RNA–Protein interactions for RNA: ENST00000371419.6

PFDN4-201, Transcript of prefoldin subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PFDN4, Length 1,462 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PFDN4-201ENST00000371419 RIMS2Q9UQ26 1411 aa23.3■■□□□ 1.32
PFDN4-201ENST00000371419 ZFYVE9O95405 1425 aa23.29■■□□□ 1.32
PFDN4-201ENST00000371419 NEURL4Q96JN8 1562 aa23.28■■□□□ 1.32
PFDN4-201ENST00000371419 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.28■■□□□ 1.32
PFDN4-201ENST00000371419 MED14O60244 1454 aa23.28■■□□□ 1.32
PFDN4-201ENST00000371419 NPHP4O75161 1426 aaPredicted RBP23.26■■□□□ 1.31
PFDN4-201ENST00000371419 SPATA31E1Q6ZUB1 1445 aa23.26■■□□□ 1.31
PFDN4-201ENST00000371419 PPP1R15AO75807 674 aaPredicted RBP23.25■■□□□ 1.31
PFDN4-201ENST00000371419 PHF23Q9BUL5 403 aaPredicted RBP23.25■■□□□ 1.31
PFDN4-201ENST00000371419 RPGRIP1LQ68CZ1 1315 aa23.23■■□□□ 1.31
PFDN4-201ENST00000371419 RGL3Q3MIN7 710 aa23.22■■□□□ 1.31
PFDN4-201ENST00000371419 NUTM2DQ5VT03 806 aaPredicted RBP23.22■■□□□ 1.31
PFDN4-201ENST00000371419 IQGAP1P46940 1657 aa23.21■■□□□ 1.31
PFDN4-201ENST00000371419 NEXMIFQ5QGS0 1516 aa23.21■■□□□ 1.31
PFDN4-201ENST00000371419 PLEKHG1Q9ULL1 1385 aa23.2■■□□□ 1.3
PFDN4-201ENST00000371419 BCANQ96GW7 911 aa23.17■■□□□ 1.3
PFDN4-201ENST00000371419 VGFO15240 615 aaPredicted RBP23.17■■□□□ 1.3
PFDN4-201ENST00000371419 PPLO60437 1756 aa23.15■■□□□ 1.3
PFDN4-201ENST00000371419 SENP3Q9H4L4 574 aaPredicted RBP23.13■■□□□ 1.29
PFDN4-201ENST00000371419 SLC26A8Q96RN1 970 aa23.12■■□□□ 1.29
PFDN4-201ENST00000371419 SIN3AQ96ST3 1273 aa23.12■■□□□ 1.29
PFDN4-201ENST00000371419 IFT172Q9UG01 1749 aa23.11■■□□□ 1.29
PFDN4-201ENST00000371419 NEUROD1Q13562 356 aa23.09■■□□□ 1.29
PFDN4-201ENST00000371419 SETBP1Q9Y6X0 1596 aa23.09■■□□□ 1.29
PFDN4-201ENST00000371419 TBX22Q9Y458 520 aa23.08■■□□□ 1.29
PFDN4-201ENST00000371419 ADAMTS13Q76LX8 1427 aa23.08■■□□□ 1.29
PFDN4-201ENST00000371419 ADGRF5Q8IZF2 1346 aa23.07■■□□□ 1.28
PFDN4-201ENST00000371419 ZNF335Q9H4Z2 1342 aaPredicted RBP23.07■■□□□ 1.28
PFDN4-201ENST00000371419 DIP2AQ14689 1571 aa23.06■■□□□ 1.28
PFDN4-201ENST00000371419 DCAF11Q8TEB1 546 aa23.06■■□□□ 1.28
PFDN4-201ENST00000371419 MYOM2P54296 1465 aa23.06■■□□□ 1.28
PFDN4-201ENST00000371419 STAC3Q96MF2 364 aa23.05■■□□□ 1.28
PFDN4-201ENST00000371419 NRXN3Q9Y4C0 1643 aa23.05■■□□□ 1.28
PFDN4-201ENST00000371419 CLSPNQ9HAW4 1339 aa23.03■■□□□ 1.28
PFDN4-201ENST00000371419 KDM2AQ9Y2K7 1162 aa23.03■■□□□ 1.28
PFDN4-201ENST00000371419 CCER1Q8TC90 406 aaPredicted RBP23.02■■□□□ 1.28
PFDN4-201ENST00000371419 NRXN1Q9ULB1 1477 aa23.01■■□□□ 1.27
PFDN4-201ENST00000371419 LTBP4Q8N2S1 1624 aa23.01■■□□□ 1.27
PFDN4-201ENST00000371419 PIK3C2GO75747 1445 aa23.01■■□□□ 1.27
PFDN4-201ENST00000371419 PIK3R4Q99570 1358 aa23■■□□□ 1.27
PFDN4-201ENST00000371419 KCNA6P17658 529 aa22.99■■□□□ 1.27
PFDN4-201ENST00000371419 L3MBTL2Q969R5 705 aa22.99■■□□□ 1.27
PFDN4-201ENST00000371419 ALKQ9UM73 1620 aa22.99■■□□□ 1.27
PFDN4-201ENST00000371419 CPS1P31327 1500 aa22.97■■□□□ 1.27
PFDN4-201ENST00000371419 METP08581 1390 aa22.96■■□□□ 1.27
PFDN4-201ENST00000371419 STRCP1A6NGW2 1772 aa22.96■■□□□ 1.27
PFDN4-201ENST00000371419 CHD2O14647 1828 aaKnown RBP22.95■■□□□ 1.27
PFDN4-201ENST00000371419 TONSLQ96HA7 1378 aa22.95■■□□□ 1.26
PFDN4-201ENST00000371419 NWD1Q149M9 1564 aa22.95■■□□□ 1.26
PFDN4-201ENST00000371419 SETD1AO15047 1707 aaKnown RBP22.94■■□□□ 1.26
PFDN4-201ENST00000371419 ZEB1P37275 1124 aaPredicted RBP22.94■■□□□ 1.26
PFDN4-201ENST00000371419 C14orf93Q9H972 538 aaKnown RBP22.94■■□□□ 1.26
PFDN4-201ENST00000371419 CFAP70Q5T0N1 1121 aa22.92■■□□□ 1.26
PFDN4-201ENST00000371419 CERKQ8TCT0 537 aa22.92■■□□□ 1.26
PFDN4-201ENST00000371419 PTPRUQ92729 1446 aa22.92■■□□□ 1.26
PFDN4-201ENST00000371419 AMOTL2Q9Y2J4 779 aa22.92■■□□□ 1.26
PFDN4-201ENST00000371419 LAMC1P11047 1609 aa22.91■■□□□ 1.26
PFDN4-201ENST00000371419 NKTRP30414 1462 aaKnown RBP22.91■■□□□ 1.26
PFDN4-201ENST00000371419 PRAG1Q86YV5 1406 aa22.89■■□□□ 1.26
PFDN4-201ENST00000371419 LRRC7Q96NW7 1537 aa22.89■■□□□ 1.25
PFDN4-201ENST00000371419 PROSER2Q86WR7 435 aaPredicted RBP22.88■■□□□ 1.25
PFDN4-201ENST00000371419 XRN1Q8IZH2 1706 aaKnown RBP22.87■■□□□ 1.25
PFDN4-201ENST00000371419 TMEM132EQ6IEE7 984 aa22.87■■□□□ 1.25
PFDN4-201ENST00000371419 ASXL1Q8IXJ9 1541 aa22.87■■□□□ 1.25
PFDN4-201ENST00000371419 IQSEC2Q5JU85 1478 aa22.85■■□□□ 1.25
PFDN4-201ENST00000371419 TIMELESSQ9UNS1 1208 aa22.85■■□□□ 1.25
PFDN4-201ENST00000371419 LRPPRCP42704 1394 aaKnown RBP22.84■■□□□ 1.25
PFDN4-201ENST00000371419 TMEM94Q12767 1356 aa22.84■■□□□ 1.25
PFDN4-201ENST00000371419 YTHDC2Q9H6S0 1430 aaKnown RBP22.82■■□□□ 1.24
PFDN4-201ENST00000371419 KIAA1210Q9ULL0 1709 aa22.82■■□□□ 1.24
PFDN4-201ENST00000371419 STK26Q9P289 416 aa22.82■■□□□ 1.24
PFDN4-201ENST00000371419 ADGRB1O14514 1584 aa22.81■■□□□ 1.24
PFDN4-201ENST00000371419 ABCC11Q96J66 1382 aa22.81■■□□□ 1.24
PFDN4-201ENST00000371419 PTCH1Q13635 1447 aa22.81■■□□□ 1.24
PFDN4-201ENST00000371419 RBM33Q96EV2 1170 aaKnown RBP22.8■■□□□ 1.24
PFDN4-201ENST00000371419 TECPR2O15040 1411 aa22.8■■□□□ 1.24
PFDN4-201ENST00000371419 ROBO2Q9HCK4 1378 aa22.79■■□□□ 1.24
PFDN4-201ENST00000371419 NCOA3Q9Y6Q9 1424 aa22.78■■□□□ 1.24
PFDN4-201ENST00000371419 XIRP1Q702N8 1843 aaKnown RBP22.78■■□□□ 1.24
PFDN4-201ENST00000371419 NBPF8Q3BBV2 869 aa22.78■■□□□ 1.24
PFDN4-201ENST00000371419 KNDC1Q76NI1 1749 aa22.77■■□□□ 1.24
PFDN4-201ENST00000371419 NBPF1Q3BBV0 1214 aa22.77■■□□□ 1.24
PFDN4-201ENST00000371419 C14orf37Q86TY3 774 aa22.75■■□□□ 1.23
PFDN4-201ENST00000371419 TRPM1Q7Z4N2 1603 aa22.75■■□□□ 1.23
PFDN4-201ENST00000371419 SIRT1Q96EB6 747 aa22.74■■□□□ 1.23
PFDN4-201ENST00000371419 MSH6P52701 1360 aa22.73■■□□□ 1.23
PFDN4-201ENST00000371419 TRAK1Q9UPV9 953 aa22.73■■□□□ 1.23
PFDN4-201ENST00000371419 FAM135BQ49AJ0 1406 aa22.72■■□□□ 1.23
PFDN4-201ENST00000371419 DLC1Q96QB1 1528 aa22.72■■□□□ 1.23
PFDN4-201ENST00000371419 WAPLQ7Z5K2 1190 aa22.72■■□□□ 1.23
PFDN4-201ENST00000371419 ROCK2O75116 1388 aaKnown RBP22.72■■□□□ 1.23
PFDN4-201ENST00000371419 C19orf44Q9H6X5 657 aa22.71■■□□□ 1.23
PFDN4-201ENST00000371419 UBAP1LF5GYI3 381 aa22.7■■□□□ 1.22
PFDN4-201ENST00000371419 RALGAPBQ86X10 1494 aa22.69■■□□□ 1.22
PFDN4-201ENST00000371419 TOM1O60784 492 aa22.69■■□□□ 1.22
PFDN4-201ENST00000371419 PRAM1Q96QH2 718 aa22.69■■□□□ 1.22
PFDN4-201ENST00000371419 ADGRL3Q9HAR2 1447 aa22.68■■□□□ 1.22
PFDN4-201ENST00000371419 PLEKHH1Q9ULM0 1364 aa22.68■■□□□ 1.22
PFDN4-201ENST00000371419 POGKQ9P215 609 aa22.68■■□□□ 1.22
PFDN4-201ENST00000371419 GPRASP1Q5JY77 1395 aa22.67■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms