RNA–Protein interactions for RNA: ENST00000375290.6

PTCH1-204, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 10,631 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-204ENST00000375290 DCTN1Q14203 1278 aa12.4□□□□□ -0.42
PTCH1-204ENST00000375290 KIF2AO00139 706 aaPredicted RBP12.4□□□□□ -0.42
PTCH1-204ENST00000375290 CADPSQ9ULU8 1353 aa12.4□□□□□ -0.42
PTCH1-204ENST00000375290 RABEP1Q15276 862 aa12.4□□□□□ -0.42
PTCH1-204ENST00000375290 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.4□□□□□ -0.43
PTCH1-204ENST00000375290 POLA1P09884 1462 aaPredicted RBP12.39□□□□□ -0.43
PTCH1-204ENST00000375290 DZIP1LQ8IYY4 767 aaKnown RBP12.39□□□□□ -0.43
PTCH1-204ENST00000375290 PKNOX2Q96KN3 472 aa12.39□□□□□ -0.43
PTCH1-204ENST00000375290 SPRYD3Q8NCJ5 442 aa12.38□□□□□ -0.43
PTCH1-204ENST00000375290 C22orf23Q9BZE7 217 aa12.38□□□□□ -0.43
PTCH1-204ENST00000375290 EVC2Q86UK5 1308 aa12.38□□□□□ -0.43
PTCH1-204ENST00000375290 TRIM6-TRIM34B2RNG4 842 aa12.38□□□□□ -0.43
PTCH1-204ENST00000375290 TXLNBQ8N3L3 684 aa12.38□□□□□ -0.43
PTCH1-204ENST00000375290 ERCC6Q03468 1493 aa12.38□□□□□ -0.43
PTCH1-204ENST00000375290 H3BQV1 296 aa12.37□□□□□ -0.43
PTCH1-204ENST00000375290 IFFO2Q5TF58 517 aa12.37□□□□□ -0.43
PTCH1-204ENST00000375290 AKNAQ7Z591 1439 aa12.37□□□□□ -0.43
PTCH1-204ENST00000375290 NAP1L2Q9ULW6 460 aaPredicted RBP12.37□□□□□ -0.43
PTCH1-204ENST00000375290 TIAM1Q13009 1591 aa12.37□□□□□ -0.43
PTCH1-204ENST00000375290 SF3A1Q15459 793 aaKnown RBP12.36□□□□□ -0.43
PTCH1-204ENST00000375290 PIP4K2AP48426 406 aaPredicted RBP12.36□□□□□ -0.43
PTCH1-204ENST00000375290 GCC1Q96CN9 775 aa12.36□□□□□ -0.43
PTCH1-204ENST00000375290 FAM13BQ9NYF5 915 aa12.36□□□□□ -0.43
PTCH1-204ENST00000375290 MYO6Q9UM54 1294 aa12.36□□□□□ -0.43
PTCH1-204ENST00000375290 RUNDC1Q96C34 613 aa12.36□□□□□ -0.43
PTCH1-204ENST00000375290 ATAD2BQ9ULI0 1458 aa12.36□□□□□ -0.43
PTCH1-204ENST00000375290 BACH2Q9BYV9 841 aa12.35□□□□□ -0.43
PTCH1-204ENST00000375290 HECW1Q76N89 1606 aa12.35□□□□□ -0.43
PTCH1-204ENST00000375290 SASS6Q6UVJ0 657 aa12.35□□□□□ -0.43
PTCH1-204ENST00000375290 CDC45O75419 566 aa12.35□□□□□ -0.43
PTCH1-204ENST00000375290 FHOD3Q2V2M9 1422 aa12.35□□□□□ -0.43
PTCH1-204ENST00000375290 PLEKHH1Q9ULM0 1364 aa12.35□□□□□ -0.43
PTCH1-204ENST00000375290 HSP90B1P14625 803 aaKnown RBP12.35□□□□□ -0.43
PTCH1-204ENST00000375290 HIP1O00291 1037 aa12.35□□□□□ -0.43
PTCH1-204ENST00000375290 CCDC47Q96A33 483 aaKnown RBP12.35□□□□□ -0.43
PTCH1-204ENST00000375290 TRAK2O60296 914 aa12.34□□□□□ -0.43
PTCH1-204ENST00000375290 TOP2BQ02880 1626 aa12.34□□□□□ -0.43
PTCH1-204ENST00000375290 CEP89Q96ST8 783 aa12.34□□□□□ -0.43
PTCH1-204ENST00000375290 PSMA5P28066 241 aa12.34□□□□□ -0.43
PTCH1-204ENST00000375290 ST20-MTHFSA0A0A6YYL1 179 aa12.34□□□□□ -0.43
PTCH1-204ENST00000375290 ERC2O15083 957 aa12.34□□□□□ -0.43
PTCH1-204ENST00000375290 EXOC6Q8TAG9 804 aa12.33□□□□□ -0.43
PTCH1-204ENST00000375290 KCNH8Q96L42 1107 aa12.33□□□□□ -0.44
PTCH1-204ENST00000375290 CRBNQ96SW2 442 aa12.33□□□□□ -0.44
PTCH1-204ENST00000375290 RUFY1Q96T51 708 aa12.33□□□□□ -0.44
PTCH1-204ENST00000375290 GNAI1P63096 354 aa12.33□□□□□ -0.44
PTCH1-204ENST00000375290 PDCL3Q9H2J4 239 aa12.33□□□□□ -0.44
PTCH1-204ENST00000375290 C14orf37Q86TY3 774 aa12.32□□□□□ -0.44
PTCH1-204ENST00000375290 MNS1Q8NEH6 495 aa12.32□□□□□ -0.44
PTCH1-204ENST00000375290 VGFO15240 615 aaPredicted RBP12.31□□□□□ -0.44
PTCH1-204ENST00000375290 CAVIN2O95810 425 aa12.31□□□□□ -0.44
PTCH1-204ENST00000375290 AQRO60306 1485 aaKnown RBP eCLIP12.31□□□□□ -0.443e-7■■■□□ 17
PTCH1-204ENST00000375290 LEKR1Q6ZMV7 388 aa12.31□□□□□ -0.44
PTCH1-204ENST00000375290 CCDC73Q6ZRK6 1079 aa12.31□□□□□ -0.44
PTCH1-204ENST00000375290 CAGE1Q8TC20 777 aa12.31□□□□□ -0.44
PTCH1-204ENST00000375290 EIF3JO75822 258 aaKnown RBP12.3□□□□□ -0.44
PTCH1-204ENST00000375290 ANKRD45Q5TZF3 282 aa12.3□□□□□ -0.44
PTCH1-204ENST00000375290 ZSCAN30Q86W11 494 aa12.3□□□□□ -0.44
PTCH1-204ENST00000375290 FAM107BQ9H098 131 aa12.3□□□□□ -0.44
PTCH1-204ENST00000375290 IQCEQ6IPM2 695 aa12.3□□□□□ -0.44
PTCH1-204ENST00000375290 PANK3Q9H999 370 aa12.3□□□□□ -0.44
PTCH1-204ENST00000375290 HOMER1Q86YM7 354 aa12.3□□□□□ -0.44
PTCH1-204ENST00000375290 DAPK1P53355 1430 aa12.29□□□□□ -0.44
PTCH1-204ENST00000375290 ERLIN1O75477 346 aa12.29□□□□□ -0.44
PTCH1-204ENST00000375290 NCOA2Q15596 1464 aa12.29□□□□□ -0.44
PTCH1-204ENST00000375290 TPD52L1Q16890 204 aaPredicted RBP12.29□□□□□ -0.44
PTCH1-204ENST00000375290 AEBP1Q8IUX7 1158 aa12.29□□□□□ -0.44
PTCH1-204ENST00000375290 RDXP35241 583 aaKnown RBP12.29□□□□□ -0.44
PTCH1-204ENST00000375290 ANKRD1Q15327 319 aa12.29□□□□□ -0.44
PTCH1-204ENST00000375290 ESPNB1AK53 854 aa12.28□□□□□ -0.44
PTCH1-204ENST00000375290 CCDC191Q8NCU4 936 aa12.28□□□□□ -0.44
PTCH1-204ENST00000375290 TRIM29Q14134 588 aa12.28□□□□□ -0.44
PTCH1-204ENST00000375290 IFT57Q9NWB7 429 aa12.28□□□□□ -0.44
PTCH1-204ENST00000375290 SMC3Q9UQE7 1217 aa12.28□□□□□ -0.44
PTCH1-204ENST00000375290 TSPY26PQ9H489 355 aa12.28□□□□□ -0.44
PTCH1-204ENST00000375290 CCDC192P0DO97 292 aa12.28□□□□□ -0.44
PTCH1-204ENST00000375290 GOLGA6L7A0A1B0GV03 622 aa12.27□□□□□ -0.45
PTCH1-204ENST00000375290 SYNE3Q6ZMZ3 975 aa12.27□□□□□ -0.45
PTCH1-204ENST00000375290 GRPEL1Q9HAV7 217 aa12.27□□□□□ -0.45
PTCH1-204ENST00000375290 DHX16O60231 1041 aaKnown RBP12.27□□□□□ -0.45
PTCH1-204ENST00000375290 TUBB4AP04350 444 aa12.27□□□□□ -0.45
PTCH1-204ENST00000375290 FGD5Q6ZNL6 1462 aa12.26□□□□□ -0.45
PTCH1-204ENST00000375290 WDR33Q9C0J8 1336 aaKnown RBP12.26□□□□□ -0.45
PTCH1-204ENST00000375290 MCM3P25205 808 aa12.26□□□□□ -0.45
PTCH1-204ENST00000375290 CUL7Q14999 1698 aa12.26□□□□□ -0.45
PTCH1-204ENST00000375290 GORABQ5T7V8 394 aa12.26□□□□□ -0.45
PTCH1-204ENST00000375290 SRCIN1Q9C0H9 1055 aa12.26□□□□□ -0.45
PTCH1-204ENST00000375290 ANKRD50Q9ULJ7 1429 aa12.26□□□□□ -0.45
PTCH1-204ENST00000375290 NEXNQ0ZGT2 675 aa12.26□□□□□ -0.45
PTCH1-204ENST00000375290 PLPPR3Q6T4P5 718 aa12.26□□□□□ -0.45
PTCH1-204ENST00000375290 JMYQ8N9B5 988 aa12.25□□□□□ -0.45
PTCH1-204ENST00000375290 CCDC141Q6ZP82 1450 aa12.25□□□□□ -0.45
PTCH1-204ENST00000375290 LUC7LQ9NQ29 371 aaKnown RBP12.25□□□□□ -0.45
PTCH1-204ENST00000375290 WDR63Q8IWG1 891 aa12.25□□□□□ -0.45
PTCH1-204ENST00000375290 UBE2Q2Q8WVN8 375 aa12.25□□□□□ -0.45
PTCH1-204ENST00000375290 TPRNQ4KMQ1 711 aa12.25□□□□□ -0.45
PTCH1-204ENST00000375290 SMARCE1Q969G3 411 aa12.25□□□□□ -0.45
PTCH1-204ENST00000375290 NEMFO60524 1076 aa12.25□□□□□ -0.45
PTCH1-204ENST00000375290 HS1BP3Q53T59 392 aa12.25□□□□□ -0.45
PTCH1-204ENST00000375290 DACH1Q9UI36 760 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms