RNA–Protein interactions for RNA: ENST00000360642.7

CLCN3-202, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 2 BASIC

Gene CLCN3, Length 3,208 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-202ENST00000360642 PELP1Q8IZL8 1130 aaKnown RBP10.45□□□□□ -0.74
CLCN3-202ENST00000360642 TRAK2O60296 914 aa10.45□□□□□ -0.74
CLCN3-202ENST00000360642 AMHR2Q16671 573 aa10.45□□□□□ -0.74
CLCN3-202ENST00000360642 SUPT6HQ7KZ85 1726 aaKnown RBP10.44□□□□□ -0.74
CLCN3-202ENST00000360642 HFM1A2PYH4 1435 aa10.44□□□□□ -0.74
CLCN3-202ENST00000360642 SIN3AQ96ST3 1273 aa10.44□□□□□ -0.74
CLCN3-202ENST00000360642 MAGI3Q5TCQ9 1506 aa10.44□□□□□ -0.74
CLCN3-202ENST00000360642 UGGT2Q9NYU1 1516 aa10.44□□□□□ -0.74
CLCN3-202ENST00000360642 IQGAP2Q13576 1575 aa10.43□□□□□ -0.74
CLCN3-202ENST00000360642 CCDC18Q5T9S5 1454 aa10.43□□□□□ -0.74
CLCN3-202ENST00000360642 FOXK1P85037 733 aa10.43□□□□□ -0.74
CLCN3-202ENST00000360642 TMEM92Q6UXU6 159 aa10.43□□□□□ -0.74
CLCN3-202ENST00000360642 CARNS1A5YM72 827 aa10.42□□□□□ -0.74
CLCN3-202ENST00000360642 BMP2KQ9NSY1 1161 aaPredicted RBP10.42□□□□□ -0.74
CLCN3-202ENST00000360642 PTPN23Q9H3S7 1636 aa10.42□□□□□ -0.74
CLCN3-202ENST00000360642 HECW1Q76N89 1606 aa10.41□□□□□ -0.74
CLCN3-202ENST00000360642 GALR2O43603 387 aaPredicted RBP10.41□□□□□ -0.74
CLCN3-202ENST00000360642 RBM33Q96EV2 1170 aaKnown RBP10.41□□□□□ -0.74
CLCN3-202ENST00000360642 WDR62O43379 1518 aa10.41□□□□□ -0.74
CLCN3-202ENST00000360642 IFT140Q96RY7 1462 aa10.4□□□□□ -0.74
CLCN3-202ENST00000360642 PDCD7Q8N8D1 485 aaKnown RBP10.4□□□□□ -0.74
CLCN3-202ENST00000360642 NAIPQ13075 1403 aa10.4□□□□□ -0.74
CLCN3-202ENST00000360642 UACAQ9BZF9 1416 aa10.4□□□□□ -0.74
CLCN3-202ENST00000360642 TCOF1Q13428 1488 aaKnown RBP10.4□□□□□ -0.74
CLCN3-202ENST00000360642 CHRDL2Q6WN34 429 aa10.4□□□□□ -0.74
CLCN3-202ENST00000360642 EPRSP07814 1512 aaKnown RBP10.39□□□□□ -0.75
CLCN3-202ENST00000360642 PTGDRQ13258 359 aa10.39□□□□□ -0.75
CLCN3-202ENST00000360642 TSR1Q2NL82 804 aaKnown RBP10.39□□□□□ -0.75
CLCN3-202ENST00000360642 PPP1R15AO75807 674 aaPredicted RBP10.39□□□□□ -0.75
CLCN3-202ENST00000360642 HIC1Q14526 733 aa10.39□□□□□ -0.75
CLCN3-202ENST00000360642 KCTD17Q8N5Z5 321 aa10.39□□□□□ -0.75
CLCN3-202ENST00000360642 ZBTB7CA1YPR0 619 aa10.38□□□□□ -0.75
CLCN3-202ENST00000360642 ZNF608Q9ULD9 1512 aaPredicted RBP10.38□□□□□ -0.75
CLCN3-202ENST00000360642 FLIIQ13045 1269 aa10.37□□□□□ -0.75
CLCN3-202ENST00000360642 SNRKQ9NRH2 765 aa10.36□□□□□ -0.75
CLCN3-202ENST00000360642 SPDYE16A6NNV3 312 aaPredicted RBP10.36□□□□□ -0.75
CLCN3-202ENST00000360642 BEGAINQ9BUH8 593 aa10.35□□□□□ -0.75
CLCN3-202ENST00000360642 KIAA0586Q9BVV6 1533 aa10.35□□□□□ -0.75
CLCN3-202ENST00000360642 MIA2Q96PC5 1412 aa10.35□□□□□ -0.75
CLCN3-202ENST00000360642 AKNAQ7Z591 1439 aa10.34□□□□□ -0.75
CLCN3-202ENST00000360642 CDK13Q14004 1512 aaKnown RBP10.34□□□□□ -0.75
CLCN3-202ENST00000360642 DISP1Q96F81 1524 aa10.34□□□□□ -0.75
CLCN3-202ENST00000360642 RETREG2Q8NC44 543 aa10.34□□□□□ -0.75
CLCN3-202ENST00000360642 FCHSD2O94868 740 aa10.34□□□□□ -0.75
CLCN3-202ENST00000360642 PCMTD1Q96MG8 357 aaPredicted RBP10.34□□□□□ -0.75
CLCN3-202ENST00000360642 PROSER2Q86WR7 435 aaPredicted RBP10.33□□□□□ -0.76
CLCN3-202ENST00000360642 OXER1Q8TDS5 423 aa10.33□□□□□ -0.76
CLCN3-202ENST00000360642 GCC2Q8IWJ2 1684 aa10.33□□□□□ -0.76
CLCN3-202ENST00000360642 KIAA0556O60303 1618 aa10.33□□□□□ -0.76
CLCN3-202ENST00000360642 FOXD4L5Q5VV16 416 aaPredicted RBP10.33□□□□□ -0.76
CLCN3-202ENST00000360642 FOXD4L4Q8WXT5 416 aaPredicted RBP10.33□□□□□ -0.76
CLCN3-202ENST00000360642 CSPP1Q1MSJ5 1256 aa10.32□□□□□ -0.76
CLCN3-202ENST00000360642 EIF4G3O43432 1585 aaKnown RBP10.32□□□□□ -0.76
CLCN3-202ENST00000360642 GRIN2AQ12879 1464 aa10.32□□□□□ -0.76
CLCN3-202ENST00000360642 KDM5BQ9UGL1 1544 aa10.32□□□□□ -0.76
CLCN3-202ENST00000360642 NPDC1Q9NQX5 325 aaPredicted RBP10.31□□□□□ -0.76
CLCN3-202ENST00000360642 TONSLQ96HA7 1378 aa10.31□□□□□ -0.76
CLCN3-202ENST00000360642 RAD21O60216 631 aa10.31□□□□□ -0.76
CLCN3-202ENST00000360642 CCDC9Q9Y3X0 531 aaKnown RBP10.31□□□□□ -0.76
CLCN3-202ENST00000360642 DENND4BO75064 1496 aaPredicted RBP10.31□□□□□ -0.76
CLCN3-202ENST00000360642 MAP3K7O43318 606 aa10.31□□□□□ -0.76
CLCN3-202ENST00000360642 ILDR1Q86SU0 546 aaPredicted RBP10.31□□□□□ -0.76
CLCN3-202ENST00000360642 SSTR3P32745 418 aaPredicted RBP10.3□□□□□ -0.76
CLCN3-202ENST00000360642 NUP153P49790 1475 aaKnown RBP10.3□□□□□ -0.76
CLCN3-202ENST00000360642 KIF3CO14782 793 aa10.29□□□□□ -0.76
CLCN3-202ENST00000360642 EVI5O60447 810 aa10.29□□□□□ -0.76
CLCN3-202ENST00000360642 ATN1P54259 1190 aaPredicted RBP10.29□□□□□ -0.76
CLCN3-202ENST00000360642 DDX10Q13206 875 aaKnown RBP10.29□□□□□ -0.76
CLCN3-202ENST00000360642 GDPD2Q9HCC8 539 aa10.29□□□□□ -0.76
CLCN3-202ENST00000360642 HIRIP3Q9BW71 556 aaPredicted RBP10.29□□□□□ -0.76
CLCN3-202ENST00000360642 KDM6BO15054 1643 aa10.29□□□□□ -0.76
CLCN3-202ENST00000360642 IRF5Q13568 498 aa10.28□□□□□ -0.76
CLCN3-202ENST00000360642 RAPGEF6Q8TEU7 1601 aa10.28□□□□□ -0.76
CLCN3-202ENST00000360642 RRP7BPQ9NSQ0 103 aa10.28□□□□□ -0.76
CLCN3-202ENST00000360642 MAGI1Q96QZ7 1491 aaPredicted RBP10.28□□□□□ -0.76
CLCN3-202ENST00000360642 FNBP4Q8N3X1 1017 aaPredicted RBP10.28□□□□□ -0.76
CLCN3-202ENST00000360642 KCNH8Q96L42 1107 aa10.28□□□□□ -0.76
CLCN3-202ENST00000360642 BOLA1Q9Y3E2 137 aa10.28□□□□□ -0.76
CLCN3-202ENST00000360642 CHIC2Q9UKJ5 165 aa10.27□□□□□ -0.77
CLCN3-202ENST00000360642 ROCK1Q13464 1354 aa10.26□□□□□ -0.77
CLCN3-202ENST00000360642 COG6Q9Y2V7 657 aa10.26□□□□□ -0.77
CLCN3-202ENST00000360642 POM121CA8CG34 1229 aa10.26□□□□□ -0.77
CLCN3-202ENST00000360642 CEP170Q5SW79 1584 aa10.26□□□□□ -0.77
CLCN3-202ENST00000360642 SYNJ2O15056 1496 aa10.26□□□□□ -0.77
CLCN3-202ENST00000360642 A6NJR5 290 aa10.26□□□□□ -0.77
CLCN3-202ENST00000360642 MTMR7Q9Y216 660 aa10.26□□□□□ -0.77
CLCN3-202ENST00000360642 DAPK1P53355 1430 aa10.25□□□□□ -0.77
CLCN3-202ENST00000360642 DNMT1P26358 1616 aaKnown RBP10.25□□□□□ -0.77
CLCN3-202ENST00000360642 CCDC97Q96F63 343 aaPredicted RBP10.25□□□□□ -0.77
CLCN3-202ENST00000360642 RFX1P22670 979 aa10.25□□□□□ -0.77
CLCN3-202ENST00000360642 ABCC5O15440 1437 aa10.24□□□□□ -0.77
CLCN3-202ENST00000360642 EVX2Q03828 476 aa10.24□□□□□ -0.77
CLCN3-202ENST00000360642 ERCC6Q03468 1493 aa10.24□□□□□ -0.77
CLCN3-202ENST00000360642 MYSM1Q5VVJ2 828 aa10.24□□□□□ -0.77
CLCN3-202ENST00000360642 MPHOSPH9Q99550 1183 aa10.24□□□□□ -0.77
CLCN3-202ENST00000360642 GPCPD1Q9NPB8 672 aa10.23□□□□□ -0.77
CLCN3-202ENST00000360642 CCER2I3L3R5 266 aa10.23□□□□□ -0.77
CLCN3-202ENST00000360642 CDK11AQ9UQ88 783 aaPredicted RBP10.22□□□□□ -0.77
CLCN3-202ENST00000360642 ZNF330Q9Y3S2 320 aaPredicted RBP10.22□□□□□ -0.77
CLCN3-202ENST00000360642 NUP160Q12769 1436 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms