RNA–Protein interactions for RNA: ENST00000409024.3

POLR1A-202, Transcript of RNA polymerase I subunit A, humanhuman

TSL 3

Gene POLR1A, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
POLR1A-202ENST00000409024 RPGRIP1LQ68CZ1 1315 aa13.8□□□□□ -0.2
POLR1A-202ENST00000409024 KIF1BO60333 1816 aa13.78□□□□□ -0.2
POLR1A-202ENST00000409024 RGL3Q3MIN7 710 aa13.78□□□□□ -0.2
POLR1A-202ENST00000409024 GPRASP1Q5JY77 1395 aa13.78□□□□□ -0.2
POLR1A-202ENST00000409024 HSPA5P11021 654 aaKnown RBP13.77□□□□□ -0.21
POLR1A-202ENST00000409024 LAMC1P11047 1609 aa13.77□□□□□ -0.21
POLR1A-202ENST00000409024 MYOM2P54296 1465 aa13.77□□□□□ -0.21
POLR1A-202ENST00000409024 KDM2AQ9Y2K7 1162 aa13.77□□□□□ -0.21
POLR1A-202ENST00000409024 PIK3C2BO00750 1634 aa13.76□□□□□ -0.21
POLR1A-202ENST00000409024 ADGRB3O60242 1522 aa13.76□□□□□ -0.21
POLR1A-202ENST00000409024 CPS1P31327 1500 aa13.76□□□□□ -0.21
POLR1A-202ENST00000409024 MROH2AA6NES4 1674 aa13.75□□□□□ -0.21
POLR1A-202ENST00000409024 TRPM1Q7Z4N2 1603 aa13.75□□□□□ -0.21
POLR1A-202ENST00000409024 RGS17Q9UGC6 210 aaPredicted RBP13.74□□□□□ -0.21
POLR1A-202ENST00000409024 KIAA1210Q9ULL0 1709 aa13.73□□□□□ -0.21
POLR1A-202ENST00000409024 ROCK2O75116 1388 aaKnown RBP13.73□□□□□ -0.21
POLR1A-202ENST00000409024 CARD11Q9BXL7 1154 aa13.73□□□□□ -0.21
POLR1A-202ENST00000409024 SENP3Q9H4L4 574 aaPredicted RBP13.73□□□□□ -0.21
POLR1A-202ENST00000409024 CEP170BQ9Y4F5 1589 aaPredicted RBP13.73□□□□□ -0.21
POLR1A-202ENST00000409024 ERVK-7P63135 1459 aa13.73□□□□□ -0.21
POLR1A-202ENST00000409024 USP47Q96K76 1375 aa13.72□□□□□ -0.21
POLR1A-202ENST00000409024 SYNMO15061 1565 aa13.72□□□□□ -0.21
POLR1A-202ENST00000409024 ZNF326Q5BKZ1 582 aaKnown RBP13.72□□□□□ -0.21
POLR1A-202ENST00000409024 NRXN1Q9ULB1 1477 aa13.72□□□□□ -0.21
POLR1A-202ENST00000409024 ZNF142P52746 1687 aaPredicted RBP13.72□□□□□ -0.21
POLR1A-202ENST00000409024 SLC24A1O60721 1099 aa13.71□□□□□ -0.21
POLR1A-202ENST00000409024 CLTCQ00610 1675 aaKnown RBP13.71□□□□□ -0.21
POLR1A-202ENST00000409024 ZFYVE9O95405 1425 aa13.71□□□□□ -0.22
POLR1A-202ENST00000409024 IFT172Q9UG01 1749 aa13.7□□□□□ -0.22
POLR1A-202ENST00000409024 MYO3AQ8NEV4 1616 aa13.7□□□□□ -0.22
POLR1A-202ENST00000409024 UGGT1Q9NYU2 1555 aa13.7□□□□□ -0.22
POLR1A-202ENST00000409024 VGFO15240 615 aaPredicted RBP13.69□□□□□ -0.22
POLR1A-202ENST00000409024 IDI1Q13907 227 aa13.69□□□□□ -0.22
POLR1A-202ENST00000409024 ANKLE2Q86XL3 938 aa13.68□□□□□ -0.22
POLR1A-202ENST00000409024 A2ML1A8K2U0 1454 aa13.67□□□□□ -0.22
POLR1A-202ENST00000409024 POLR1AO95602 1720 aaPredicted RBP13.67□□□□□ -0.22
POLR1A-202ENST00000409024 CCDC7Q96M83 1385 aa13.66□□□□□ -0.22
POLR1A-202ENST00000409024 PPLO60437 1756 aa13.66□□□□□ -0.22
POLR1A-202ENST00000409024 TMEM131LA2VDJ0 1609 aa13.65□□□□□ -0.22
POLR1A-202ENST00000409024 CHGAP10645 457 aaKnown RBP13.65□□□□□ -0.22
POLR1A-202ENST00000409024 POTEAQ6S8J7 498 aa13.65□□□□□ -0.22
POLR1A-202ENST00000409024 SETBP1Q9Y6X0 1596 aa13.65□□□□□ -0.22
POLR1A-202ENST00000409024 WASHC2AQ641Q2 1341 aa13.64□□□□□ -0.23
POLR1A-202ENST00000409024 ALKQ9UM73 1620 aa13.64□□□□□ -0.23
POLR1A-202ENST00000409024 KDM5AP29375 1690 aaKnown RBP13.64□□□□□ -0.23
POLR1A-202ENST00000409024 SCAF11Q99590 1463 aaKnown RBP13.64□□□□□ -0.23
POLR1A-202ENST00000409024 DDX10Q13206 875 aaKnown RBP13.64□□□□□ -0.23
POLR1A-202ENST00000409024 NBPF1Q3BBV0 1214 aa13.64□□□□□ -0.23
POLR1A-202ENST00000409024 FBXO31Q5XUX0 539 aaPredicted RBP13.64□□□□□ -0.23
POLR1A-202ENST00000409024 HIRIP3Q9BW71 556 aaPredicted RBP13.64□□□□□ -0.23
POLR1A-202ENST00000409024 CFAP65Q6ZU64 1925 aaKnown RBP13.64□□□□□ -0.23
POLR1A-202ENST00000409024 NEXMIFQ5QGS0 1516 aa13.64□□□□□ -0.23
POLR1A-202ENST00000409024 PIK3C2GO75747 1445 aa13.64□□□□□ -0.23
POLR1A-202ENST00000409024 EIF3AQ14152 1382 aaKnown RBP13.63□□□□□ -0.23
POLR1A-202ENST00000409024 THEMISQ8N1K5 641 aaPredicted RBP13.63□□□□□ -0.23
POLR1A-202ENST00000409024 C14orf93Q9H972 538 aaKnown RBP13.63□□□□□ -0.23
POLR1A-202ENST00000409024 ADGRF5Q8IZF2 1346 aa13.63□□□□□ -0.23
POLR1A-202ENST00000409024 ST20-MTHFSA0A0A6YYL1 179 aa13.62□□□□□ -0.23
POLR1A-202ENST00000409024 HDGFP51858 240 aaKnown RBP13.62□□□□□ -0.23
POLR1A-202ENST00000409024 TNRQ92752 1358 aa13.61□□□□□ -0.23
POLR1A-202ENST00000409024 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.61□□□□□ -0.23
POLR1A-202ENST00000409024 KIF7Q2M1P5 1343 aa13.61□□□□□ -0.23
POLR1A-202ENST00000409024 NLRP1Q9C000 1473 aa13.61□□□□□ -0.23
POLR1A-202ENST00000409024 IQGAP1P46940 1657 aa13.6□□□□□ -0.23
POLR1A-202ENST00000409024 MIER1Q8N108 512 aa13.6□□□□□ -0.23
POLR1A-202ENST00000409024 STAG3Q9UJ98 1225 aa13.6□□□□□ -0.23
POLR1A-202ENST00000409024 NPHP4O75161 1426 aaPredicted RBP13.59□□□□□ -0.23
POLR1A-202ENST00000409024 CDCA8Q53HL2 280 aa13.59□□□□□ -0.23
POLR1A-202ENST00000409024 C11orf95C9JLR9 678 aaPredicted RBP13.58□□□□□ -0.24
POLR1A-202ENST00000409024 CFAP70Q5T0N1 1121 aa13.58□□□□□ -0.24
POLR1A-202ENST00000409024 ANP32CO43423 234 aa13.57□□□□□ -0.24
POLR1A-202ENST00000409024 TMF1P82094 1093 aa13.57□□□□□ -0.24
POLR1A-202ENST00000409024 LRRC7Q96NW7 1537 aa13.57□□□□□ -0.24
POLR1A-202ENST00000409024 SBNO2Q9Y2G9 1366 aa13.57□□□□□ -0.24
POLR1A-202ENST00000409024 MED14O60244 1454 aa13.56□□□□□ -0.24
POLR1A-202ENST00000409024 TESK2Q96S53 571 aa13.56□□□□□ -0.24
POLR1A-202ENST00000409024 CCER2I3L3R5 266 aa13.55□□□□□ -0.24
POLR1A-202ENST00000409024 ADGRB1O14514 1584 aa13.54□□□□□ -0.24
POLR1A-202ENST00000409024 RIMS2Q9UQ26 1411 aa13.54□□□□□ -0.24
POLR1A-202ENST00000409024 MYO5BQ9ULV0 1848 aa13.53□□□□□ -0.24
POLR1A-202ENST00000409024 PUS7Q96PZ0 661 aaKnown RBP13.52□□□□□ -0.25
POLR1A-202ENST00000409024 UPF1Q92900 1129 aaKnown RBP eCLIP13.51□□□□□ -0.25
POLR1A-202ENST00000409024 FAM135BQ49AJ0 1406 aa13.5□□□□□ -0.25
POLR1A-202ENST00000409024 TMEM2Q9UHN6 1383 aa13.5□□□□□ -0.25
POLR1A-202ENST00000409024 UBR1Q8IWV7 1749 aa13.5□□□□□ -0.25
POLR1A-202ENST00000409024 KTN1Q86UP2 1357 aaKnown RBP13.49□□□□□ -0.25
POLR1A-202ENST00000409024 CENPJQ9HC77 1338 aaPredicted RBP13.49□□□□□ -0.25
POLR1A-202ENST00000409024 SRCAPQ6ZRS2 3230 aa13.49□□□□□ -0.25
POLR1A-202ENST00000409024 SLIT1O75093 1534 aa13.48□□□□□ -0.25
POLR1A-202ENST00000409024 STRCP1A6NGW2 1772 aa13.48□□□□□ -0.25
POLR1A-202ENST00000409024 SIRT1Q96EB6 747 aa13.47□□□□□ -0.25
POLR1A-202ENST00000409024 DLC1Q96QB1 1528 aa13.46□□□□□ -0.25
POLR1A-202ENST00000409024 EID1Q9Y6B2 187 aa13.46□□□□□ -0.25
POLR1A-202ENST00000409024 ARHGAP23Q9P227 1491 aa13.46□□□□□ -0.25
POLR1A-202ENST00000409024 SETD1AO15047 1707 aaKnown RBP13.45□□□□□ -0.26
POLR1A-202ENST00000409024 LRPPRCP42704 1394 aaKnown RBP13.45□□□□□ -0.26
POLR1A-202ENST00000409024 PLEKHG1Q9ULL1 1385 aa13.45□□□□□ -0.26
POLR1A-202ENST00000409024 NUTM2DQ5VT03 806 aaPredicted RBP13.44□□□□□ -0.26
POLR1A-202ENST00000409024 TRAK1Q9UPV9 953 aa13.44□□□□□ -0.26
POLR1A-202ENST00000409024 YTHDC2Q9H6S0 1430 aaKnown RBP13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms