RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 RAB3GAP2Q9H2M9 1393 aa23.63■■□□□ 1.37
CLN3-201ENST00000333496 IQSEC2Q5JU85 1478 aa23.62■■□□□ 1.37
CLN3-201ENST00000333496 CPS1P31327 1500 aa23.61■■□□□ 1.37
CLN3-201ENST00000333496 MPHOSPH9Q99550 1183 aa23.61■■□□□ 1.37
CLN3-201ENST00000333496 FOXD1Q16676 465 aa23.6■■□□□ 1.37
CLN3-201ENST00000333496 PLEKHG1Q9ULL1 1385 aa23.57■■□□□ 1.36
CLN3-201ENST00000333496 HDGFP51858 240 aaKnown RBP23.56■■□□□ 1.36
CLN3-201ENST00000333496 NUTM2DQ5VT03 806 aaPredicted RBP23.56■■□□□ 1.36
CLN3-201ENST00000333496 SLC26A8Q96RN1 970 aa23.56■■□□□ 1.36
CLN3-201ENST00000333496 ACIN1Q9UKV3 1341 aaKnown RBP23.56■■□□□ 1.36
CLN3-201ENST00000333496 SENP3Q9H4L4 574 aaPredicted RBP23.55■■□□□ 1.36
CLN3-201ENST00000333496 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.55■■□□□ 1.36
CLN3-201ENST00000333496 PPP1R15AO75807 674 aaPredicted RBP23.54■■□□□ 1.36
CLN3-201ENST00000333496 XIRP1Q702N8 1843 aaKnown RBP23.52■■□□□ 1.36
CLN3-201ENST00000333496 NEXMIFQ5QGS0 1516 aa23.52■■□□□ 1.36
CLN3-201ENST00000333496 LRRC7Q96NW7 1537 aa23.52■■□□□ 1.36
CLN3-201ENST00000333496 CHD2O14647 1828 aaKnown RBP23.51■■□□□ 1.35
CLN3-201ENST00000333496 ZNF326Q5BKZ1 582 aaKnown RBP23.51■■□□□ 1.35
CLN3-201ENST00000333496 BCANQ96GW7 911 aa23.51■■□□□ 1.35
CLN3-201ENST00000333496 ADAMTS13Q76LX8 1427 aa23.49■■□□□ 1.35
CLN3-201ENST00000333496 NRXN3Q9Y4C0 1643 aa23.49■■□□□ 1.35
CLN3-201ENST00000333496 HRCP23327 699 aa23.48■■□□□ 1.35
CLN3-201ENST00000333496 NWD1Q149M9 1564 aa23.47■■□□□ 1.35
CLN3-201ENST00000333496 KCNA6P17658 529 aa23.46■■□□□ 1.35
CLN3-201ENST00000333496 TBX22Q9Y458 520 aa23.46■■□□□ 1.35
CLN3-201ENST00000333496 PPLO60437 1756 aa23.46■■□□□ 1.35
CLN3-201ENST00000333496 CCDC144AA2RUR9 1427 aa23.45■■□□□ 1.35
CLN3-201ENST00000333496 DIP2AQ14689 1571 aa23.45■■□□□ 1.34
CLN3-201ENST00000333496 SETBP1Q9Y6X0 1596 aa23.44■■□□□ 1.34
CLN3-201ENST00000333496 UBAP1LF5GYI3 381 aa23.43■■□□□ 1.34
CLN3-201ENST00000333496 ALKQ9UM73 1620 aa23.42■■□□□ 1.34
CLN3-201ENST00000333496 SPATA31E1Q6ZUB1 1445 aa23.41■■□□□ 1.34
CLN3-201ENST00000333496 IFT172Q9UG01 1749 aa23.4■■□□□ 1.34
CLN3-201ENST00000333496 NKTRP30414 1462 aaKnown RBP23.39■■□□□ 1.34
CLN3-201ENST00000333496 RPGRIP1LQ68CZ1 1315 aa23.38■■□□□ 1.33
CLN3-201ENST00000333496 PIK3R4Q99570 1358 aa23.37■■□□□ 1.33
CLN3-201ENST00000333496 SETD1AO15047 1707 aaKnown RBP23.37■■□□□ 1.33
CLN3-201ENST00000333496 TMEM94Q12767 1356 aa23.36■■□□□ 1.33
CLN3-201ENST00000333496 PTPRUQ92729 1446 aa23.36■■□□□ 1.33
CLN3-201ENST00000333496 ANKRD30BQ9BXX2 1392 aa23.35■■□□□ 1.33
CLN3-201ENST00000333496 VGFO15240 615 aaPredicted RBP23.35■■□□□ 1.33
CLN3-201ENST00000333496 RGL3Q3MIN7 710 aa23.35■■□□□ 1.33
CLN3-201ENST00000333496 RBM33Q96EV2 1170 aaKnown RBP23.35■■□□□ 1.33
CLN3-201ENST00000333496 TOM1O60784 492 aa23.34■■□□□ 1.33
CLN3-201ENST00000333496 PROSER2Q86WR7 435 aaPredicted RBP23.34■■□□□ 1.33
CLN3-201ENST00000333496 METP08581 1390 aa23.33■■□□□ 1.32
CLN3-201ENST00000333496 XRN1Q8IZH2 1706 aaKnown RBP23.32■■□□□ 1.32
CLN3-201ENST00000333496 PIP4K2BP78356 416 aa23.3■■□□□ 1.32
CLN3-201ENST00000333496 AMOTL2Q9Y2J4 779 aa23.3■■□□□ 1.32
CLN3-201ENST00000333496 ADGRF5Q8IZF2 1346 aa23.28■■□□□ 1.32
CLN3-201ENST00000333496 SCAF1Q9H7N4 1312 aaKnown RBP23.25■■□□□ 1.31
CLN3-201ENST00000333496 NCOA3Q9Y6Q9 1424 aa23.23■■□□□ 1.31
CLN3-201ENST00000333496 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.22■■□□□ 1.31
CLN3-201ENST00000333496 PIK3C2GO75747 1445 aa23.21■■□□□ 1.31
CLN3-201ENST00000333496 MSH6P52701 1360 aa23.21■■□□□ 1.31
CLN3-201ENST00000333496 TRIM26Q12899 539 aaPredicted RBP23.21■■□□□ 1.31
CLN3-201ENST00000333496 MYOM2P54296 1465 aa23.19■■□□□ 1.3
CLN3-201ENST00000333496 NRXN1Q9ULB1 1477 aa23.19■■□□□ 1.3
CLN3-201ENST00000333496 HSPA1LP34931 641 aa23.17■■□□□ 1.3
CLN3-201ENST00000333496 ASXL1Q8IXJ9 1541 aa23.17■■□□□ 1.3
CLN3-201ENST00000333496 PRAG1Q86YV5 1406 aa23.15■■□□□ 1.3
CLN3-201ENST00000333496 NALCNQ8IZF0 1738 aa23.15■■□□□ 1.3
CLN3-201ENST00000333496 ROBO1Q9Y6N7 1651 aa23.15■■□□□ 1.3
CLN3-201ENST00000333496 C14orf37Q86TY3 774 aa23.15■■□□□ 1.3
CLN3-201ENST00000333496 C19orf44Q9H6X5 657 aa23.15■■□□□ 1.3
CLN3-201ENST00000333496 PTCH1Q13635 1447 aa23.14■■□□□ 1.29
CLN3-201ENST00000333496 FAM135BQ49AJ0 1406 aa23.13■■□□□ 1.29
CLN3-201ENST00000333496 ROBO2Q9HCK4 1378 aa23.13■■□□□ 1.29
CLN3-201ENST00000333496 LAMC1P11047 1609 aa23.12■■□□□ 1.29
CLN3-201ENST00000333496 DHX57Q6P158 1386 aaKnown RBP23.12■■□□□ 1.29
CLN3-201ENST00000333496 C14orf93Q9H972 538 aaKnown RBP23.11■■□□□ 1.29
CLN3-201ENST00000333496 SLAIN2Q9P270 581 aa23.11■■□□□ 1.29
CLN3-201ENST00000333496 TMEM132EQ6IEE7 984 aa23.11■■□□□ 1.29
CLN3-201ENST00000333496 KNDC1Q76NI1 1749 aa23.1■■□□□ 1.29
CLN3-201ENST00000333496 DCAF11Q8TEB1 546 aa23.1■■□□□ 1.29
CLN3-201ENST00000333496 CFAP70Q5T0N1 1121 aa23.09■■□□□ 1.29
CLN3-201ENST00000333496 ADGRL3Q9HAR2 1447 aa23.09■■□□□ 1.29
CLN3-201ENST00000333496 CADPS2Q86UW7 1296 aa23.08■■□□□ 1.29
CLN3-201ENST00000333496 KDM2AQ9Y2K7 1162 aa23.08■■□□□ 1.29
CLN3-201ENST00000333496 DCCP43146 1447 aa23.08■■□□□ 1.29
CLN3-201ENST00000333496 LRPPRCP42704 1394 aaKnown RBP23.07■■□□□ 1.28
CLN3-201ENST00000333496 TECPR2O15040 1411 aa23.07■■□□□ 1.28
CLN3-201ENST00000333496 ATF3P18847 181 aa23.07■■□□□ 1.28
CLN3-201ENST00000333496 STK26Q9P289 416 aa23.06■■□□□ 1.28
CLN3-201ENST00000333496 YTHDC2Q9H6S0 1430 aaKnown RBP23.05■■□□□ 1.28
CLN3-201ENST00000333496 ABCC11Q96J66 1382 aa23.05■■□□□ 1.28
CLN3-201ENST00000333496 STAC3Q96MF2 364 aa23.04■■□□□ 1.28
CLN3-201ENST00000333496 ADGRB1O14514 1584 aa23.02■■□□□ 1.28
CLN3-201ENST00000333496 SIN3AQ96ST3 1273 aa23.02■■□□□ 1.28
CLN3-201ENST00000333496 MST1RQ04912 1400 aa23.02■■□□□ 1.28
CLN3-201ENST00000333496 PHLPP1O60346 1717 aa23.01■■□□□ 1.27
CLN3-201ENST00000333496 WAPLQ7Z5K2 1190 aa23■■□□□ 1.27
CLN3-201ENST00000333496 PLEKHH1Q9ULM0 1364 aa22.99■■□□□ 1.27
CLN3-201ENST00000333496 BRINP3Q76B58 766 aa22.97■■□□□ 1.27
CLN3-201ENST00000333496 SIRT1Q96EB6 747 aa22.96■■□□□ 1.27
CLN3-201ENST00000333496 KIAA1210Q9ULL0 1709 aa22.95■■□□□ 1.27
CLN3-201ENST00000333496 COL16A1Q07092 1604 aaPredicted RBP22.95■■□□□ 1.26
CLN3-201ENST00000333496 CDC42BPGQ6DT37 1551 aa22.95■■□□□ 1.26
CLN3-201ENST00000333496 AHDC1Q5TGY3 1603 aaPredicted RBP22.94■■□□□ 1.26
CLN3-201ENST00000333496 DLC1Q96QB1 1528 aa22.94■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 99.3 ms