RNA–Protein interactions for RNA: ENST00000425836.6

VEGFA-209, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,575 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-209ENST00000425836 SPATA31E1Q6ZUB1 1445 aa35.78■■■■□ 3.32
VEGFA-209ENST00000425836 ABCF1Q8NE71 845 aaKnown RBP eCLIP35.77■■■■□ 3.32
VEGFA-209ENST00000425836 NEURL4Q96JN8 1562 aa35.77■■■■□ 3.32
VEGFA-209ENST00000425836 MED14O60244 1454 aa35.76■■■■□ 3.32
VEGFA-209ENST00000425836 RGL3Q3MIN7 710 aa35.76■■■■□ 3.31
VEGFA-209ENST00000425836 NUTM2DQ5VT03 806 aaPredicted RBP35.76■■■■□ 3.31
VEGFA-209ENST00000425836 KIF1BO60333 1816 aa35.75■■■■□ 3.31
VEGFA-209ENST00000425836 NPHP4O75161 1426 aaPredicted RBP35.74■■■■□ 3.31
VEGFA-209ENST00000425836 PPP1R15AO75807 674 aaPredicted RBP35.72■■■■□ 3.31
VEGFA-209ENST00000425836 RPGRIP1LQ68CZ1 1315 aa35.72■■■■□ 3.31
VEGFA-209ENST00000425836 POLR1AO95602 1720 aaPredicted RBP35.71■■■■□ 3.31
VEGFA-209ENST00000425836 NEXMIFQ5QGS0 1516 aa35.67■■■■□ 3.3
VEGFA-209ENST00000425836 SIN3AQ96ST3 1273 aa35.66■■■■□ 3.3
VEGFA-209ENST00000425836 PLEKHG1Q9ULL1 1385 aa35.66■■■■□ 3.3
VEGFA-209ENST00000425836 SENP3Q9H4L4 574 aaPredicted RBP35.64■■■■□ 3.3
VEGFA-209ENST00000425836 VGFO15240 615 aaPredicted RBP35.62■■■■□ 3.29
VEGFA-209ENST00000425836 BCANQ96GW7 911 aa35.62■■■■□ 3.29
VEGFA-209ENST00000425836 IQGAP1P46940 1657 aa35.6■■■■□ 3.29
VEGFA-209ENST00000425836 SLC26A8Q96RN1 970 aa35.59■■■■□ 3.29
VEGFA-209ENST00000425836 NEUROD1Q13562 356 aa35.57■■■■□ 3.28
VEGFA-209ENST00000425836 ADGRF5Q8IZF2 1346 aa35.54■■■■□ 3.28
VEGFA-209ENST00000425836 ADAMTS13Q76LX8 1427 aa35.51■■■■□ 3.28
VEGFA-209ENST00000425836 PPLO60437 1756 aa35.51■■■■□ 3.28
VEGFA-209ENST00000425836 TBX22Q9Y458 520 aa35.51■■■■□ 3.27
VEGFA-209ENST00000425836 ZNF335Q9H4Z2 1342 aaPredicted RBP35.5■■■■□ 3.27
VEGFA-209ENST00000425836 DCAF11Q8TEB1 546 aa35.5■■■■□ 3.27
VEGFA-209ENST00000425836 KDM2AQ9Y2K7 1162 aa35.47■■■■□ 3.27
VEGFA-209ENST00000425836 SETBP1Q9Y6X0 1596 aa35.46■■■■□ 3.27
VEGFA-209ENST00000425836 IFT172Q9UG01 1749 aa35.45■■■■□ 3.27
VEGFA-209ENST00000425836 CCER1Q8TC90 406 aaPredicted RBP35.45■■■■□ 3.27
VEGFA-209ENST00000425836 MYOM2P54296 1465 aa35.44■■■■□ 3.26
VEGFA-209ENST00000425836 CLSPNQ9HAW4 1339 aa35.44■■■■□ 3.26
VEGFA-209ENST00000425836 STAC3Q96MF2 364 aa35.43■■■■□ 3.26
VEGFA-209ENST00000425836 L3MBTL2Q969R5 705 aa35.42■■■■□ 3.26
VEGFA-209ENST00000425836 NRXN3Q9Y4C0 1643 aa35.42■■■■□ 3.26
VEGFA-209ENST00000425836 NRXN1Q9ULB1 1477 aa35.4■■■■□ 3.26
VEGFA-209ENST00000425836 PIK3C2GO75747 1445 aa35.39■■■■□ 3.26
VEGFA-209ENST00000425836 DIP2AQ14689 1571 aa35.38■■■■□ 3.25
VEGFA-209ENST00000425836 KCNA6P17658 529 aa35.36■■■■□ 3.25
VEGFA-209ENST00000425836 METP08581 1390 aa35.36■■■■□ 3.25
VEGFA-209ENST00000425836 LTBP4Q8N2S1 1624 aa35.35■■■■□ 3.25
VEGFA-209ENST00000425836 PIK3R4Q99570 1358 aa35.34■■■■□ 3.25
VEGFA-209ENST00000425836 ALKQ9UM73 1620 aa35.33■■■■□ 3.25
VEGFA-209ENST00000425836 C14orf93Q9H972 538 aaKnown RBP35.33■■■■□ 3.25
VEGFA-209ENST00000425836 TONSLQ96HA7 1378 aa35.3■■■■□ 3.24
VEGFA-209ENST00000425836 CFAP70Q5T0N1 1121 aa35.3■■■■□ 3.24
VEGFA-209ENST00000425836 PTPRUQ92729 1446 aa35.29■■■■□ 3.24
VEGFA-209ENST00000425836 AMOTL2Q9Y2J4 779 aa35.26■■■■□ 3.24
VEGFA-209ENST00000425836 CPS1P31327 1500 aa35.25■■■■□ 3.23
VEGFA-209ENST00000425836 STRCP1A6NGW2 1772 aa35.24■■■■□ 3.23
VEGFA-209ENST00000425836 SETD1AO15047 1707 aaKnown RBP35.23■■■■□ 3.23
VEGFA-209ENST00000425836 TMEM132EQ6IEE7 984 aa35.23■■■■□ 3.23
VEGFA-209ENST00000425836 NWD1Q149M9 1564 aa35.22■■■■□ 3.23
VEGFA-209ENST00000425836 PRAG1Q86YV5 1406 aa35.22■■■■□ 3.23
VEGFA-209ENST00000425836 CERKQ8TCT0 537 aa35.22■■■■□ 3.23
VEGFA-209ENST00000425836 CHD2O14647 1828 aaKnown RBP35.19■■■■□ 3.22
VEGFA-209ENST00000425836 PROSER2Q86WR7 435 aaPredicted RBP35.18■■■■□ 3.22
VEGFA-209ENST00000425836 LRRC7Q96NW7 1537 aa35.17■■■■□ 3.22
VEGFA-209ENST00000425836 NKTRP30414 1462 aaKnown RBP35.17■■■■□ 3.22
VEGFA-209ENST00000425836 ASXL1Q8IXJ9 1541 aa35.17■■■■□ 3.22
VEGFA-209ENST00000425836 TIMELESSQ9UNS1 1208 aa35.15■■■■□ 3.22
VEGFA-209ENST00000425836 RBM33Q96EV2 1170 aaKnown RBP35.13■■■■□ 3.21
VEGFA-209ENST00000425836 LAMC1P11047 1609 aa35.13■■■■□ 3.21
VEGFA-209ENST00000425836 NBPF8Q3BBV2 869 aa35.13■■■■□ 3.21
VEGFA-209ENST00000425836 STK26Q9P289 416 aa35.13■■■■□ 3.21
VEGFA-209ENST00000425836 LRPPRCP42704 1394 aaKnown RBP35.12■■■■□ 3.21
VEGFA-209ENST00000425836 TMEM94Q12767 1356 aa35.12■■■■□ 3.21
VEGFA-209ENST00000425836 XRN1Q8IZH2 1706 aaKnown RBP35.11■■■■□ 3.21
VEGFA-209ENST00000425836 YTHDC2Q9H6S0 1430 aaKnown RBP35.1■■■■□ 3.21
VEGFA-209ENST00000425836 ADGRB1O14514 1584 aa35.09■■■■□ 3.21
VEGFA-209ENST00000425836 ABCC11Q96J66 1382 aa35.09■■■■□ 3.21
VEGFA-209ENST00000425836 NBPF1Q3BBV0 1214 aa35.08■■■■□ 3.21
VEGFA-209ENST00000425836 ROBO2Q9HCK4 1378 aa35.07■■■■□ 3.2
VEGFA-209ENST00000425836 TECPR2O15040 1411 aa35.05■■■■□ 3.2
VEGFA-209ENST00000425836 PTCH1Q13635 1447 aa35.05■■■■□ 3.2
VEGFA-209ENST00000425836 IQSEC2Q5JU85 1478 aa35.04■■■■□ 3.2
VEGFA-209ENST00000425836 KIAA1210Q9ULL0 1709 aa35.01■■■■□ 3.19
VEGFA-209ENST00000425836 NCOA3Q9Y6Q9 1424 aa35.01■■■■□ 3.19
VEGFA-209ENST00000425836 SIRT1Q96EB6 747 aa35■■■■□ 3.19
VEGFA-209ENST00000425836 TRAK1Q9UPV9 953 aa34.99■■■■□ 3.19
VEGFA-209ENST00000425836 WAPLQ7Z5K2 1190 aa34.98■■■■□ 3.19
VEGFA-209ENST00000425836 C14orf37Q86TY3 774 aa34.96■■■■□ 3.19
VEGFA-209ENST00000425836 ROCK2O75116 1388 aaKnown RBP34.94■■■■□ 3.18
VEGFA-209ENST00000425836 TRPM1Q7Z4N2 1603 aa34.94■■■■□ 3.18
VEGFA-209ENST00000425836 PLEKHH1Q9ULM0 1364 aa34.94■■■■□ 3.18
VEGFA-209ENST00000425836 XIRP1Q702N8 1843 aaKnown RBP34.93■■■■□ 3.18
VEGFA-209ENST00000425836 FAM135BQ49AJ0 1406 aa34.93■■■■□ 3.18
VEGFA-209ENST00000425836 KNDC1Q76NI1 1749 aa34.92■■■■□ 3.18
VEGFA-209ENST00000425836 PRAM1Q96QH2 718 aa34.91■■■■□ 3.18
VEGFA-209ENST00000425836 C19orf44Q9H6X5 657 aa34.91■■■■□ 3.18
VEGFA-209ENST00000425836 MSH6P52701 1360 aa34.91■■■■□ 3.18
VEGFA-209ENST00000425836 DLC1Q96QB1 1528 aa34.91■■■■□ 3.18
VEGFA-209ENST00000425836 GPRASP1Q5JY77 1395 aa34.89■■■■□ 3.18
VEGFA-209ENST00000425836 RALGAPBQ86X10 1494 aa34.89■■■■□ 3.18
VEGFA-209ENST00000425836 UBAP1LF5GYI3 381 aa34.87■■■■□ 3.17
VEGFA-209ENST00000425836 POGKQ9P215 609 aa34.87■■■■□ 3.17
VEGFA-209ENST00000425836 ADGRL3Q9HAR2 1447 aa34.86■■■■□ 3.17
VEGFA-209ENST00000425836 TOM1O60784 492 aa34.85■■■■□ 3.17
VEGFA-209ENST00000425836 SAFB2Q14151 953 aaKnown RBP eCLIP34.84■■■■□ 3.17
VEGFA-209ENST00000425836 CARD11Q9BXL7 1154 aa34.84■■■■□ 3.17
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms