RNA–Protein interactions for RNA: ENST00000437340.5

CPNE1-216, Transcript of copine 1, humanhuman

TSL 1 (best)

Gene CPNE1, Length 1,755 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-216ENST00000437340 NOS1P29475 1434 aa35.3■■■■□ 3.24
CPNE1-216ENST00000437340 ADGRB3O60242 1522 aa35.28■■■■□ 3.24
CPNE1-216ENST00000437340 IQGAP1P46940 1657 aa35.27■■■■□ 3.24
CPNE1-216ENST00000437340 PIK3C2BO00750 1634 aa35.26■■■■□ 3.23
CPNE1-216ENST00000437340 MROH2AA6NES4 1674 aa35.26■■■■□ 3.23
CPNE1-216ENST00000437340 IFT172Q9UG01 1749 aa35.25■■■■□ 3.23
CPNE1-216ENST00000437340 SCAF11Q99590 1463 aaKnown RBP35.24■■■■□ 3.23
CPNE1-216ENST00000437340 KTN1Q86UP2 1357 aaKnown RBP35.22■■■■□ 3.23
CPNE1-216ENST00000437340 TMF1P82094 1093 aa35.22■■■■□ 3.23
CPNE1-216ENST00000437340 NRXN1Q9ULB1 1477 aa35.22■■■■□ 3.23
CPNE1-216ENST00000437340 MRS2Q9HD23 443 aa35.21■■■■□ 3.23
CPNE1-216ENST00000437340 CCDC184Q52MB2 194 aa35.2■■■■□ 3.23
CPNE1-216ENST00000437340 ERVK-7P63135 1459 aa35.19■■■■□ 3.22
CPNE1-216ENST00000437340 DISP3Q9P2K9 1392 aa35.18■■■■□ 3.22
CPNE1-216ENST00000437340 FER1L4A9Z1Z3 1794 aa35.17■■■■□ 3.22
CPNE1-216ENST00000437340 ESF1Q9H501 851 aaKnown RBP35.15■■■■□ 3.22
CPNE1-216ENST00000437340 EIF3AQ14152 1382 aaKnown RBP35.15■■■■□ 3.22
CPNE1-216ENST00000437340 RPGRIP1LQ68CZ1 1315 aa35.15■■■■□ 3.22
CPNE1-216ENST00000437340 FBXO31Q5XUX0 539 aaPredicted RBP35.15■■■■□ 3.22
CPNE1-216ENST00000437340 SPATA31D1Q6ZQQ2 1576 aa35.15■■■■□ 3.22
CPNE1-216ENST00000437340 ADGRF5Q8IZF2 1346 aa35.13■■■■□ 3.21
CPNE1-216ENST00000437340 HNRNPUQ00839 825 aaKnown RBP eCLIP35.12■■■■□ 3.21
CPNE1-216ENST00000437340 ZMYM3Q14202 1370 aa35.12■■■■□ 3.21
CPNE1-216ENST00000437340 RALBP1Q15311 655 aa35.1■■■■□ 3.21
CPNE1-216ENST00000437340 MYO5BQ9ULV0 1848 aa35.08■■■■□ 3.21
CPNE1-216ENST00000437340 SLC24A1O60721 1099 aa35.08■■■■□ 3.21
CPNE1-216ENST00000437340 CDCA8Q53HL2 280 aa35.07■■■■□ 3.2
CPNE1-216ENST00000437340 PPLO60437 1756 aa35.07■■■■□ 3.2
CPNE1-216ENST00000437340 CHGAP10645 457 aaKnown RBP35.05■■■■□ 3.2
CPNE1-216ENST00000437340 CFAP70Q5T0N1 1121 aa35.05■■■■□ 3.2
CPNE1-216ENST00000437340 SETBP1Q9Y6X0 1596 aa35.04■■■■□ 3.2
CPNE1-216ENST00000437340 PER1O15534 1290 aaPredicted RBP35.04■■■■□ 3.2
CPNE1-216ENST00000437340 C3P01024 1663 aa35.04■■■■□ 3.2
CPNE1-216ENST00000437340 FAM9BQ8IZU0 186 aa35.03■■■■□ 3.2
CPNE1-216ENST00000437340 IDI1Q13907 227 aa35.02■■■■□ 3.2
CPNE1-216ENST00000437340 SLC52A1Q9NWF4 448 aa35.02■■■■□ 3.2
CPNE1-216ENST00000437340 PIK3C2GO75747 1445 aa35.02■■■■□ 3.2
CPNE1-216ENST00000437340 TMEM131LA2VDJ0 1609 aa35.02■■■■□ 3.2
CPNE1-216ENST00000437340 MYBBP1AQ9BQG0 1328 aaKnown RBP35■■■■□ 3.19
CPNE1-216ENST00000437340 BRD4O60885 1362 aaPredicted RBP34.97■■■■□ 3.19
CPNE1-216ENST00000437340 PARD3Q8TEW0 1356 aa34.97■■■■□ 3.19
CPNE1-216ENST00000437340 C14orf93Q9H972 538 aaKnown RBP34.95■■■■□ 3.19
CPNE1-216ENST00000437340 ADAMTSL3P82987 1691 aa34.95■■■■□ 3.19
CPNE1-216ENST00000437340 RIMS1Q86UR5 1692 aaKnown RBP34.95■■■■□ 3.19
CPNE1-216ENST00000437340 PANK3Q9H999 370 aa34.94■■■■□ 3.18
CPNE1-216ENST00000437340 SUPT16HQ9Y5B9 1047 aaKnown RBP34.93■■■■□ 3.18
CPNE1-216ENST00000437340 MYO3AQ8NEV4 1616 aa34.93■■■■□ 3.18
CPNE1-216ENST00000437340 ZBED9Q6R2W3 1325 aa34.92■■■■□ 3.18
CPNE1-216ENST00000437340 CNGB1Q14028 1251 aaPredicted RBP34.92■■■■□ 3.18
CPNE1-216ENST00000437340 NEXMIFQ5QGS0 1516 aa34.92■■■■□ 3.18
CPNE1-216ENST00000437340 SBNO2Q9Y2G9 1366 aa34.92■■■■□ 3.18
CPNE1-216ENST00000437340 TMC1Q8TDI8 760 aa34.91■■■■□ 3.18
CPNE1-216ENST00000437340 VGFO15240 615 aaPredicted RBP34.9■■■■□ 3.18
CPNE1-216ENST00000437340 TNRQ92752 1358 aa34.89■■■■□ 3.18
CPNE1-216ENST00000437340 ZFYVE9O95405 1425 aa34.89■■■■□ 3.18
CPNE1-216ENST00000437340 CEBPAP49715 358 aaPredicted RBP34.88■■■■□ 3.17
CPNE1-216ENST00000437340 PNISRQ8TF01 805 aaKnown RBP34.88■■■■□ 3.17
CPNE1-216ENST00000437340 ADGRB1O14514 1584 aa34.87■■■■□ 3.17
CPNE1-216ENST00000437340 NLRP13Q86W25 1043 aa34.85■■■■□ 3.17
CPNE1-216ENST00000437340 KDM5AP29375 1690 aaKnown RBP34.83■■■■□ 3.17
CPNE1-216ENST00000437340 A2ML1A8K2U0 1454 aa34.82■■■■□ 3.16
CPNE1-216ENST00000437340 LRPPRCP42704 1394 aaKnown RBP34.8■■■■□ 3.16
CPNE1-216ENST00000437340 CENPJQ9HC77 1338 aaPredicted RBP34.8■■■■□ 3.16
CPNE1-216ENST00000437340 UBR1Q8IWV7 1749 aa34.79■■■■□ 3.16
CPNE1-216ENST00000437340 PLPPR3Q6T4P5 718 aa34.77■■■■□ 3.16
CPNE1-216ENST00000437340 STAG3Q9UJ98 1225 aa34.77■■■■□ 3.16
CPNE1-216ENST00000437340 MYOM1P52179 1685 aa34.77■■■■□ 3.16
CPNE1-216ENST00000437340 NEFLP07196 543 aa34.77■■■■□ 3.16
CPNE1-216ENST00000437340 KNSTRNQ9Y448 316 aa34.75■■■■□ 3.15
CPNE1-216ENST00000437340 NLRP1Q9C000 1473 aa34.74■■■■□ 3.15
CPNE1-216ENST00000437340 NUTM2DQ5VT03 806 aaPredicted RBP34.74■■■■□ 3.15
CPNE1-216ENST00000437340 CC2D1BQ5T0F9 858 aaKnown RBP34.72■■■■□ 3.15
CPNE1-216ENST00000437340 NPC1L1Q9UHC9 1359 aa34.72■■■■□ 3.15
CPNE1-216ENST00000437340 TRAK1Q9UPV9 953 aa34.7■■■■□ 3.15
CPNE1-216ENST00000437340 ASXL1Q8IXJ9 1541 aa34.69■■■■□ 3.14
CPNE1-216ENST00000437340 FKBP8Q14318 412 aa34.68■■■■□ 3.14
CPNE1-216ENST00000437340 AMER1Q5JTC6 1135 aaPredicted RBP34.68■■■■□ 3.14
CPNE1-216ENST00000437340 TMEM132EQ6IEE7 984 aa34.67■■■■□ 3.14
CPNE1-216ENST00000437340 RIMS2Q9UQ26 1411 aa34.66■■■■□ 3.14
CPNE1-216ENST00000437340 QRICH2Q9H0J4 1663 aa34.66■■■■□ 3.14
CPNE1-216ENST00000437340 INSRP06213 1382 aa34.66■■■■□ 3.14
CPNE1-216ENST00000437340 PUS7Q96PZ0 661 aaKnown RBP34.62■■■■□ 3.13
CPNE1-216ENST00000437340 ARHGEF28Q8N1W1 1705 aaKnown RBP34.6■■■■□ 3.13
CPNE1-216ENST00000437340 PTPRMP28827 1452 aa34.56■■■■□ 3.12
CPNE1-216ENST00000437340 CEP170BQ9Y4F5 1589 aaPredicted RBP34.56■■■■□ 3.12
CPNE1-216ENST00000437340 SMG6Q86US8 1419 aaKnown RBP34.55■■■■□ 3.12
CPNE1-216ENST00000437340 TMEM2Q9UHN6 1383 aa34.55■■■■□ 3.12
CPNE1-216ENST00000437340 ZNF142P52746 1687 aaPredicted RBP34.54■■■■□ 3.12
CPNE1-216ENST00000437340 SENP3Q9H4L4 574 aaPredicted RBP34.53■■■■□ 3.12
CPNE1-216ENST00000437340 SETD1BQ9UPS6 1966 aaKnown RBP34.52■■■■□ 3.12
CPNE1-216ENST00000437340 PPP2R1AP30153 589 aa34.51■■■■□ 3.12
CPNE1-216ENST00000437340 NRXN3Q9Y4C0 1643 aa34.51■■■■□ 3.12
CPNE1-216ENST00000437340 SETD1AO15047 1707 aaKnown RBP34.51■■■■□ 3.12
CPNE1-216ENST00000437340 ALKQ9UM73 1620 aa34.51■■■■□ 3.11
CPNE1-216ENST00000437340 PELP1Q8IZL8 1130 aaKnown RBP34.5■■■■□ 3.11
CPNE1-216ENST00000437340 EVC2Q86UK5 1308 aa34.5■■■■□ 3.11
CPNE1-216ENST00000437340 ABCF1Q8NE71 845 aaKnown RBP eCLIP34.49■■■■□ 3.11
CPNE1-216ENST00000437340 SLIT1O75093 1534 aa34.48■■■■□ 3.11
CPNE1-216ENST00000437340 ARHGAP23Q9P227 1491 aa34.47■■■■□ 3.11
CPNE1-216ENST00000437340 CARD14Q9BXL6 1004 aa34.46■■■■□ 3.11
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms