RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 NISCHQ9Y2I1 1504 aa38.75■■■■□ 3.79
CLN3-201ENST00000333496 CCDC180Q9P1Z9 1646 aa34.51■■■■□ 3.12
CLN3-201ENST00000333496 ABCC9O60706 1549 aa33.84■■■■□ 3.01
CLN3-201ENST00000333496 RB1CC1Q8TDY2 1594 aa32.49■■■□□ 2.79
CLN3-201ENST00000333496 NACADO15069 1562 aa32.43■■■□□ 2.78
CLN3-201ENST00000333496 DCAF8L2P0C7V8 631 aa32.37■■■□□ 2.77
CLN3-201ENST00000333496 ZCCHC6Q5VYS8 1495 aaKnown RBP32.26■■■□□ 2.75
CLN3-201ENST00000333496 MYO15BQ96JP2 1530 aa32.2■■■□□ 2.75
CLN3-201ENST00000333496 DCAF1Q9Y4B6 1507 aa32.04■■■□□ 2.72
CLN3-201ENST00000333496 UNC13AQ9UPW8 1703 aa31.9■■■□□ 2.7
CLN3-201ENST00000333496 PABPN1Q86U42 306 aaKnown RBP eCLIP31.6■■■□□ 2.65
CLN3-201ENST00000333496 BICRAQ9NZM4 1560 aa31.59■■■□□ 2.65
CLN3-201ENST00000333496 SCRIBQ14160 1630 aa31.48■■■□□ 2.63
CLN3-201ENST00000333496 DNAJC5BQ9UF47 199 aa31.2■■■□□ 2.58
CLN3-201ENST00000333496 SHROOM4Q9ULL8 1493 aa31.13■■■□□ 2.57
CLN3-201ENST00000333496 EIF4G1Q04637 1599 aaKnown RBP30.72■■■□□ 2.51
CLN3-201ENST00000333496 CC2D2AQ9P2K1 1620 aa30.63■■■□□ 2.49
CLN3-201ENST00000333496 CECR2Q9BXF3 1484 aa30.39■■■□□ 2.46
CLN3-201ENST00000333496 SMARCA4P51532 1647 aa30.1■■■□□ 2.41
CLN3-201ENST00000333496 BAZ1AQ9NRL2 1556 aaPredicted RBP30.02■■■□□ 2.4
CLN3-201ENST00000333496 ATAD2BQ9ULI0 1458 aa29.94■■■□□ 2.38
CLN3-201ENST00000333496 NCAPD3P42695 1498 aa29.93■■■□□ 2.38
CLN3-201ENST00000333496 MROH2BQ7Z745 1585 aa29.88■■■□□ 2.37
CLN3-201ENST00000333496 SMARCA2P51531 1590 aa29.88■■■□□ 2.37
CLN3-201ENST00000333496 PEG3Q9GZU2 1588 aa29.81■■■□□ 2.36
CLN3-201ENST00000333496 HMGXB3Q12766 1538 aa29.78■■■□□ 2.36
CLN3-201ENST00000333496 BAZ1BQ9UIG0 1483 aaKnown RBP29.67■■■□□ 2.34
CLN3-201ENST00000333496 WIZO95785 1651 aa29.59■■■□□ 2.33
CLN3-201ENST00000333496 RSF1Q96T23 1441 aaPredicted RBP29.49■■■□□ 2.31
CLN3-201ENST00000333496 NESP48681 1621 aa29.29■■■□□ 2.28
CLN3-201ENST00000333496 TOP2AP11388 1531 aaKnown RBP29.2■■■□□ 2.27
CLN3-201ENST00000333496 LAMC3Q9Y6N6 1575 aa29.17■■■□□ 2.26
CLN3-201ENST00000333496 ERCC6Q03468 1493 aa29.12■■■□□ 2.25
CLN3-201ENST00000333496 CADPSQ9ULU8 1353 aa29.04■■■□□ 2.24
CLN3-201ENST00000333496 KIF21AQ7Z4S6 1674 aa28.98■■■□□ 2.23
CLN3-201ENST00000333496 PDS5BQ9NTI5 1447 aa28.92■■■□□ 2.22
CLN3-201ENST00000333496 CCDC88BA6NC98 1476 aa28.88■■■□□ 2.21
CLN3-201ENST00000333496 THOC2Q8NI27 1593 aaKnown RBP28.87■■■□□ 2.21
CLN3-201ENST00000333496 CUX2O14529 1486 aa28.87■■■□□ 2.21
CLN3-201ENST00000333496 CFTRP13569 1480 aa28.87■■■□□ 2.21
CLN3-201ENST00000333496 PRDM2Q13029 1718 aa28.72■■■□□ 2.19
CLN3-201ENST00000333496 FANCD2Q9BXW9 1451 aa28.72■■■□□ 2.19
CLN3-201ENST00000333496 CEP164Q9UPV0 1460 aa28.68■■■□□ 2.18
CLN3-201ENST00000333496 MRC2Q9UBG0 1479 aa28.66■■■□□ 2.18
CLN3-201ENST00000333496 SUPT5HO00267 1087 aaKnown RBP28.64■■■□□ 2.18
CLN3-201ENST00000333496 WDR62O43379 1518 aa28.59■■■□□ 2.17
CLN3-201ENST00000333496 URB2Q14146 1524 aaKnown RBP28.47■■■□□ 2.15
CLN3-201ENST00000333496 TOPBP1Q92547 1522 aa28.26■■■□□ 2.11
CLN3-201ENST00000333496 DNMBPQ6XZF7 1577 aa28.21■■■□□ 2.11
CLN3-201ENST00000333496 ABCC8Q09428 1581 aa28.21■■■□□ 2.11
CLN3-201ENST00000333496 DNAJC5Q9H3Z4 198 aa28.11■■■□□ 2.09
CLN3-201ENST00000333496 IFT140Q96RY7 1462 aa28.07■■■□□ 2.08
CLN3-201ENST00000333496 CUX1P39880 1505 aa28.04■■■□□ 2.08
CLN3-201ENST00000333496 POLA1P09884 1462 aaPredicted RBP28.02■■■□□ 2.08
CLN3-201ENST00000333496 ZNF608Q9ULD9 1512 aaPredicted RBP28■■■□□ 2.07
CLN3-201ENST00000333496 TARBP1Q13395 1621 aaKnown RBP28■■■□□ 2.07
CLN3-201ENST00000333496 FGD5Q6ZNL6 1462 aa27.94■■■□□ 2.06
CLN3-201ENST00000333496 RAD54L2Q9Y4B4 1467 aa27.91■■■□□ 2.06
CLN3-201ENST00000333496 EIF4G3O43432 1585 aaKnown RBP27.9■■■□□ 2.06
CLN3-201ENST00000333496 SOGA1O94964 1423 aa27.88■■■□□ 2.05
CLN3-201ENST00000333496 AQRO60306 1485 aaKnown RBP eCLIP27.82■■■□□ 2.046e-6■■■■□ 25.1
CLN3-201ENST00000333496 BIVM-ERCC5R4GMW8 1640 aa27.78■■■□□ 2.04
CLN3-201ENST00000333496 WRNQ14191 1432 aaPredicted RBP eCLIP27.78■■■□□ 2.04
CLN3-201ENST00000333496 SYNJ1O43426 1573 aa27.77■■■□□ 2.04
CLN3-201ENST00000333496 WDR97A6NE52 1622 aa27.76■■■□□ 2.04
CLN3-201ENST00000333496 TOP2BQ02880 1626 aa27.76■■■□□ 2.04
CLN3-201ENST00000333496 TDRD9Q8NDG6 1382 aaKnown RBP27.74■■■□□ 2.03
CLN3-201ENST00000333496 ABCA10Q8WWZ4 1543 aa27.65■■■□□ 2.02
CLN3-201ENST00000333496 OSCARQ8IYS5 282 aa27.64■■■□□ 2.02
CLN3-201ENST00000333496 CHD1O14646 1710 aa27.6■■■□□ 2.01
CLN3-201ENST00000333496 ABCA5Q8WWZ7 1642 aa27.58■■■□□ 2.01
CLN3-201ENST00000333496 PBRM1Q86U86 1689 aa27.57■■■□□ 2
CLN3-201ENST00000333496 GAPVD1Q14C86 1478 aa27.56■■■□□ 2
CLN3-201ENST00000333496 GRIN2BQ13224 1484 aa27.56■■■□□ 2
CLN3-201ENST00000333496 SNAPC4Q5SXM2 1469 aa27.55■■■□□ 2
CLN3-201ENST00000333496 MAGI1Q96QZ7 1491 aaPredicted RBP27.5■■□□□ 1.99
CLN3-201ENST00000333496 FBLN2P98095 1184 aa27.45■■□□□ 1.99
CLN3-201ENST00000333496 SYNJ2O15056 1496 aa27.39■■□□□ 1.98
CLN3-201ENST00000333496 CHMP7Q8WUX9 453 aaPredicted RBP27.37■■□□□ 1.97
CLN3-201ENST00000333496 ERICH3Q5RHP9 1530 aa27.32■■□□□ 1.96
CLN3-201ENST00000333496 ADAMTS12P58397 1594 aa27.31■■□□□ 1.96
CLN3-201ENST00000333496 RIMBP3CA6NJZ7 1639 aa27.28■■□□□ 1.96
CLN3-201ENST00000333496 RIMBP3BA6NNM3 1639 aa27.28■■□□□ 1.96
CLN3-201ENST00000333496 RIMBP3Q9UFD9 1639 aa27.28■■□□□ 1.96
CLN3-201ENST00000333496 CLASP1Q7Z460 1538 aa27.26■■□□□ 1.95
CLN3-201ENST00000333496 ARHGEF11O15085 1522 aa27.24■■□□□ 1.95
CLN3-201ENST00000333496 FHAD1B1AJZ9 1412 aa27.22■■□□□ 1.95
CLN3-201ENST00000333496 GRIN2AQ12879 1464 aa27.22■■□□□ 1.95
CLN3-201ENST00000333496 KIF27Q86VH2 1401 aa27.18■■□□□ 1.94
CLN3-201ENST00000333496 TRIM41Q8WV44 630 aa27.13■■□□□ 1.93
CLN3-201ENST00000333496 CEP170Q5SW79 1584 aa27.13■■□□□ 1.93
CLN3-201ENST00000333496 IGF1RP08069 1367 aa27.12■■□□□ 1.93
CLN3-201ENST00000333496 NUP160Q12769 1436 aa27.11■■□□□ 1.93
CLN3-201ENST00000333496 CUL7Q14999 1698 aa27.06■■□□□ 1.92
CLN3-201ENST00000333496 ARAP1Q96P48 1450 aa27.03■■□□□ 1.92
CLN3-201ENST00000333496 RUSC2Q8N2Y8 1516 aa27■■□□□ 1.91
CLN3-201ENST00000333496 CYB5RLQ6IPT4 315 aa26.97■■□□□ 1.91
CLN3-201ENST00000333496 SHROOM2Q13796 1616 aa26.95■■□□□ 1.91
CLN3-201ENST00000333496 CARMIL1Q5VZK9 1371 aa26.94■■□□□ 1.9
CLN3-201ENST00000333496 ERCC6L2Q5T890 1561 aa26.91■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms