ 1.79
HDAC6-208ENST00000438518 GPRASP1Q5JY77 1395 aa26.21■■□□□ 1.79
HDAC6-208ENST00000438518 ROCK2O75116 1388 aaKnown RBP26.2■■□□□ 1.79
HDAC6-208ENST00000438518 METP08581 1390 aa26.2■■□□□ 1.78
HDAC6-208ENST00000438518 XRN1Q8IZH2 1706 aaKnown RBP26.19■■□□□ 1.78
HDAC6-208ENST00000438518 TECPR2O15040 1411 aa26.16■■□□□ 1.78
HDAC6-208ENST00000438518 YTHDC2Q9H6S0 1430 aaKnown RBP26.16■■□□□ 1.78
HDAC6-208ENST00000438518 LRPPRCP42704 1394 aaKnown RBP26.16■■□□□ 1.78
HDAC6-208ENST00000438518 NKTRP30414 1462 aaKnown RBP26.16■■□□□ 1.78
HDAC6-208ENST00000438518 CPS1P31327 1500 aa26.15■■□□□ 1.78
HDAC6-208ENST00000438518 DLC1Q96QB1 1528 aa26.15■■□□□ 1.78
HDAC6-208ENST00000438518 SENP3Q9H4L4 574 aaPredicted RBP26.15■■□□□ 1.78
HDAC6-208ENST00000438518 ABCC11Q96J66 1382 aa26.14■■□□□ 1.78
HDAC6-208ENST00000438518 KCNA6P17658 529 aa26.13■■□□□ 1.77
HDAC6-208ENST00000438518 PTCH1Q13635 1447 aa26.13■■□□□ 1.77
HDAC6-208ENST00000438518 NBPF1Q3BBV0 1214 aa26.12■■□□□ 1.77
HDAC6-208ENST00000438518 PTPRUQ92729 1446 aa26.12■■□□□ 1.77
HDAC6-208ENST00000438518 TMEM132EQ6IEE7 984 aa26.11■■□□□ 1.77
HDAC6-208ENST00000438518 ARHGEF28Q8N1W1 1705 aaKnown RBP26.11■■□□□ 1.77
HDAC6-208ENST00000438518 CARD11Q9BXL7 1154 aa26.1■■□□□ 1.77
HDAC6-208ENST00000438518 STRCP1A6NGW2 1772 aa26.1■■□□□ 1.77
HDAC6-208ENST00000438518 EIF3AQ14152 1382 aaKnown RBP26.09■■□□□ 1.77
HDAC6-208ENST00000438518 SIRT1Q96EB6 747 aa26.09■■□□□ 1.77
HDAC6-208ENST00000438518 AMOTL2Q9Y2J4 779 aa26.09■■□□□ 1.77
HDAC6-208ENST00000438518 FAM135BQ49AJ0 1406 aa26.08■■□□□ 1.77
HDAC6-208ENST00000438518 ZNF335Q9H4Z2 1342 aaPredicted RBP26.03■■□□□ 1.76
HDAC6-208ENST00000438518 NCOA3Q9Y6Q9 1424 aa26.03■■□□□ 1.76
HDAC6-208ENST00000438518 LTBP4Q8N2S1 1624 aa26.01■■□□□ 1.75
HDAC6-208ENST00000438518 STK26Q9P289 416 aa26.01■■□□□ 1.75
HDAC6-208ENST00000438518 TRAK1Q9UPV9 953 aa26.01■■□□□ 1.75
HDAC6-208ENST00000438518 ROBO2Q9HCK4 1378 aa26■■□□□ 1.75
HDAC6-208ENST00000438518 USP47Q96K76 1375 aa25.99■■□□□ 1.75
HDAC6-208ENST00000438518 QRICH2Q9H0J4 1663 aa25.98■■□□□ 1.75
HDAC6-208ENST00000438518 SLC24A1O60721 1099 aa25.96■■□□□ 1.75
HDAC6-208ENST00000438518 LRRC7Q96NW7 1537 aa25.96■■□□□ 1.75
HDAC6-208ENST00000438518 SBNO2Q9Y2G9 1366 aa25.95■■□□□ 1.75
HDAC6-208ENST00000438518 EIF4G2P78344 907 aaKnown RBP eCLIP25.95■■□□□ 1.74
HDAC6-208ENST00000438518 ADGRB2O60241 1585 aa25.95■■□□□ 1.74
HDAC6-208ENST00000438518 CENPJQ9HC77 1338 aaPredicted RBP25.94■■□□□ 1.74
HDAC6-208ENST00000438518 PROSER2Q86WR7 435 aaPredicted RBP25.94■■□□□ 1.74
HDAC6-208ENST00000438518 PRAM1Q96QH2 718 aa25.94■■□□□ 1.74
HDAC6-208ENST00000438518 POGKQ9P215 609 aa25.94■■□□□ 1.74
HDAC6-208ENST00000438518 XIRP1Q702N8 1843 aaKnown RBP25.93■■□□□ 1.74
HDAC6-208ENST00000438518 NALCNQ8IZF0 1738 aa25.92■■□□□ 1.74
HDAC6-208ENST00000438518 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.91■■□□□ 1.74
HDAC6-208ENST00000438518 IQSEC2Q5JU85 1478 aa25.91■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms