RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 ANKLE2Q86XL3 938 aa23.17■■□□□ 1.3
HMGA1-204ENST00000401473 TXNDC2Q86VQ3 553 aa23.15■■□□□ 1.3
HMGA1-204ENST00000401473 ZFYVE9O95405 1425 aa23.14■■□□□ 1.3
HMGA1-204ENST00000401473 NEURL4Q96JN8 1562 aa23.13■■□□□ 1.29
HMGA1-204ENST00000401473 RIMS2Q9UQ26 1411 aa23.13■■□□□ 1.29
HMGA1-204ENST00000401473 SCAF11Q99590 1463 aaKnown RBP23.11■■□□□ 1.29
HMGA1-204ENST00000401473 L3MBTL2Q969R5 705 aa23.11■■□□□ 1.29
HMGA1-204ENST00000401473 EID1Q9Y6B2 187 aa23.11■■□□□ 1.29
HMGA1-204ENST00000401473 RPGRIP1LQ68CZ1 1315 aa23.1■■□□□ 1.29
HMGA1-204ENST00000401473 NEXMIFQ5QGS0 1516 aa23.1■■□□□ 1.29
HMGA1-204ENST00000401473 DCAF11Q8TEB1 546 aa23.09■■□□□ 1.29
HMGA1-204ENST00000401473 SENP3Q9H4L4 574 aaPredicted RBP23.09■■□□□ 1.29
HMGA1-204ENST00000401473 HDGFP51858 240 aaKnown RBP23.07■■□□□ 1.28
HMGA1-204ENST00000401473 KDM2AQ9Y2K7 1162 aa23.07■■□□□ 1.28
HMGA1-204ENST00000401473 MED14O60244 1454 aa23.07■■□□□ 1.28
HMGA1-204ENST00000401473 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.07■■□□□ 1.28
HMGA1-204ENST00000401473 POLR1AO95602 1720 aaPredicted RBP23.06■■□□□ 1.28
HMGA1-204ENST00000401473 PPLO60437 1756 aa23.06■■□□□ 1.28
HMGA1-204ENST00000401473 ADGRF5Q8IZF2 1346 aa23.06■■□□□ 1.28
HMGA1-204ENST00000401473 NPHP4O75161 1426 aaPredicted RBP23.05■■□□□ 1.28
HMGA1-204ENST00000401473 VGFO15240 615 aaPredicted RBP23.05■■□□□ 1.28
HMGA1-204ENST00000401473 DMRT2Q9Y5R5 561 aa23.05■■□□□ 1.28
HMGA1-204ENST00000401473 IFT172Q9UG01 1749 aa23.04■■□□□ 1.28
HMGA1-204ENST00000401473 PPP1R15AO75807 674 aaPredicted RBP23.04■■□□□ 1.28
HMGA1-204ENST00000401473 TONSLQ96HA7 1378 aa23.01■■□□□ 1.27
HMGA1-204ENST00000401473 PLEKHG1Q9ULL1 1385 aa23■■□□□ 1.27
HMGA1-204ENST00000401473 SLC26A8Q96RN1 970 aa22.99■■□□□ 1.27
HMGA1-204ENST00000401473 IQGAP1P46940 1657 aa22.99■■□□□ 1.27
HMGA1-204ENST00000401473 STAC3Q96MF2 364 aa22.98■■□□□ 1.27
HMGA1-204ENST00000401473 BCANQ96GW7 911 aa22.97■■□□□ 1.27
HMGA1-204ENST00000401473 TIMELESSQ9UNS1 1208 aa22.96■■□□□ 1.27
HMGA1-204ENST00000401473 MYOM2P54296 1465 aa22.96■■□□□ 1.27
HMGA1-204ENST00000401473 NRXN1Q9ULB1 1477 aa22.95■■□□□ 1.27
HMGA1-204ENST00000401473 ADAMTS13Q76LX8 1427 aa22.94■■□□□ 1.26
HMGA1-204ENST00000401473 PIK3C2GO75747 1445 aa22.94■■□□□ 1.26
HMGA1-204ENST00000401473 NRXN3Q9Y4C0 1643 aa22.94■■□□□ 1.26
HMGA1-204ENST00000401473 NBPF8Q3BBV2 869 aa22.93■■□□□ 1.26
HMGA1-204ENST00000401473 ZNF335Q9H4Z2 1342 aaPredicted RBP22.92■■□□□ 1.26
HMGA1-204ENST00000401473 CFAP70Q5T0N1 1121 aa22.92■■□□□ 1.26
HMGA1-204ENST00000401473 SETBP1Q9Y6X0 1596 aa22.91■■□□□ 1.26
HMGA1-204ENST00000401473 C14orf93Q9H972 538 aaKnown RBP22.9■■□□□ 1.26
HMGA1-204ENST00000401473 TBX22Q9Y458 520 aa22.9■■□□□ 1.26
HMGA1-204ENST00000401473 PRAG1Q86YV5 1406 aa22.9■■□□□ 1.26
HMGA1-204ENST00000401473 ALKQ9UM73 1620 aa22.88■■□□□ 1.25
HMGA1-204ENST00000401473 METP08581 1390 aa22.87■■□□□ 1.25
HMGA1-204ENST00000401473 TMEM132EQ6IEE7 984 aa22.86■■□□□ 1.25
HMGA1-204ENST00000401473 NBPF1Q3BBV0 1214 aa22.85■■□□□ 1.25
HMGA1-204ENST00000401473 SETD1AO15047 1707 aaKnown RBP22.85■■□□□ 1.25
HMGA1-204ENST00000401473 LTBP4Q8N2S1 1624 aa22.82■■□□□ 1.24
HMGA1-204ENST00000401473 DIP2AQ14689 1571 aa22.81■■□□□ 1.24
HMGA1-204ENST00000401473 STRCP1A6NGW2 1772 aa22.81■■□□□ 1.24
HMGA1-204ENST00000401473 PTPRUQ92729 1446 aa22.81■■□□□ 1.24
HMGA1-204ENST00000401473 KCNA6P17658 529 aa22.8■■□□□ 1.24
HMGA1-204ENST00000401473 ASXL1Q8IXJ9 1541 aa22.79■■□□□ 1.24
HMGA1-204ENST00000401473 AMOTL2Q9Y2J4 779 aa22.78■■□□□ 1.24
HMGA1-204ENST00000401473 CHD2O14647 1828 aaKnown RBP22.78■■□□□ 1.24
HMGA1-204ENST00000401473 PIK3R4Q99570 1358 aa22.78■■□□□ 1.24
HMGA1-204ENST00000401473 ADGRB1O14514 1584 aa22.77■■□□□ 1.24
HMGA1-204ENST00000401473 TRPM1Q7Z4N2 1603 aa22.77■■□□□ 1.24
HMGA1-204ENST00000401473 KIAA1210Q9ULL0 1709 aa22.76■■□□□ 1.23
HMGA1-204ENST00000401473 STK26Q9P289 416 aa22.76■■□□□ 1.23
HMGA1-204ENST00000401473 LAMC1P11047 1609 aa22.76■■□□□ 1.23
HMGA1-204ENST00000401473 RBM33Q96EV2 1170 aaKnown RBP22.74■■□□□ 1.23
HMGA1-204ENST00000401473 NWD1Q149M9 1564 aa22.73■■□□□ 1.23
HMGA1-204ENST00000401473 ROCK2O75116 1388 aaKnown RBP22.72■■□□□ 1.23
HMGA1-204ENST00000401473 YTHDC2Q9H6S0 1430 aaKnown RBP22.72■■□□□ 1.23
HMGA1-204ENST00000401473 TRAK1Q9UPV9 953 aa22.71■■□□□ 1.23
HMGA1-204ENST00000401473 CPS1P31327 1500 aa22.71■■□□□ 1.23
HMGA1-204ENST00000401473 LRRC7Q96NW7 1537 aa22.71■■□□□ 1.23
HMGA1-204ENST00000401473 RALGAPBQ86X10 1494 aa22.71■■□□□ 1.23
HMGA1-204ENST00000401473 LRPPRCP42704 1394 aaKnown RBP22.71■■□□□ 1.23
HMGA1-204ENST00000401473 ABCC11Q96J66 1382 aa22.7■■□□□ 1.22
HMGA1-204ENST00000401473 CERKQ8TCT0 537 aa22.7■■□□□ 1.22
HMGA1-204ENST00000401473 GPRASP1Q5JY77 1395 aa22.69■■□□□ 1.22
HMGA1-204ENST00000401473 XRN1Q8IZH2 1706 aaKnown RBP22.69■■□□□ 1.22
HMGA1-204ENST00000401473 PROSER2Q86WR7 435 aaPredicted RBP22.68■■□□□ 1.22
HMGA1-204ENST00000401473 CARD11Q9BXL7 1154 aa22.68■■□□□ 1.22
HMGA1-204ENST00000401473 NKTRP30414 1462 aaKnown RBP22.68■■□□□ 1.22
HMGA1-204ENST00000401473 ROBO2Q9HCK4 1378 aa22.67■■□□□ 1.22
HMGA1-204ENST00000401473 TMEM94Q12767 1356 aa22.67■■□□□ 1.22
HMGA1-204ENST00000401473 WAPLQ7Z5K2 1190 aa22.66■■□□□ 1.22
HMGA1-204ENST00000401473 TECPR2O15040 1411 aa22.65■■□□□ 1.22
HMGA1-204ENST00000401473 ZEB1P37275 1124 aaPredicted RBP22.63■■□□□ 1.21
HMGA1-204ENST00000401473 PLEKHH1Q9ULM0 1364 aa22.62■■□□□ 1.21
HMGA1-204ENST00000401473 SIRT1Q96EB6 747 aa22.62■■□□□ 1.21
HMGA1-204ENST00000401473 PRAM1Q96QH2 718 aa22.62■■□□□ 1.21
HMGA1-204ENST00000401473 PTCH1Q13635 1447 aa22.62■■□□□ 1.21
HMGA1-204ENST00000401473 XIRP1Q702N8 1843 aaKnown RBP22.61■■□□□ 1.21
HMGA1-204ENST00000401473 KNDC1Q76NI1 1749 aa22.61■■□□□ 1.21
HMGA1-204ENST00000401473 SAFB2Q14151 953 aaKnown RBP eCLIP22.6■■□□□ 1.21
HMGA1-204ENST00000401473 ARHGEF28Q8N1W1 1705 aaKnown RBP22.58■■□□□ 1.21
HMGA1-204ENST00000401473 DLC1Q96QB1 1528 aa22.58■■□□□ 1.21
HMGA1-204ENST00000401473 FAM135BQ49AJ0 1406 aa22.58■■□□□ 1.2
HMGA1-204ENST00000401473 POGKQ9P215 609 aa22.57■■□□□ 1.2
HMGA1-204ENST00000401473 ST20-MTHFSA0A0A6YYL1 179 aa22.55■■□□□ 1.2
HMGA1-204ENST00000401473 NCOA3Q9Y6Q9 1424 aa22.55■■□□□ 1.2
HMGA1-204ENST00000401473 IQSEC2Q5JU85 1478 aa22.54■■□□□ 1.2
HMGA1-204ENST00000401473 C14orf37Q86TY3 774 aa22.54■■□□□ 1.2
HMGA1-204ENST00000401473 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.54■■□□□ 1.2
HMGA1-204ENST00000401473 USP47Q96K76 1375 aa22.54■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms