RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 FKBP8Q14318 412 aa27.42■■□□□ 1.98
USP39-204ENST00000409766 NRXN1Q9ULB1 1477 aa27.42■■□□□ 1.98
USP39-204ENST00000409766 ADGRF5Q8IZF2 1346 aa27.41■■□□□ 1.98
USP39-204ENST00000409766 MYBBP1AQ9BQG0 1328 aaKnown RBP27.41■■□□□ 1.98
USP39-204ENST00000409766 YEATS2Q9ULM3 1422 aa27.4■■□□□ 1.98
USP39-204ENST00000409766 TSPOAP1O95153 1857 aa27.4■■□□□ 1.98
USP39-204ENST00000409766 PARD3Q8TEW0 1356 aa27.38■■□□□ 1.97
USP39-204ENST00000409766 NEFLP07196 543 aa27.38■■□□□ 1.97
USP39-204ENST00000409766 PNISRQ8TF01 805 aaKnown RBP27.38■■□□□ 1.97
USP39-204ENST00000409766 BRD4O60885 1362 aaPredicted RBP27.38■■□□□ 1.97
USP39-204ENST00000409766 SIGLEC1Q9BZZ2 1709 aa27.37■■□□□ 1.97
USP39-204ENST00000409766 TMC1Q8TDI8 760 aa27.37■■□□□ 1.97
USP39-204ENST00000409766 KIF13AQ9H1H9 1805 aa27.37■■□□□ 1.97
USP39-204ENST00000409766 NOS1P29475 1434 aa27.37■■□□□ 1.97
USP39-204ENST00000409766 CFAP70Q5T0N1 1121 aa27.36■■□□□ 1.97
USP39-204ENST00000409766 ZMYM4Q5VZL5 1548 aa27.36■■□□□ 1.97
USP39-204ENST00000409766 ZC3H13Q5T200 1668 aaKnown RBP27.36■■□□□ 1.97
USP39-204ENST00000409766 EIF3AQ14152 1382 aaKnown RBP27.36■■□□□ 1.97
USP39-204ENST00000409766 PPLO60437 1756 aa27.35■■□□□ 1.97
USP39-204ENST00000409766 PANK3Q9H999 370 aa27.35■■□□□ 1.97
USP39-204ENST00000409766 ARHGAP31Q2M1Z3 1444 aa27.33■■□□□ 1.97
USP39-204ENST00000409766 PIK3C2BO00750 1634 aa27.33■■□□□ 1.97
USP39-204ENST00000409766 CHGAP10645 457 aaKnown RBP27.31■■□□□ 1.96
USP39-204ENST00000409766 CDCA8Q53HL2 280 aa27.31■■□□□ 1.96
USP39-204ENST00000409766 SYNMO15061 1565 aa27.3■■□□□ 1.96
USP39-204ENST00000409766 LRPPRCP42704 1394 aaKnown RBP27.3■■□□□ 1.96
USP39-204ENST00000409766 SETBP1Q9Y6X0 1596 aa27.28■■□□□ 1.96
USP39-204ENST00000409766 NLRP13Q86W25 1043 aa27.28■■□□□ 1.96
USP39-204ENST00000409766 RPGRIP1LQ68CZ1 1315 aa27.28■■□□□ 1.96
USP39-204ENST00000409766 PIK3C2GO75747 1445 aa27.27■■□□□ 1.96
USP39-204ENST00000409766 PELP1Q8IZL8 1130 aaKnown RBP27.26■■□□□ 1.95
USP39-204ENST00000409766 MYO3AQ8NEV4 1616 aa27.25■■□□□ 1.95
USP39-204ENST00000409766 BCANQ96GW7 911 aa27.24■■□□□ 1.95
USP39-204ENST00000409766 MYOM1P52179 1685 aa27.24■■□□□ 1.95
USP39-204ENST00000409766 SLC24A1O60721 1099 aa27.24■■□□□ 1.95
USP39-204ENST00000409766 KDM5AP29375 1690 aaKnown RBP27.23■■□□□ 1.95
USP39-204ENST00000409766 CC2D1BQ5T0F9 858 aaKnown RBP27.23■■□□□ 1.95
USP39-204ENST00000409766 C14orf93Q9H972 538 aaKnown RBP27.21■■□□□ 1.95
USP39-204ENST00000409766 ERVK-7P63135 1459 aa27.2■■□□□ 1.94
USP39-204ENST00000409766 REREQ9P2R6 1566 aa27.19■■□□□ 1.94
USP39-204ENST00000409766 ADGRB1O14514 1584 aa27.19■■□□□ 1.94
USP39-204ENST00000409766 SBNO2Q9Y2G9 1366 aa27.18■■□□□ 1.94
USP39-204ENST00000409766 PREX1Q8TCU6 1659 aa27.18■■□□□ 1.94
USP39-204ENST00000409766 NEXMIFQ5QGS0 1516 aa27.18■■□□□ 1.94
USP39-204ENST00000409766 IDI1Q13907 227 aa27.16■■□□□ 1.94
USP39-204ENST00000409766 SLC52A1Q9NWF4 448 aa27.16■■□□□ 1.94
USP39-204ENST00000409766 KNSTRNQ9Y448 316 aa27.16■■□□□ 1.94
USP39-204ENST00000409766 SMG6Q86US8 1419 aaKnown RBP27.15■■□□□ 1.94
USP39-204ENST00000409766 AGLP35573 1532 aa27.14■■□□□ 1.93
USP39-204ENST00000409766 AMER1Q5JTC6 1135 aaPredicted RBP27.13■■□□□ 1.93
USP39-204ENST00000409766 VGFO15240 615 aaPredicted RBP27.12■■□□□ 1.93
USP39-204ENST00000409766 ASXL1Q8IXJ9 1541 aa27.12■■□□□ 1.93
USP39-204ENST00000409766 CENPJQ9HC77 1338 aaPredicted RBP27.11■■□□□ 1.93
USP39-204ENST00000409766 MYO5BQ9ULV0 1848 aa27.1■■□□□ 1.93
USP39-204ENST00000409766 TMEM131LA2VDJ0 1609 aa27.09■■□□□ 1.93
USP39-204ENST00000409766 NPC1L1Q9UHC9 1359 aa27.09■■□□□ 1.93
USP39-204ENST00000409766 ZFYVE9O95405 1425 aa27.09■■□□□ 1.93
USP39-204ENST00000409766 QRICH2Q9H0J4 1663 aa27.08■■□□□ 1.93
USP39-204ENST00000409766 TRAK1Q9UPV9 953 aa27.08■■□□□ 1.93
USP39-204ENST00000409766 TMEM132EQ6IEE7 984 aa27.07■■□□□ 1.92
USP39-204ENST00000409766 NUDCQ9Y266 331 aa27.07■■□□□ 1.92
USP39-204ENST00000409766 PPP6R1Q9UPN7 881 aa27.07■■□□□ 1.92
USP39-204ENST00000409766 INSRP06213 1382 aa27.07■■□□□ 1.92
USP39-204ENST00000409766 IRX6P78412 446 aaPredicted RBP27.06■■□□□ 1.92
USP39-204ENST00000409766 ERICH6BQ5W0A0 696 aa27.06■■□□□ 1.92
USP39-204ENST00000409766 NUTM2DQ5VT03 806 aaPredicted RBP27.05■■□□□ 1.92
USP39-204ENST00000409766 SENP3-EIF4A1A0A087X0R7 540 aa27.03■■□□□ 1.92
USP39-204ENST00000409766 FBXO31Q5XUX0 539 aaPredicted RBP27.02■■□□□ 1.92
USP39-204ENST00000409766 PPP2R1AP30153 589 aa27.02■■□□□ 1.92
USP39-204ENST00000409766 ARHGEF40Q8TER5 1519 aa27.01■■□□□ 1.91
USP39-204ENST00000409766 CLTCQ00610 1675 aaKnown RBP27.01■■□□□ 1.91
USP39-204ENST00000409766 ARHGEF28Q8N1W1 1705 aaKnown RBP27.01■■□□□ 1.91
USP39-204ENST00000409766 BLMP54132 1417 aaPredicted RBP27■■□□□ 1.91
USP39-204ENST00000409766 CARD14Q9BXL6 1004 aa26.97■■□□□ 1.91
USP39-204ENST00000409766 RNF123Q5XPI4 1314 aa26.94■■□□□ 1.9
USP39-204ENST00000409766 SPATA31D1Q6ZQQ2 1576 aa26.93■■□□□ 1.9
USP39-204ENST00000409766 TSHZ2Q9NRE2 1034 aa26.9■■□□□ 1.9
USP39-204ENST00000409766 PDE3BQ13370 1112 aa26.9■■□□□ 1.9
USP39-204ENST00000409766 PUS7Q96PZ0 661 aaKnown RBP26.9■■□□□ 1.9
USP39-204ENST00000409766 PPP4R2Q9NY27 417 aa26.89■■□□□ 1.9
USP39-204ENST00000409766 ADAMTS8Q9UP79 889 aa26.89■■□□□ 1.9
USP39-204ENST00000409766 TULP4Q9NRJ4 1543 aa26.89■■□□□ 1.9
USP39-204ENST00000409766 SLC12A5Q9H2X9 1139 aa26.87■■□□□ 1.89
USP39-204ENST00000409766 SALL2Q9Y467 1007 aaPredicted RBP26.87■■□□□ 1.89
USP39-204ENST00000409766 EVC2Q86UK5 1308 aa26.86■■□□□ 1.89
USP39-204ENST00000409766 MLECQ14165 292 aa26.86■■□□□ 1.89
USP39-204ENST00000409766 A2ML1A8K2U0 1454 aa26.84■■□□□ 1.89
USP39-204ENST00000409766 STAG3Q9UJ98 1225 aa26.84■■□□□ 1.89
USP39-204ENST00000409766 NSD3Q9BZ95 1437 aa26.84■■□□□ 1.89
USP39-204ENST00000409766 ALKQ9UM73 1620 aa26.84■■□□□ 1.89
USP39-204ENST00000409766 WDR43Q15061 677 aaKnown RBP eCLIP26.83■■□□□ 1.89
USP39-204ENST00000409766 PTPRMP28827 1452 aa26.83■■□□□ 1.89
USP39-204ENST00000409766 USP32Q8NFA0 1604 aa26.82■■□□□ 1.88
USP39-204ENST00000409766 YTHDC2Q9H6S0 1430 aaKnown RBP26.81■■□□□ 1.88
USP39-204ENST00000409766 TRHP20396 242 aaPredicted RBP26.81■■□□□ 1.88
USP39-204ENST00000409766 STK26Q9P289 416 aa26.81■■□□□ 1.88
USP39-204ENST00000409766 SENP3Q9H4L4 574 aaPredicted RBP26.8■■□□□ 1.88
USP39-204ENST00000409766 DNAJC5Q9H3Z4 198 aa26.78■■□□□ 1.88
USP39-204ENST00000409766 CDCA7LQ96GN5 454 aa26.77■■□□□ 1.88
USP39-204ENST00000409766 ZMYM3Q14202 1370 aa26.77■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms