RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 SALL2Q9Y467 1007 aaPredicted RBP15.11■□□□□ 0.01
CUX1-204ENST00000393824 ERVK-7P63135 1459 aa15.11■□□□□ 0.01
CUX1-204ENST00000393824 PREX1Q8TCU6 1659 aa15.1■□□□□ 0.01
CUX1-204ENST00000393824 CHGAP10645 457 aaKnown RBP15.1■□□□□ 0.01
CUX1-204ENST00000393824 ESF1Q9H501 851 aaKnown RBP15.1■□□□□ 0.01
CUX1-204ENST00000393824 MROH2AA6NES4 1674 aa15.09■□□□□ 0.01
CUX1-204ENST00000393824 PIK3C2BO00750 1634 aa15.08■□□□□ 0
CUX1-204ENST00000393824 NUTM2DQ5VT03 806 aaPredicted RBP15.08■□□□□ 0
CUX1-204ENST00000393824 PAK3O75914 559 aaPredicted RBP15.07■□□□□ 0
CUX1-204ENST00000393824 SENP3Q9H4L4 574 aaPredicted RBP15.06■□□□□ 0
CUX1-204ENST00000393824 MADDQ8WXG6 1647 aa15.06■□□□□ 0
CUX1-204ENST00000393824 SPATA31D1Q6ZQQ2 1576 aa15.06■□□□□ 0
CUX1-204ENST00000393824 ADGRB3O60242 1522 aa15.06■□□□□ 0
CUX1-204ENST00000393824 NBR1Q14596 966 aa15.05■□□□□ 0
CUX1-204ENST00000393824 FER1L4A9Z1Z3 1794 aa15.04■□□□□ -0
CUX1-204ENST00000393824 NBPF1Q3BBV0 1214 aa15.04■□□□□ -0
CUX1-204ENST00000393824 B4GALNT3Q6L9W6 998 aa15.04■□□□□ -0
CUX1-204ENST00000393824 ADGRF5Q8IZF2 1346 aa15.04■□□□□ -0
CUX1-204ENST00000393824 UHRF1BP1Q6BDS2 1440 aa15.03■□□□□ -0
CUX1-204ENST00000393824 PRAG1Q86YV5 1406 aa15.03■□□□□ -0
CUX1-204ENST00000393824 SLC52A1Q9NWF4 448 aa15.03■□□□□ -0
CUX1-204ENST00000393824 C3P01024 1663 aa15.02□□□□□ -0.01
CUX1-204ENST00000393824 IPO9Q96P70 1041 aaKnown RBP15.01□□□□□ -0.01
CUX1-204ENST00000393824 KIF1BO60333 1816 aa15.01□□□□□ -0.01
CUX1-204ENST00000393824 ADAMTSL3P82987 1691 aa15.01□□□□□ -0.01
CUX1-204ENST00000393824 MYO5BQ9ULV0 1848 aa15□□□□□ -0.01
CUX1-204ENST00000393824 TNRQ92752 1358 aa15□□□□□ -0.01
CUX1-204ENST00000393824 TMEM131LA2VDJ0 1609 aa15□□□□□ -0.01
CUX1-204ENST00000393824 RIMS1Q86UR5 1692 aaKnown RBP15□□□□□ -0.01
CUX1-204ENST00000393824 ZBED9Q6R2W3 1325 aa15□□□□□ -0.01
CUX1-204ENST00000393824 RTL5Q5HYW3 569 aaPredicted RBP14.99□□□□□ -0.01
CUX1-204ENST00000393824 CCDC136Q96JN2 1154 aa14.99□□□□□ -0.01
CUX1-204ENST00000393824 NEURL4Q96JN8 1562 aa14.98□□□□□ -0.01
CUX1-204ENST00000393824 EIF5BO60841 1220 aaKnown RBP14.98□□□□□ -0.01
CUX1-204ENST00000393824 WASHC2AQ641Q2 1341 aa14.98□□□□□ -0.01
CUX1-204ENST00000393824 A2ML1A8K2U0 1454 aa14.97□□□□□ -0.01
CUX1-204ENST00000393824 ANP32AP39687 249 aaKnown RBP14.97□□□□□ -0.01
CUX1-204ENST00000393824 EIF4G2P78344 907 aaKnown RBP eCLIP14.97□□□□□ -0.011e-6■■■■■ 32.2
CUX1-204ENST00000393824 HSPA5P11021 654 aaKnown RBP14.97□□□□□ -0.01
CUX1-204ENST00000393824 RALGAPBQ86X10 1494 aa14.97□□□□□ -0.01
CUX1-204ENST00000393824 NEXMIFQ5QGS0 1516 aa14.97□□□□□ -0.01
CUX1-204ENST00000393824 IFT172Q9UG01 1749 aa14.96□□□□□ -0.01
CUX1-204ENST00000393824 CFAP70Q5T0N1 1121 aa14.96□□□□□ -0.01
CUX1-204ENST00000393824 STAG3Q9UJ98 1225 aa14.95□□□□□ -0.02
CUX1-204ENST00000393824 ZBTB47Q9UFB7 747 aaPredicted RBP14.95□□□□□ -0.02
CUX1-204ENST00000393824 TRPM1Q7Z4N2 1603 aa14.95□□□□□ -0.02
CUX1-204ENST00000393824 ROCK2O75116 1388 aaKnown RBP14.94□□□□□ -0.02
CUX1-204ENST00000393824 CARD11Q9BXL7 1154 aa14.94□□□□□ -0.02
CUX1-204ENST00000393824 PPLO60437 1756 aa14.94□□□□□ -0.02
CUX1-204ENST00000393824 NRXN1Q9ULB1 1477 aa14.94□□□□□ -0.02
CUX1-204ENST00000393824 MYOM2P54296 1465 aa14.93□□□□□ -0.02
CUX1-204ENST00000393824 KDM4FA0A1W2PPD8 638 aa14.93□□□□□ -0.02
CUX1-204ENST00000393824 C11orf95C9JLR9 678 aaPredicted RBP14.93□□□□□ -0.02
CUX1-204ENST00000393824 CCDC184Q52MB2 194 aa14.93□□□□□ -0.02
CUX1-204ENST00000393824 PIK3C2GO75747 1445 aa14.93□□□□□ -0.02
CUX1-204ENST00000393824 SLC24A1O60721 1099 aa14.92□□□□□ -0.02
CUX1-204ENST00000393824 USP47Q96K76 1375 aa14.92□□□□□ -0.02
CUX1-204ENST00000393824 PTPRMP28827 1452 aa14.92□□□□□ -0.02
CUX1-204ENST00000393824 IL27Q8NEV9 243 aa14.91□□□□□ -0.02
CUX1-204ENST00000393824 TMEM132EQ6IEE7 984 aa14.91□□□□□ -0.02
CUX1-204ENST00000393824 PRKRIP1Q9H875 184 aaPredicted RBP14.91□□□□□ -0.02
CUX1-204ENST00000393824 RNF123Q5XPI4 1314 aa14.9□□□□□ -0.02
CUX1-204ENST00000393824 RPGRIP1LQ68CZ1 1315 aa14.9□□□□□ -0.02
CUX1-204ENST00000393824 ZFYVE9O95405 1425 aa14.9□□□□□ -0.02
CUX1-204ENST00000393824 GPRASP1Q5JY77 1395 aa14.9□□□□□ -0.02
CUX1-204ENST00000393824 LTKP29376 864 aa14.89□□□□□ -0.03
CUX1-204ENST00000393824 USP35Q9P2H5 1018 aa14.89□□□□□ -0.03
CUX1-204ENST00000393824 UBR1Q8IWV7 1749 aa14.89□□□□□ -0.03
CUX1-204ENST00000393824 RIMS2Q9UQ26 1411 aa14.89□□□□□ -0.03
CUX1-204ENST00000393824 CCDC7Q96M83 1385 aa14.89□□□□□ -0.03
CUX1-204ENST00000393824 ST20-MTHFSA0A0A6YYL1 179 aa14.88□□□□□ -0.03
CUX1-204ENST00000393824 NLRP1Q9C000 1473 aa14.88□□□□□ -0.03
CUX1-204ENST00000393824 MYO3AQ8NEV4 1616 aa14.88□□□□□ -0.03
CUX1-204ENST00000393824 SMG6Q86US8 1419 aaKnown RBP14.88□□□□□ -0.03
CUX1-204ENST00000393824 TMEM2Q9UHN6 1383 aa14.87□□□□□ -0.03
CUX1-204ENST00000393824 VGFO15240 615 aaPredicted RBP14.87□□□□□ -0.03
CUX1-204ENST00000393824 C14orf93Q9H972 538 aaKnown RBP14.87□□□□□ -0.03
CUX1-204ENST00000393824 FAM9BQ8IZU0 186 aa14.87□□□□□ -0.03
CUX1-204ENST00000393824 STAC3Q96MF2 364 aa14.86□□□□□ -0.03
CUX1-204ENST00000393824 MRS2Q9HD23 443 aa14.86□□□□□ -0.03
CUX1-204ENST00000393824 ADGRB1O14514 1584 aa14.85□□□□□ -0.03
CUX1-204ENST00000393824 ASXL1Q8IXJ9 1541 aa14.84□□□□□ -0.03
CUX1-204ENST00000393824 CEP170BQ9Y4F5 1589 aaPredicted RBP14.84□□□□□ -0.03
CUX1-204ENST00000393824 TESK2Q96S53 571 aa14.82□□□□□ -0.04
CUX1-204ENST00000393824 TRAK1Q9UPV9 953 aa14.82□□□□□ -0.04
CUX1-204ENST00000393824 TXNDC2Q86VQ3 553 aa14.81□□□□□ -0.04
CUX1-204ENST00000393824 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.81□□□□□ -0.04
CUX1-204ENST00000393824 POLR1AO95602 1720 aaPredicted RBP14.81□□□□□ -0.04
CUX1-204ENST00000393824 NRXN3Q9Y4C0 1643 aa14.81□□□□□ -0.04
CUX1-204ENST00000393824 PKNOX2Q96KN3 472 aa14.81□□□□□ -0.04
CUX1-204ENST00000393824 NUDCQ9Y266 331 aa14.81□□□□□ -0.04
CUX1-204ENST00000393824 ARHGAP23Q9P227 1491 aa14.8□□□□□ -0.04
CUX1-204ENST00000393824 KDM5AP29375 1690 aaKnown RBP14.8□□□□□ -0.04
CUX1-204ENST00000393824 METP08581 1390 aa14.8□□□□□ -0.04
CUX1-204ENST00000393824 ALKQ9UM73 1620 aa14.8□□□□□ -0.04
CUX1-204ENST00000393824 KIF7Q2M1P5 1343 aa14.8□□□□□ -0.04
CUX1-204ENST00000393824 STK26Q9P289 416 aa14.8□□□□□ -0.04
CUX1-204ENST00000393824 KIAA1210Q9ULL0 1709 aa14.79□□□□□ -0.04
CUX1-204ENST00000393824 THEMISQ8N1K5 641 aaPredicted RBP14.79□□□□□ -0.04
CUX1-204ENST00000393824 SLC26A8Q96RN1 970 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms