RNA–Protein interactions for RNA: ENST00000377011.6

VRK3-202, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,749 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-202ENST00000377011 SETD5Q9C0A6 1442 aa18.2■□□□□ 0.5
VRK3-202ENST00000377011 ZFYVE9O95405 1425 aa18.19■□□□□ 0.5
VRK3-202ENST00000377011 SLC4A1APQ9BWU0 796 aaKnown RBP18.19■□□□□ 0.5
VRK3-202ENST00000377011 RAB3GAP2Q9H2M9 1393 aa18.19■□□□□ 0.5
VRK3-202ENST00000377011 TRPM2O94759 1503 aa18.16■□□□□ 0.5
VRK3-202ENST00000377011 RIMS2Q9UQ26 1411 aa18.16■□□□□ 0.5
VRK3-202ENST00000377011 MPHOSPH9Q99550 1183 aa18.15■□□□□ 0.5
VRK3-202ENST00000377011 PHF23Q9BUL5 403 aaPredicted RBP18.15■□□□□ 0.5
VRK3-202ENST00000377011 FBXO41Q8TF61 875 aa18.15■□□□□ 0.5
VRK3-202ENST00000377011 SLC26A8Q96RN1 970 aa18.15■□□□□ 0.5
VRK3-202ENST00000377011 EID1Q9Y6B2 187 aa18.13■□□□□ 0.49
VRK3-202ENST00000377011 PELP1Q8IZL8 1130 aaKnown RBP18.12■□□□□ 0.49
VRK3-202ENST00000377011 RBM33Q96EV2 1170 aaKnown RBP18.07■□□□□ 0.48
VRK3-202ENST00000377011 KIF1BO60333 1816 aa18.07■□□□□ 0.48
VRK3-202ENST00000377011 ADAMTS13Q76LX8 1427 aa18.07■□□□□ 0.48
VRK3-202ENST00000377011 PLEKHG1Q9ULL1 1385 aa18.07■□□□□ 0.48
VRK3-202ENST00000377011 NEXMIFQ5QGS0 1516 aa18.06■□□□□ 0.48
VRK3-202ENST00000377011 LRRC7Q96NW7 1537 aa18.06■□□□□ 0.48
VRK3-202ENST00000377011 XIRP1Q702N8 1843 aaKnown RBP18.06■□□□□ 0.48
VRK3-202ENST00000377011 NRXN3Q9Y4C0 1643 aa18.06■□□□□ 0.48
VRK3-202ENST00000377011 PPP1R15AO75807 674 aaPredicted RBP18.05■□□□□ 0.48
VRK3-202ENST00000377011 ZNF326Q5BKZ1 582 aaKnown RBP18.05■□□□□ 0.48
VRK3-202ENST00000377011 BCANQ96GW7 911 aa18.05■□□□□ 0.48
VRK3-202ENST00000377011 ALKQ9UM73 1620 aa18.05■□□□□ 0.48
VRK3-202ENST00000377011 CPS1P31327 1500 aa18.04■□□□□ 0.48
VRK3-202ENST00000377011 IQSEC2Q5JU85 1478 aa18.01■□□□□ 0.47
VRK3-202ENST00000377011 PTPRUQ92729 1446 aa18■□□□□ 0.47
VRK3-202ENST00000377011 CHD2O14647 1828 aaKnown RBP18■□□□□ 0.47
VRK3-202ENST00000377011 SPATA31E1Q6ZUB1 1445 aa17.99■□□□□ 0.47
VRK3-202ENST00000377011 UBAP1LF5GYI3 381 aa17.99■□□□□ 0.47
VRK3-202ENST00000377011 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.99■□□□□ 0.47
VRK3-202ENST00000377011 NWD1Q149M9 1564 aa17.99■□□□□ 0.47
VRK3-202ENST00000377011 KCNA6P17658 529 aa17.98■□□□□ 0.47
VRK3-202ENST00000377011 RGL3Q3MIN7 710 aa17.98■□□□□ 0.47
VRK3-202ENST00000377011 PPLO60437 1756 aa17.98■□□□□ 0.47
VRK3-202ENST00000377011 CCDC144AA2RUR9 1427 aa17.98■□□□□ 0.47
VRK3-202ENST00000377011 DIEXFQ68CQ4 756 aaKnown RBP17.98■□□□□ 0.47
VRK3-202ENST00000377011 TBX22Q9Y458 520 aa17.97■□□□□ 0.47
VRK3-202ENST00000377011 SETBP1Q9Y6X0 1596 aa17.97■□□□□ 0.47
VRK3-202ENST00000377011 METP08581 1390 aa17.96■□□□□ 0.47
VRK3-202ENST00000377011 CLSPNQ9HAW4 1339 aa17.96■□□□□ 0.47
VRK3-202ENST00000377011 TMEM94Q12767 1356 aa17.96■□□□□ 0.47
VRK3-202ENST00000377011 ANKRD30BQ9BXX2 1392 aa17.96■□□□□ 0.47
VRK3-202ENST00000377011 HDGFP51858 240 aaKnown RBP17.95■□□□□ 0.46
VRK3-202ENST00000377011 SETD1AO15047 1707 aaKnown RBP17.95■□□□□ 0.46
VRK3-202ENST00000377011 ADGRF5Q8IZF2 1346 aa17.94■□□□□ 0.46
VRK3-202ENST00000377011 IFT172Q9UG01 1749 aa17.94■□□□□ 0.46
VRK3-202ENST00000377011 ZNF316A6NFI3 1004 aaPredicted RBP17.93■□□□□ 0.46
VRK3-202ENST00000377011 SCAF1Q9H7N4 1312 aaKnown RBP17.93■□□□□ 0.46
VRK3-202ENST00000377011 PIP4K2BP78356 416 aa17.92■□□□□ 0.46
VRK3-202ENST00000377011 PROSER2Q86WR7 435 aaPredicted RBP17.92■□□□□ 0.46
VRK3-202ENST00000377011 DIP2AQ14689 1571 aa17.91■□□□□ 0.46
VRK3-202ENST00000377011 AMOTL2Q9Y2J4 779 aa17.9■□□□□ 0.46
VRK3-202ENST00000377011 NKTRP30414 1462 aaKnown RBP17.9■□□□□ 0.46
VRK3-202ENST00000377011 XRN1Q8IZH2 1706 aaKnown RBP17.89■□□□□ 0.45
VRK3-202ENST00000377011 RPGRIP1LQ68CZ1 1315 aa17.87■□□□□ 0.45
VRK3-202ENST00000377011 VGFO15240 615 aaPredicted RBP17.86■□□□□ 0.45
VRK3-202ENST00000377011 ACIN1Q9UKV3 1341 aaKnown RBP17.86■□□□□ 0.45
VRK3-202ENST00000377011 PIK3R4Q99570 1358 aa17.85■□□□□ 0.45
VRK3-202ENST00000377011 ASXL1Q8IXJ9 1541 aa17.85■□□□□ 0.45
VRK3-202ENST00000377011 TOM1O60784 492 aa17.85■□□□□ 0.45
VRK3-202ENST00000377011 CENPBP07199 599 aaPredicted RBP17.84■□□□□ 0.45
VRK3-202ENST00000377011 HSPA1LP34931 641 aa17.84■□□□□ 0.45
VRK3-202ENST00000377011 PIK3C2GO75747 1445 aa17.82■□□□□ 0.44
VRK3-202ENST00000377011 TMEM132EQ6IEE7 984 aa17.82■□□□□ 0.44
VRK3-202ENST00000377011 DHX57Q6P158 1386 aaKnown RBP17.82■□□□□ 0.44
VRK3-202ENST00000377011 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.81■□□□□ 0.44
VRK3-202ENST00000377011 ROBO2Q9HCK4 1378 aa17.81■□□□□ 0.44
VRK3-202ENST00000377011 NRXN1Q9ULB1 1477 aa17.8■□□□□ 0.44
VRK3-202ENST00000377011 CFAP70Q5T0N1 1121 aa17.79■□□□□ 0.44
VRK3-202ENST00000377011 SIN3AQ96ST3 1273 aa17.79■□□□□ 0.44
VRK3-202ENST00000377011 KDM2AQ9Y2K7 1162 aa17.78■□□□□ 0.44
VRK3-202ENST00000377011 NALCNQ8IZF0 1738 aa17.78■□□□□ 0.44
VRK3-202ENST00000377011 MYOM2P54296 1465 aa17.77■□□□□ 0.44
VRK3-202ENST00000377011 MSH6P52701 1360 aa17.77■□□□□ 0.44
VRK3-202ENST00000377011 ROBO1Q9Y6N7 1651 aa17.76■□□□□ 0.43
VRK3-202ENST00000377011 DCAF11Q8TEB1 546 aa17.76■□□□□ 0.43
VRK3-202ENST00000377011 STK26Q9P289 416 aa17.76■□□□□ 0.43
VRK3-202ENST00000377011 C14orf37Q86TY3 774 aa17.75■□□□□ 0.43
VRK3-202ENST00000377011 C14orf93Q9H972 538 aaKnown RBP17.75■□□□□ 0.43
VRK3-202ENST00000377011 PLEKHH1Q9ULM0 1364 aa17.74■□□□□ 0.43
VRK3-202ENST00000377011 WAPLQ7Z5K2 1190 aa17.74■□□□□ 0.43
VRK3-202ENST00000377011 SLAIN2Q9P270 581 aa17.73■□□□□ 0.43
VRK3-202ENST00000377011 C19orf44Q9H6X5 657 aa17.72■□□□□ 0.43
VRK3-202ENST00000377011 PTCH1Q13635 1447 aa17.72■□□□□ 0.43
VRK3-202ENST00000377011 NCOA3Q9Y6Q9 1424 aa17.72■□□□□ 0.43
VRK3-202ENST00000377011 FAM135BQ49AJ0 1406 aa17.71■□□□□ 0.43
VRK3-202ENST00000377011 PRAG1Q86YV5 1406 aa17.71■□□□□ 0.43
VRK3-202ENST00000377011 ADGRB1O14514 1584 aa17.71■□□□□ 0.42
VRK3-202ENST00000377011 YTHDC2Q9H6S0 1430 aaKnown RBP17.7■□□□□ 0.42
VRK3-202ENST00000377011 ADGRL3Q9HAR2 1447 aa17.7■□□□□ 0.42
VRK3-202ENST00000377011 LRPPRCP42704 1394 aaKnown RBP17.7■□□□□ 0.42
VRK3-202ENST00000377011 NEUROD1Q13562 356 aa17.7■□□□□ 0.42
VRK3-202ENST00000377011 MST1RQ04912 1400 aa17.69■□□□□ 0.42
VRK3-202ENST00000377011 KNDC1Q76NI1 1749 aa17.68■□□□□ 0.42
VRK3-202ENST00000377011 TECPR2O15040 1411 aa17.68■□□□□ 0.42
VRK3-202ENST00000377011 ABCC11Q96J66 1382 aa17.67■□□□□ 0.42
VRK3-202ENST00000377011 ATF3P18847 181 aa17.67■□□□□ 0.42
VRK3-202ENST00000377011 DDX17Q92841 729 aaKnown RBP17.67■□□□□ 0.42
VRK3-202ENST00000377011 CADPS2Q86UW7 1296 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms