RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 RGL3Q3MIN7 710 aa20.33■□□□□ 0.85
SKA1-202ENST00000398452 CFAP65Q6ZU64 1925 aaKnown RBP20.33■□□□□ 0.84
SKA1-202ENST00000398452 L3MBTL2Q969R5 705 aa20.32■□□□□ 0.84
SKA1-202ENST00000398452 ZNF326Q5BKZ1 582 aaKnown RBP20.31■□□□□ 0.84
SKA1-202ENST00000398452 MYO3AQ8NEV4 1616 aa20.31■□□□□ 0.84
SKA1-202ENST00000398452 TNRQ92752 1358 aa20.3■□□□□ 0.84
SKA1-202ENST00000398452 CLTCL1P53675 1640 aa20.29■□□□□ 0.84
SKA1-202ENST00000398452 SPINK5Q9NQ38 1064 aaPredicted RBP20.29■□□□□ 0.84
SKA1-202ENST00000398452 PPP1R15AO75807 674 aaPredicted RBP20.28■□□□□ 0.84
SKA1-202ENST00000398452 CAPN15O75808 1086 aa20.28■□□□□ 0.84
SKA1-202ENST00000398452 DCAF11Q8TEB1 546 aa20.28■□□□□ 0.84
SKA1-202ENST00000398452 SPATA31D1Q6ZQQ2 1576 aa20.28■□□□□ 0.84
SKA1-202ENST00000398452 CEP170BQ9Y4F5 1589 aaPredicted RBP20.27■□□□□ 0.84
SKA1-202ENST00000398452 IDI1Q13907 227 aa20.27■□□□□ 0.84
SKA1-202ENST00000398452 STAC3Q96MF2 364 aa20.27■□□□□ 0.84
SKA1-202ENST00000398452 KIF1BO60333 1816 aa20.26■□□□□ 0.83
SKA1-202ENST00000398452 KDM2AQ9Y2K7 1162 aa20.26■□□□□ 0.83
SKA1-202ENST00000398452 ZNF335Q9H4Z2 1342 aaPredicted RBP20.26■□□□□ 0.83
SKA1-202ENST00000398452 UGGT1Q9NYU2 1555 aa20.25■□□□□ 0.83
SKA1-202ENST00000398452 SYNMO15061 1565 aa20.25■□□□□ 0.83
SKA1-202ENST00000398452 SPATA31E1Q6ZUB1 1445 aa20.23■□□□□ 0.83
SKA1-202ENST00000398452 RPGRIP1LQ68CZ1 1315 aa20.23■□□□□ 0.83
SKA1-202ENST00000398452 ZNF142P52746 1687 aaPredicted RBP20.22■□□□□ 0.83
SKA1-202ENST00000398452 NEURL4Q96JN8 1562 aa20.22■□□□□ 0.83
SKA1-202ENST00000398452 A2ML1A8K2U0 1454 aa20.22■□□□□ 0.83
SKA1-202ENST00000398452 PIK3C2BO00750 1634 aa20.2■□□□□ 0.82
SKA1-202ENST00000398452 LTBP4Q8N2S1 1624 aa20.2■□□□□ 0.82
SKA1-202ENST00000398452 NLRP1Q9C000 1473 aa20.2■□□□□ 0.82
SKA1-202ENST00000398452 HDGFP51858 240 aaKnown RBP20.2■□□□□ 0.82
SKA1-202ENST00000398452 DSG3P32926 999 aa20.19■□□□□ 0.82
SKA1-202ENST00000398452 ADGRB3O60242 1522 aa20.18■□□□□ 0.82
SKA1-202ENST00000398452 VGFO15240 615 aaPredicted RBP20.16■□□□□ 0.82
SKA1-202ENST00000398452 ANKLE2Q86XL3 938 aa20.14■□□□□ 0.81
SKA1-202ENST00000398452 THEMISQ8N1K5 641 aaPredicted RBP20.14■□□□□ 0.81
SKA1-202ENST00000398452 UBAP1LF5GYI3 381 aa20.13■□□□□ 0.81
SKA1-202ENST00000398452 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.13■□□□□ 0.81
SKA1-202ENST00000398452 TMEM131LA2VDJ0 1609 aa20.11■□□□□ 0.81
SKA1-202ENST00000398452 MYOM2P54296 1465 aa20.1■□□□□ 0.81
SKA1-202ENST00000398452 NBPF8Q3BBV2 869 aa20.09■□□□□ 0.81
SKA1-202ENST00000398452 EID1Q9Y6B2 187 aa20.09■□□□□ 0.81
SKA1-202ENST00000398452 PRAG1Q86YV5 1406 aa20.09■□□□□ 0.81
SKA1-202ENST00000398452 RIMS2Q9UQ26 1411 aa20.07■□□□□ 0.8
SKA1-202ENST00000398452 POLR1AO95602 1720 aaPredicted RBP20.07■□□□□ 0.8
SKA1-202ENST00000398452 ROCK2O75116 1388 aaKnown RBP20.07■□□□□ 0.8
SKA1-202ENST00000398452 NUTM2DQ5VT03 806 aaPredicted RBP20.06■□□□□ 0.8
SKA1-202ENST00000398452 BCANQ96GW7 911 aa20.06■□□□□ 0.8
SKA1-202ENST00000398452 KDM5AP29375 1690 aaKnown RBP20.06■□□□□ 0.8
SKA1-202ENST00000398452 CARD11Q9BXL7 1154 aa20.05■□□□□ 0.8
SKA1-202ENST00000398452 DISP3Q9P2K9 1392 aa20.05■□□□□ 0.8
SKA1-202ENST00000398452 IQSEC2Q5JU85 1478 aa20.05■□□□□ 0.8
SKA1-202ENST00000398452 ADGRF5Q8IZF2 1346 aa20.04■□□□□ 0.8
SKA1-202ENST00000398452 NEXMIFQ5QGS0 1516 aa20.04■□□□□ 0.8
SKA1-202ENST00000398452 TMEM2Q9UHN6 1383 aa20.04■□□□□ 0.8
SKA1-202ENST00000398452 RALGAPBQ86X10 1494 aa20.04■□□□□ 0.8
SKA1-202ENST00000398452 NPHP4O75161 1426 aaPredicted RBP20.03■□□□□ 0.8
SKA1-202ENST00000398452 ZFYVE9O95405 1425 aa20.03■□□□□ 0.8
SKA1-202ENST00000398452 PPLO60437 1756 aa20.03■□□□□ 0.8
SKA1-202ENST00000398452 UBR1Q8IWV7 1749 aa20.02■□□□□ 0.8
SKA1-202ENST00000398452 EIF4G2P78344 907 aaKnown RBP eCLIP20.02■□□□□ 0.8
SKA1-202ENST00000398452 PIP4K2BP78356 416 aa20.02■□□□□ 0.8
SKA1-202ENST00000398452 MYO5BQ9ULV0 1848 aa20.02■□□□□ 0.79
SKA1-202ENST00000398452 IFT172Q9UG01 1749 aa20.02■□□□□ 0.79
SKA1-202ENST00000398452 SAMD1Q6SPF0 538 aaPredicted RBP20.01■□□□□ 0.79
SKA1-202ENST00000398452 TXNDC2Q86VQ3 553 aa20.01■□□□□ 0.79
SKA1-202ENST00000398452 ZNF219Q9P2Y4 722 aaPredicted RBP19.99■□□□□ 0.79
SKA1-202ENST00000398452 NRXN1Q9ULB1 1477 aa19.99■□□□□ 0.79
SKA1-202ENST00000398452 CFAP70Q5T0N1 1121 aa19.98■□□□□ 0.79
SKA1-202ENST00000398452 PIK3C2GO75747 1445 aa19.98■□□□□ 0.79
SKA1-202ENST00000398452 ZNF316A6NFI3 1004 aaPredicted RBP19.97■□□□□ 0.79
SKA1-202ENST00000398452 C14orf93Q9H972 538 aaKnown RBP19.97■□□□□ 0.79
SKA1-202ENST00000398452 TRPM1Q7Z4N2 1603 aa19.96■□□□□ 0.79
SKA1-202ENST00000398452 LTKP29376 864 aa19.96■□□□□ 0.79
SKA1-202ENST00000398452 SLIT1O75093 1534 aa19.95■□□□□ 0.78
SKA1-202ENST00000398452 IQGAP1P46940 1657 aa19.94■□□□□ 0.78
SKA1-202ENST00000398452 MED14O60244 1454 aa19.94■□□□□ 0.78
SKA1-202ENST00000398452 TOM1O60784 492 aa19.94■□□□□ 0.78
SKA1-202ENST00000398452 NBPF1Q3BBV0 1214 aa19.94■□□□□ 0.78
SKA1-202ENST00000398452 KIAA1210Q9ULL0 1709 aa19.93■□□□□ 0.78
SKA1-202ENST00000398452 CPS1P31327 1500 aa19.93■□□□□ 0.78
SKA1-202ENST00000398452 ILDR2Q71H61 639 aa19.93■□□□□ 0.78
SKA1-202ENST00000398452 EIF3AQ14152 1382 aaKnown RBP19.93■□□□□ 0.78
SKA1-202ENST00000398452 GPRASP1Q5JY77 1395 aa19.93■□□□□ 0.78
SKA1-202ENST00000398452 USP47Q96K76 1375 aa19.93■□□□□ 0.78
SKA1-202ENST00000398452 ARHGAP23Q9P227 1491 aa19.92■□□□□ 0.78
SKA1-202ENST00000398452 LAMC1P11047 1609 aa19.92■□□□□ 0.78
SKA1-202ENST00000398452 PLEKHG1Q9ULL1 1385 aa19.92■□□□□ 0.78
SKA1-202ENST00000398452 SCAF11Q99590 1463 aaKnown RBP19.92■□□□□ 0.78
SKA1-202ENST00000398452 HSPA5P11021 654 aaKnown RBP19.91■□□□□ 0.78
SKA1-202ENST00000398452 HSPA1LP34931 641 aa19.9■□□□□ 0.78
SKA1-202ENST00000398452 SETBP1Q9Y6X0 1596 aa19.88■□□□□ 0.77
SKA1-202ENST00000398452 STRCP1A6NGW2 1772 aa19.86■□□□□ 0.77
SKA1-202ENST00000398452 SLC24A1O60721 1099 aa19.86■□□□□ 0.77
SKA1-202ENST00000398452 TMEM132EQ6IEE7 984 aa19.86■□□□□ 0.77
SKA1-202ENST00000398452 HIRIP3Q9BW71 556 aaPredicted RBP19.86■□□□□ 0.77
SKA1-202ENST00000398452 ALKQ9UM73 1620 aa19.85■□□□□ 0.77
SKA1-202ENST00000398452 MYCNP04198 464 aaPredicted RBP19.84■□□□□ 0.77
SKA1-202ENST00000398452 TRAK1Q9UPV9 953 aa19.84■□□□□ 0.77
SKA1-202ENST00000398452 LRRC7Q96NW7 1537 aa19.83■□□□□ 0.77
SKA1-202ENST00000398452 ST20-MTHFSA0A0A6YYL1 179 aa19.83■□□□□ 0.77
SKA1-202ENST00000398452 SLC26A8Q96RN1 970 aa19.83■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms