RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 CFAP65Q6ZU64 1925 aaKnown RBP8.19□□□□□ -1.1
CSDE1-202ENST00000339438 COL16A1Q07092 1604 aaPredicted RBP8.18□□□□□ -1.1
CSDE1-202ENST00000339438 MYOM2P54296 1465 aa8.18□□□□□ -1.1
CSDE1-202ENST00000339438 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.17□□□□□ -1.1
CSDE1-202ENST00000339438 ADAMTS13Q76LX8 1427 aa8.16□□□□□ -1.1
CSDE1-202ENST00000339438 NRAPQ86VF7 1730 aa8.16□□□□□ -1.1
CSDE1-202ENST00000339438 AFAP1Q8N556 730 aa8.16□□□□□ -1.1
CSDE1-202ENST00000339438 PPP6R1Q9UPN7 881 aa8.16□□□□□ -1.1
CSDE1-202ENST00000339438 CCNB3Q8WWL7 1395 aa8.15□□□□□ -1.1
CSDE1-202ENST00000339438 RBM19Q9Y4C8 960 aaKnown RBP8.15□□□□□ -1.11
CSDE1-202ENST00000339438 AHDC1Q5TGY3 1603 aaPredicted RBP8.14□□□□□ -1.11
CSDE1-202ENST00000339438 COL24A1Q17RW2 1714 aa8.14□□□□□ -1.11
CSDE1-202ENST00000339438 MST1RQ04912 1400 aa8.14□□□□□ -1.11
CSDE1-202ENST00000339438 MON2Q7Z3U7 1717 aa8.14□□□□□ -1.11
CSDE1-202ENST00000339438 TECPR2O15040 1411 aa8.14□□□□□ -1.11
CSDE1-202ENST00000339438 KIF1AQ12756 1690 aa8.14□□□□□ -1.11
CSDE1-202ENST00000339438 PLEKHD1A6NEE1 506 aa8.13□□□□□ -1.11
CSDE1-202ENST00000339438 CAMTA1Q9Y6Y1 1673 aa8.13□□□□□ -1.11
CSDE1-202ENST00000339438 DLC1Q96QB1 1528 aa8.13□□□□□ -1.11
CSDE1-202ENST00000339438 ZMYM3Q14202 1370 aa8.13□□□□□ -1.11
CSDE1-202ENST00000339438 COL18A1P39060 1754 aa8.12□□□□□ -1.11
CSDE1-202ENST00000339438 UBTFP17480 764 aaKnown RBP8.11□□□□□ -1.11
CSDE1-202ENST00000339438 ANO8Q9HCE9 1232 aaPredicted RBP8.11□□□□□ -1.11
CSDE1-202ENST00000339438 PTPRUQ92729 1446 aa8.11□□□□□ -1.11
CSDE1-202ENST00000339438 SHANK3Q9BYB0 1731 aa8.11□□□□□ -1.11
CSDE1-202ENST00000339438 LRRC7Q96NW7 1537 aa8.11□□□□□ -1.11
CSDE1-202ENST00000339438 RSPH4AQ5TD94 716 aa8.11□□□□□ -1.11
CSDE1-202ENST00000339438 EFCAB2Q5VUJ9 269 aa8.11□□□□□ -1.11
CSDE1-202ENST00000339438 LMO7Q8WWI1 1683 aa8.1□□□□□ -1.11
CSDE1-202ENST00000339438 CDC42BPGQ6DT37 1551 aa8.1□□□□□ -1.11
CSDE1-202ENST00000339438 PIK3C2GO75747 1445 aa8.09□□□□□ -1.11
CSDE1-202ENST00000339438 MTUS2Q5JR59 1369 aa8.09□□□□□ -1.11
CSDE1-202ENST00000339438 KIF15Q9NS87 1388 aa8.09□□□□□ -1.11
CSDE1-202ENST00000339438 SCAF11Q99590 1463 aaKnown RBP8.09□□□□□ -1.11
CSDE1-202ENST00000339438 MED1Q15648 1581 aaPredicted RBP8.09□□□□□ -1.12
CSDE1-202ENST00000339438 ANKRD50Q9ULJ7 1429 aa8.08□□□□□ -1.12
CSDE1-202ENST00000339438 ROBO1Q9Y6N7 1651 aa8.08□□□□□ -1.12
CSDE1-202ENST00000339438 NKTRP30414 1462 aaKnown RBP8.08□□□□□ -1.12
CSDE1-202ENST00000339438 PLCH1Q4KWH8 1693 aa8.08□□□□□ -1.12
CSDE1-202ENST00000339438 HNRNPMP52272 730 aaKnown RBP eCLIP8.07□□□□□ -1.12
CSDE1-202ENST00000339438 ITSN1Q15811 1721 aa8.07□□□□□ -1.12
CSDE1-202ENST00000339438 QRICH2Q9H0J4 1663 aa8.07□□□□□ -1.12
CSDE1-202ENST00000339438 FANCIQ9NVI1 1328 aa8.05□□□□□ -1.12
CSDE1-202ENST00000339438 UHRF1BP1Q6BDS2 1440 aa8.05□□□□□ -1.12
CSDE1-202ENST00000339438 PEAK1Q9H792 1746 aa8.03□□□□□ -1.12
CSDE1-202ENST00000339438 KCNH8Q96L42 1107 aa8.03□□□□□ -1.12
CSDE1-202ENST00000339438 PIK3C2AO00443 1686 aa8.03□□□□□ -1.12
CSDE1-202ENST00000339438 VIRMAQ69YN4 1812 aaKnown RBP8.03□□□□□ -1.12
CSDE1-202ENST00000339438 ANKRD30BQ9BXX2 1392 aa8.03□□□□□ -1.12
CSDE1-202ENST00000339438 PTCH1Q13635 1447 aa8.02□□□□□ -1.12
CSDE1-202ENST00000339438 NCOA3Q9Y6Q9 1424 aa8.02□□□□□ -1.13
CSDE1-202ENST00000339438 EP400Q96L91 3159 aa8.02□□□□□ -1.13
CSDE1-202ENST00000339438 DHX57Q6P158 1386 aaKnown RBP8.02□□□□□ -1.13
CSDE1-202ENST00000339438 SALL2Q9Y467 1007 aaPredicted RBP8.01□□□□□ -1.13
CSDE1-202ENST00000339438 NWD2Q9ULI1 1742 aa8.01□□□□□ -1.13
CSDE1-202ENST00000339438 NPM1P06748 294 aaKnown RBP eCLIP8□□□□□ -1.13
CSDE1-202ENST00000339438 PLEKHG1Q9ULL1 1385 aa7.99□□□□□ -1.13
CSDE1-202ENST00000339438 UBE2Q2Q8WVN8 375 aa7.99□□□□□ -1.13
CSDE1-202ENST00000339438 RGPD3A6NKT7 1758 aaPredicted RBP7.99□□□□□ -1.13
CSDE1-202ENST00000339438 RGPD4Q7Z3J3 1758 aa7.99□□□□□ -1.13
CSDE1-202ENST00000339438 CICQ96RK0 1608 aaPredicted RBP7.99□□□□□ -1.13
CSDE1-202ENST00000339438 RGPD1P0DJD0 1748 aa7.98□□□□□ -1.13
CSDE1-202ENST00000339438 DEKP35659 375 aaKnown RBP7.98□□□□□ -1.13
CSDE1-202ENST00000339438 BCANQ96GW7 911 aa7.98□□□□□ -1.13
CSDE1-202ENST00000339438 PHLPP1O60346 1717 aa7.98□□□□□ -1.13
CSDE1-202ENST00000339438 SPAG9O60271 1321 aaKnown RBP7.98□□□□□ -1.13
CSDE1-202ENST00000339438 ANKRD30AQ9BXX3 1397 aa7.98□□□□□ -1.13
CSDE1-202ENST00000339438 FKBP8Q14318 412 aa7.98□□□□□ -1.13
CSDE1-202ENST00000339438 CDK11AQ9UQ88 783 aaPredicted RBP7.98□□□□□ -1.13
CSDE1-202ENST00000339438 TMEM2Q9UHN6 1383 aa7.97□□□□□ -1.13
CSDE1-202ENST00000339438 ADAMTS7Q9UKP4 1686 aa7.97□□□□□ -1.13
CSDE1-202ENST00000339438 THSD7AQ9UPZ6 1657 aa7.97□□□□□ -1.13
CSDE1-202ENST00000339438 CFDP1Q9UEE9 299 aaPredicted RBP7.97□□□□□ -1.13
CSDE1-202ENST00000339438 PXDNQ92626 1479 aa7.96□□□□□ -1.13
CSDE1-202ENST00000339438 SBF2Q86WG5 1849 aa7.96□□□□□ -1.13
CSDE1-202ENST00000339438 TULP4Q9NRJ4 1543 aa7.96□□□□□ -1.14
CSDE1-202ENST00000339438 FAM208AQ9UK61 1670 aaKnown RBP7.96□□□□□ -1.14
CSDE1-202ENST00000339438 DCCP43146 1447 aa7.95□□□□□ -1.14
CSDE1-202ENST00000339438 TNRQ92752 1358 aa7.95□□□□□ -1.14
CSDE1-202ENST00000339438 CD163L1Q9NR16 1453 aa7.95□□□□□ -1.14
CSDE1-202ENST00000339438 TNS1Q9HBL0 1735 aaKnown RBP7.95□□□□□ -1.14
CSDE1-202ENST00000339438 TRHP20396 242 aaPredicted RBP7.94□□□□□ -1.14
CSDE1-202ENST00000339438 BRWD3Q6RI45 1802 aa7.94□□□□□ -1.14
CSDE1-202ENST00000339438 ERICH6BQ5W0A0 696 aa7.94□□□□□ -1.14
CSDE1-202ENST00000339438 MYT1LQ9UL68 1186 aa7.94□□□□□ -1.14
CSDE1-202ENST00000339438 RGPD5Q99666 1765 aa7.94□□□□□ -1.14
CSDE1-202ENST00000339438 ATP1B4Q9UN42 357 aaPredicted RBP7.94□□□□□ -1.14
CSDE1-202ENST00000339438 KIF20BQ96Q89 1820 aa7.94□□□□□ -1.14
CSDE1-202ENST00000339438 GPRASP1Q5JY77 1395 aa7.94□□□□□ -1.14
CSDE1-202ENST00000339438 QSER1Q2KHR3 1735 aa7.93□□□□□ -1.14
CSDE1-202ENST00000339438 PIK3R4Q99570 1358 aa7.93□□□□□ -1.14
CSDE1-202ENST00000339438 NPHP4O75161 1426 aaPredicted RBP7.93□□□□□ -1.14
CSDE1-202ENST00000339438 SSH2Q76I76 1423 aa7.92□□□□□ -1.14
CSDE1-202ENST00000339438 RREB1Q92766 1687 aa7.92□□□□□ -1.14
CSDE1-202ENST00000339438 ITGAEP38570 1179 aa7.92□□□□□ -1.14
CSDE1-202ENST00000339438 ARID3CA6NKF2 412 aa7.92□□□□□ -1.14
CSDE1-202ENST00000339438 SETD5Q9C0A6 1442 aa7.91□□□□□ -1.14
CSDE1-202ENST00000339438 RAB3GAP2Q9H2M9 1393 aa7.9□□□□□ -1.14
CSDE1-202ENST00000339438 PARP4Q9UKK3 1724 aaKnown RBP7.9□□□□□ -1.14
CSDE1-202ENST00000339438 SIPA1L3O60292 1781 aaPredicted RBP7.9□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms