RNA–Protein interactions for RNA: ENST00000393452.7

TDP1-202, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best) BASIC

Gene TDP1, Length 2,370 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-202ENST00000393452 ABCC3O15438 1527 aa12.31□□□□□ -0.44
TDP1-202ENST00000393452 ADGRB3O60242 1522 aa12.31□□□□□ -0.44
TDP1-202ENST00000393452 LRPPRCP42704 1394 aaKnown RBP12.31□□□□□ -0.44
TDP1-202ENST00000393452 TMC1Q8TDI8 760 aa12.3□□□□□ -0.44
TDP1-202ENST00000393452 RAPGEF3O95398 923 aa12.29□□□□□ -0.44
TDP1-202ENST00000393452 CFAP65Q6ZU64 1925 aaKnown RBP12.29□□□□□ -0.44
TDP1-202ENST00000393452 CNGB1Q14028 1251 aaPredicted RBP12.28□□□□□ -0.44
TDP1-202ENST00000393452 CAMSAP1Q5T5Y3 1602 aa12.28□□□□□ -0.44
TDP1-202ENST00000393452 NLRP13Q86W25 1043 aa12.27□□□□□ -0.44
TDP1-202ENST00000393452 BCANQ96GW7 911 aa12.27□□□□□ -0.44
TDP1-202ENST00000393452 EIF3AQ14152 1382 aaKnown RBP12.27□□□□□ -0.45
TDP1-202ENST00000393452 ADGRF5Q8IZF2 1346 aa12.27□□□□□ -0.45
TDP1-202ENST00000393452 GGT6Q6P531 493 aa12.27□□□□□ -0.45
TDP1-202ENST00000393452 PANK3Q9H999 370 aa12.27□□□□□ -0.45
TDP1-202ENST00000393452 PPLO60437 1756 aa12.27□□□□□ -0.45
TDP1-202ENST00000393452 SYNMO15061 1565 aa12.26□□□□□ -0.45
TDP1-202ENST00000393452 NOS1P29475 1434 aa12.26□□□□□ -0.45
TDP1-202ENST00000393452 SIGLEC1Q9BZZ2 1709 aa12.26□□□□□ -0.45
TDP1-202ENST00000393452 CDCA8Q53HL2 280 aa12.26□□□□□ -0.45
TDP1-202ENST00000393452 SMG6Q86US8 1419 aaKnown RBP12.25□□□□□ -0.45
TDP1-202ENST00000393452 ZC3H13Q5T200 1668 aaKnown RBP12.25□□□□□ -0.45
TDP1-202ENST00000393452 SETBP1Q9Y6X0 1596 aa12.25□□□□□ -0.45
TDP1-202ENST00000393452 PIK3C2BO00750 1634 aa12.25□□□□□ -0.45
TDP1-202ENST00000393452 ARHGAP31Q2M1Z3 1444 aa12.25□□□□□ -0.45
TDP1-202ENST00000393452 CFAP70Q5T0N1 1121 aa12.25□□□□□ -0.45
TDP1-202ENST00000393452 ERICH6BQ5W0A0 696 aa12.25□□□□□ -0.45
TDP1-202ENST00000393452 MYO3AQ8NEV4 1616 aa12.24□□□□□ -0.45
TDP1-202ENST00000393452 MYOM1P52179 1685 aa12.24□□□□□ -0.45
TDP1-202ENST00000393452 SLC24A1O60721 1099 aa12.24□□□□□ -0.45
TDP1-202ENST00000393452 ZMYM4Q5VZL5 1548 aa12.24□□□□□ -0.45
TDP1-202ENST00000393452 AEBP2Q6ZN18 517 aaPredicted RBP12.23□□□□□ -0.45
TDP1-202ENST00000393452 DIP2BQ9P265 1576 aa12.23□□□□□ -0.45
TDP1-202ENST00000393452 PIK3C2GO75747 1445 aa12.23□□□□□ -0.45
TDP1-202ENST00000393452 YEATS2Q9ULM3 1422 aa12.23□□□□□ -0.45
TDP1-202ENST00000393452 RPGRIP1LQ68CZ1 1315 aa12.23□□□□□ -0.45
TDP1-202ENST00000393452 INSRP06213 1382 aa12.23□□□□□ -0.45
TDP1-202ENST00000393452 SBNO2Q9Y2G9 1366 aa12.23□□□□□ -0.45
TDP1-202ENST00000393452 KDM5AP29375 1690 aaKnown RBP12.22□□□□□ -0.45
TDP1-202ENST00000393452 ERVK-7P63135 1459 aa12.21□□□□□ -0.45
TDP1-202ENST00000393452 TRHP20396 242 aaPredicted RBP12.21□□□□□ -0.46
TDP1-202ENST00000393452 CC2D1BQ5T0F9 858 aaKnown RBP12.2□□□□□ -0.46
TDP1-202ENST00000393452 NUDCQ9Y266 331 aa12.2□□□□□ -0.46
TDP1-202ENST00000393452 NPC1L1Q9UHC9 1359 aa12.2□□□□□ -0.46
TDP1-202ENST00000393452 ADGRB1O14514 1584 aa12.2□□□□□ -0.46
TDP1-202ENST00000393452 C14orf93Q9H972 538 aaKnown RBP12.2□□□□□ -0.46
TDP1-202ENST00000393452 AMER1Q5JTC6 1135 aaPredicted RBP12.19□□□□□ -0.46
TDP1-202ENST00000393452 TSHZ2Q9NRE2 1034 aa12.19□□□□□ -0.46
TDP1-202ENST00000393452 KNSTRNQ9Y448 316 aa12.19□□□□□ -0.46
TDP1-202ENST00000393452 ASXL1Q8IXJ9 1541 aa12.19□□□□□ -0.46
TDP1-202ENST00000393452 RNF123Q5XPI4 1314 aa12.18□□□□□ -0.46
TDP1-202ENST00000393452 MYT1Q01538 1121 aa12.18□□□□□ -0.46
TDP1-202ENST00000393452 NEXMIFQ5QGS0 1516 aa12.18□□□□□ -0.46
TDP1-202ENST00000393452 CHGAP10645 457 aaKnown RBP12.18□□□□□ -0.46
TDP1-202ENST00000393452 FAM69CQ0P6D2 419 aa12.18□□□□□ -0.46
TDP1-202ENST00000393452 REREQ9P2R6 1566 aa12.17□□□□□ -0.46
TDP1-202ENST00000393452 IRX6P78412 446 aaPredicted RBP12.17□□□□□ -0.46
TDP1-202ENST00000393452 BLMP54132 1417 aaPredicted RBP12.16□□□□□ -0.46
TDP1-202ENST00000393452 PREX1Q8TCU6 1659 aa12.16□□□□□ -0.46
TDP1-202ENST00000393452 SLC52A1Q9NWF4 448 aa12.15□□□□□ -0.46
TDP1-202ENST00000393452 TSPOAP1O95153 1857 aa12.15□□□□□ -0.46
TDP1-202ENST00000393452 ZFYVE9O95405 1425 aa12.15□□□□□ -0.46
TDP1-202ENST00000393452 CENPJQ9HC77 1338 aaPredicted RBP12.15□□□□□ -0.46
TDP1-202ENST00000393452 PPP4R2Q9NY27 417 aa12.15□□□□□ -0.46
TDP1-202ENST00000393452 AGLP35573 1532 aa12.15□□□□□ -0.47
TDP1-202ENST00000393452 QRICH2Q9H0J4 1663 aa12.14□□□□□ -0.47
TDP1-202ENST00000393452 VGFO15240 615 aaPredicted RBP12.14□□□□□ -0.47
TDP1-202ENST00000393452 PPP2R1AP30153 589 aa12.14□□□□□ -0.47
TDP1-202ENST00000393452 IDI1Q13907 227 aa12.14□□□□□ -0.47
TDP1-202ENST00000393452 MYO5BQ9ULV0 1848 aa12.13□□□□□ -0.47
TDP1-202ENST00000393452 PDE3BQ13370 1112 aa12.13□□□□□ -0.47
TDP1-202ENST00000393452 TMEM131LA2VDJ0 1609 aa12.13□□□□□ -0.47
TDP1-202ENST00000393452 PPP6R1Q9UPN7 881 aa12.12□□□□□ -0.47
TDP1-202ENST00000393452 ARHGEF28Q8N1W1 1705 aaKnown RBP12.11□□□□□ -0.47
TDP1-202ENST00000393452 TRAK1Q9UPV9 953 aa12.11□□□□□ -0.47
TDP1-202ENST00000393452 SENP3-EIF4A1A0A087X0R7 540 aa12.11□□□□□ -0.47
TDP1-202ENST00000393452 TMEM132EQ6IEE7 984 aa12.1□□□□□ -0.47
TDP1-202ENST00000393452 CARD14Q9BXL6 1004 aa12.1□□□□□ -0.47
TDP1-202ENST00000393452 KIF13AQ9H1H9 1805 aa12.09□□□□□ -0.47
TDP1-202ENST00000393452 PUS7Q96PZ0 661 aaKnown RBP12.09□□□□□ -0.47
TDP1-202ENST00000393452 ADAMTS8Q9UP79 889 aa12.08□□□□□ -0.48
TDP1-202ENST00000393452 USP32Q8NFA0 1604 aa12.06□□□□□ -0.48
TDP1-202ENST00000393452 NUTM2DQ5VT03 806 aaPredicted RBP12.06□□□□□ -0.48
TDP1-202ENST00000393452 FBXO31Q5XUX0 539 aaPredicted RBP12.06□□□□□ -0.48
TDP1-202ENST00000393452 ARHGEF40Q8TER5 1519 aa12.06□□□□□ -0.48
TDP1-202ENST00000393452 TULP4Q9NRJ4 1543 aa12.06□□□□□ -0.48
TDP1-202ENST00000393452 CLTCQ00610 1675 aaKnown RBP12.05□□□□□ -0.48
TDP1-202ENST00000393452 SPATA31D1Q6ZQQ2 1576 aa12.05□□□□□ -0.48
TDP1-202ENST00000393452 WDR43Q15061 677 aaKnown RBP eCLIP12.04□□□□□ -0.48
TDP1-202ENST00000393452 SALL2Q9Y467 1007 aaPredicted RBP12.04□□□□□ -0.48
TDP1-202ENST00000393452 EVC2Q86UK5 1308 aa12.04□□□□□ -0.48
TDP1-202ENST00000393452 CDCA7LQ96GN5 454 aa12.04□□□□□ -0.48
TDP1-202ENST00000393452 SLC12A5Q9H2X9 1139 aa12.04□□□□□ -0.48
TDP1-202ENST00000393452 RCAN3Q9UKA8 241 aa12.04□□□□□ -0.48
TDP1-202ENST00000393452 NSD3Q9BZ95 1437 aa12.03□□□□□ -0.48
TDP1-202ENST00000393452 B4GALNT3Q6L9W6 998 aa12.03□□□□□ -0.48
TDP1-202ENST00000393452 PTPRMP28827 1452 aa12.02□□□□□ -0.48
TDP1-202ENST00000393452 ZNF521Q96K83 1311 aa12.02□□□□□ -0.49
TDP1-202ENST00000393452 RRP1P56182 461 aaKnown RBP12.02□□□□□ -0.49
TDP1-202ENST00000393452 POLR3AO14802 1390 aaPredicted RBP12.02□□□□□ -0.49
TDP1-202ENST00000393452 ALKQ9UM73 1620 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms