RNA–Protein interactions for RNA: ENST00000409024.3

POLR1A-202, Transcript of RNA polymerase I subunit A, humanhuman

TSL 3

Gene POLR1A, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
POLR1A-202ENST00000409024 NISCHQ9Y2I1 1504 aa22.25■■□□□ 1.15
POLR1A-202ENST00000409024 ABCC9O60706 1549 aa19.82■□□□□ 0.76
POLR1A-202ENST00000409024 CCDC180Q9P1Z9 1646 aa19.47■□□□□ 0.71
POLR1A-202ENST00000409024 DNAJC5BQ9UF47 199 aa19.22■□□□□ 0.67
POLR1A-202ENST00000409024 ZCCHC6Q5VYS8 1495 aaKnown RBP18.68■□□□□ 0.58
POLR1A-202ENST00000409024 RB1CC1Q8TDY2 1594 aa18.57■□□□□ 0.56
POLR1A-202ENST00000409024 DCAF1Q9Y4B6 1507 aa18.52■□□□□ 0.56
POLR1A-202ENST00000409024 PABPN1Q86U42 306 aaKnown RBP eCLIP18.41■□□□□ 0.54
POLR1A-202ENST00000409024 MYO15BQ96JP2 1530 aa18.36■□□□□ 0.53
POLR1A-202ENST00000409024 NACADO15069 1562 aa18.3■□□□□ 0.52
POLR1A-202ENST00000409024 DCAF8L2P0C7V8 631 aa18.22■□□□□ 0.51
POLR1A-202ENST00000409024 DNAJC5Q9H3Z4 198 aa18.16■□□□□ 0.5
POLR1A-202ENST00000409024 UNC13AQ9UPW8 1703 aa18.03■□□□□ 0.48
POLR1A-202ENST00000409024 BICRAQ9NZM4 1560 aa18.01■□□□□ 0.47
POLR1A-202ENST00000409024 CECR2Q9BXF3 1484 aa17.95■□□□□ 0.46
POLR1A-202ENST00000409024 SHROOM4Q9ULL8 1493 aa17.88■□□□□ 0.45
POLR1A-202ENST00000409024 CC2D2AQ9P2K1 1620 aa17.84■□□□□ 0.45
POLR1A-202ENST00000409024 SCRIBQ14160 1630 aa17.72■□□□□ 0.43
POLR1A-202ENST00000409024 EIF4G1Q04637 1599 aaKnown RBP17.65■□□□□ 0.42
POLR1A-202ENST00000409024 CUX2O14529 1486 aa17.37■□□□□ 0.37
POLR1A-202ENST00000409024 SUPT5HO00267 1087 aaKnown RBP17.26■□□□□ 0.35
POLR1A-202ENST00000409024 RSF1Q96T23 1441 aaPredicted RBP17.21■□□□□ 0.35
POLR1A-202ENST00000409024 BAZ1AQ9NRL2 1556 aaPredicted RBP17.21■□□□□ 0.35
POLR1A-202ENST00000409024 ERCC6Q03468 1493 aa17.19■□□□□ 0.34
POLR1A-202ENST00000409024 MROH2BQ7Z745 1585 aa17.11■□□□□ 0.33
POLR1A-202ENST00000409024 TRIM41Q8WV44 630 aa17.09■□□□□ 0.33
POLR1A-202ENST00000409024 SMARCA4P51532 1647 aa17.08■□□□□ 0.32
POLR1A-202ENST00000409024 PEG3Q9GZU2 1588 aa16.96■□□□□ 0.31
POLR1A-202ENST00000409024 WIZO95785 1651 aa16.94■□□□□ 0.3
POLR1A-202ENST00000409024 NCAPD3P42695 1498 aa16.93■□□□□ 0.3
POLR1A-202ENST00000409024 SMARCA2P51531 1590 aa16.88■□□□□ 0.29
POLR1A-202ENST00000409024 TOP2AP11388 1531 aaKnown RBP16.86■□□□□ 0.29
POLR1A-202ENST00000409024 NESP48681 1621 aa16.82■□□□□ 0.28
POLR1A-202ENST00000409024 ATAD2BQ9ULI0 1458 aa16.82■□□□□ 0.28
POLR1A-202ENST00000409024 THOC2Q8NI27 1593 aaKnown RBP16.73■□□□□ 0.27
POLR1A-202ENST00000409024 HMGXB3Q12766 1538 aa16.72■□□□□ 0.27
POLR1A-202ENST00000409024 BAZ1BQ9UIG0 1483 aaKnown RBP16.72■□□□□ 0.27
POLR1A-202ENST00000409024 CCDC88BA6NC98 1476 aa16.65■□□□□ 0.26
POLR1A-202ENST00000409024 PDS5BQ9NTI5 1447 aa16.61■□□□□ 0.25
POLR1A-202ENST00000409024 LAMC3Q9Y6N6 1575 aa16.6■□□□□ 0.25
POLR1A-202ENST00000409024 CHIC1Q5VXU3 224 aa16.59■□□□□ 0.25
POLR1A-202ENST00000409024 OSCARQ8IYS5 282 aa16.56■□□□□ 0.24
POLR1A-202ENST00000409024 KIF21AQ7Z4S6 1674 aa16.53■□□□□ 0.24
POLR1A-202ENST00000409024 MRC2Q9UBG0 1479 aa16.45■□□□□ 0.22
POLR1A-202ENST00000409024 CADPSQ9ULU8 1353 aa16.4■□□□□ 0.22
POLR1A-202ENST00000409024 WDR62O43379 1518 aa16.4■□□□□ 0.22
POLR1A-202ENST00000409024 CFTRP13569 1480 aa16.34■□□□□ 0.21
POLR1A-202ENST00000409024 AEBP2Q6ZN18 517 aaPredicted RBP16.27■□□□□ 0.2
POLR1A-202ENST00000409024 RIMBP3CA6NJZ7 1639 aa16.27■□□□□ 0.19
POLR1A-202ENST00000409024 RIMBP3BA6NNM3 1639 aa16.27■□□□□ 0.19
POLR1A-202ENST00000409024 RIMBP3Q9UFD9 1639 aa16.27■□□□□ 0.19
POLR1A-202ENST00000409024 CEP164Q9UPV0 1460 aa16.25■□□□□ 0.19
POLR1A-202ENST00000409024 TRHP20396 242 aaPredicted RBP16.25■□□□□ 0.19
POLR1A-202ENST00000409024 PRDM2Q13029 1718 aa16.22■□□□□ 0.19
POLR1A-202ENST00000409024 WRNQ14191 1432 aaPredicted RBP eCLIP16.22■□□□□ 0.19
POLR1A-202ENST00000409024 CYB5RLQ6IPT4 315 aa16.2■□□□□ 0.18
POLR1A-202ENST00000409024 ABCC8Q09428 1581 aa16.19■□□□□ 0.18
POLR1A-202ENST00000409024 FANCD2Q9BXW9 1451 aa16.18■□□□□ 0.18
POLR1A-202ENST00000409024 ARHGEF11O15085 1522 aa16.18■□□□□ 0.18
POLR1A-202ENST00000409024 TOP2BQ02880 1626 aa16.1■□□□□ 0.17
POLR1A-202ENST00000409024 EEA1Q15075 1411 aa16.1■□□□□ 0.17
POLR1A-202ENST00000409024 BIVM-ERCC5R4GMW8 1640 aa16.08■□□□□ 0.17
POLR1A-202ENST00000409024 SYNJ1O43426 1573 aa16.08■□□□□ 0.16
POLR1A-202ENST00000409024 URB2Q14146 1524 aaKnown RBP16.07■□□□□ 0.16
POLR1A-202ENST00000409024 CUX1P39880 1505 aa16.01■□□□□ 0.15
POLR1A-202ENST00000409024 ZNF608Q9ULD9 1512 aaPredicted RBP15.98■□□□□ 0.15
POLR1A-202ENST00000409024 IFT140Q96RY7 1462 aa15.97■□□□□ 0.15
POLR1A-202ENST00000409024 ARAP1Q96P48 1450 aa15.97■□□□□ 0.15
POLR1A-202ENST00000409024 DNMBPQ6XZF7 1577 aa15.94■□□□□ 0.14
POLR1A-202ENST00000409024 CSRNP3Q8WYN3 585 aa15.91■□□□□ 0.14
POLR1A-202ENST00000409024 SOGA1O94964 1423 aa15.91■□□□□ 0.14
POLR1A-202ENST00000409024 FBLN2P98095 1184 aa15.89■□□□□ 0.13
POLR1A-202ENST00000409024 TOPBP1Q92547 1522 aa15.89■□□□□ 0.13
POLR1A-202ENST00000409024 FAM9AQ8IZU1 332 aaPredicted RBP15.88■□□□□ 0.13
POLR1A-202ENST00000409024 FGD5Q6ZNL6 1462 aa15.85■□□□□ 0.13
POLR1A-202ENST00000409024 LOC105371045A0A1W2PR82 267 aa15.85■□□□□ 0.13
POLR1A-202ENST00000409024 KIF27Q86VH2 1401 aa15.85■□□□□ 0.13
POLR1A-202ENST00000409024 RUSC2Q8N2Y8 1516 aa15.82■□□□□ 0.12
POLR1A-202ENST00000409024 EIF4G3O43432 1585 aaKnown RBP15.81■□□□□ 0.12
POLR1A-202ENST00000409024 CHD1O14646 1710 aa15.8■□□□□ 0.12
POLR1A-202ENST00000409024 AQRO60306 1485 aaKnown RBP eCLIP15.79■□□□□ 0.126e-12■■■■■ 50.2
POLR1A-202ENST00000409024 KIF21BO75037 1637 aa15.79■□□□□ 0.12
POLR1A-202ENST00000409024 ABCA10Q8WWZ4 1543 aa15.78■□□□□ 0.12
POLR1A-202ENST00000409024 POLA1P09884 1462 aaPredicted RBP15.78■□□□□ 0.12
POLR1A-202ENST00000409024 GOLGA3Q08378 1498 aa15.76■□□□□ 0.11
POLR1A-202ENST00000409024 TNIKQ9UKE5 1360 aa15.74■□□□□ 0.11
POLR1A-202ENST00000409024 ERICH3Q5RHP9 1530 aa15.72■□□□□ 0.11
POLR1A-202ENST00000409024 PRXQ9BXM0 1461 aa15.71■□□□□ 0.11
POLR1A-202ENST00000409024 IGF1RP08069 1367 aa15.68■□□□□ 0.1
POLR1A-202ENST00000409024 RAD54L2Q9Y4B4 1467 aa15.67■□□□□ 0.1
POLR1A-202ENST00000409024 CHMP7Q8WUX9 453 aaPredicted RBP15.67■□□□□ 0.1
POLR1A-202ENST00000409024 WDR97A6NE52 1622 aa15.67■□□□□ 0.1
POLR1A-202ENST00000409024 TARBP1Q13395 1621 aaKnown RBP15.66■□□□□ 0.1
POLR1A-202ENST00000409024 CLASP1Q7Z460 1538 aa15.63■□□□□ 0.09
POLR1A-202ENST00000409024 UBTFP17480 764 aaKnown RBP15.63■□□□□ 0.09
POLR1A-202ENST00000409024 RAPGEF2Q9Y4G8 1499 aa15.62■□□□□ 0.09
POLR1A-202ENST00000409024 ILDR1Q86SU0 546 aaPredicted RBP15.61■□□□□ 0.09
POLR1A-202ENST00000409024 CARMIL1Q5VZK9 1371 aa15.61■□□□□ 0.09
POLR1A-202ENST00000409024 TDRD9Q8NDG6 1382 aaKnown RBP15.61■□□□□ 0.09
POLR1A-202ENST00000409024 ABCA5Q8WWZ7 1642 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 313.9 ms