RNA–Protein interactions for RNA: ENST00000330374.6

VMA21-201, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VMA21, Length 4,717 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-201ENST00000330374 GZF1Q9H116 711 aaPredicted RBP10.18□□□□□ -0.78
VMA21-201ENST00000330374 CCDC144AA2RUR9 1427 aa10.17□□□□□ -0.78
VMA21-201ENST00000330374 CHMP7Q8WUX9 453 aaPredicted RBP10.17□□□□□ -0.78
VMA21-201ENST00000330374 COG6Q9Y2V7 657 aa10.17□□□□□ -0.78
VMA21-201ENST00000330374 PANK1Q8TE04 598 aa10.16□□□□□ -0.78
VMA21-201ENST00000330374 SAMD1Q6SPF0 538 aaPredicted RBP10.16□□□□□ -0.78
VMA21-201ENST00000330374 DISP1Q96F81 1524 aa10.16□□□□□ -0.78
VMA21-201ENST00000330374 BLMP54132 1417 aaPredicted RBP10.15□□□□□ -0.78
VMA21-201ENST00000330374 ZNF608Q9ULD9 1512 aaPredicted RBP10.15□□□□□ -0.78
VMA21-201ENST00000330374 RAPGEF6Q8TEU7 1601 aa10.15□□□□□ -0.78
VMA21-201ENST00000330374 PRAG1Q86YV5 1406 aa10.14□□□□□ -0.79
VMA21-201ENST00000330374 ERBINQ96RT1 1412 aa10.14□□□□□ -0.79
VMA21-201ENST00000330374 TNNT2P45379 298 aaPredicted RBP10.14□□□□□ -0.79
VMA21-201ENST00000330374 DMRT2Q9Y5R5 561 aa10.14□□□□□ -0.79
VMA21-201ENST00000330374 UBE2Q2Q8WVN8 375 aa10.14□□□□□ -0.79
VMA21-201ENST00000330374 BCL2L13Q9BXK5 485 aa10.14□□□□□ -0.79
VMA21-201ENST00000330374 SLFN5Q08AF3 891 aa10.14□□□□□ -0.79
VMA21-201ENST00000330374 TARBP1Q13395 1621 aaKnown RBP10.14□□□□□ -0.79
VMA21-201ENST00000330374 PBRM1Q86U86 1689 aa10.13□□□□□ -0.79
VMA21-201ENST00000330374 CCDC9Q9Y3X0 531 aaKnown RBP10.13□□□□□ -0.79
VMA21-201ENST00000330374 ADAMTS12P58397 1594 aa10.13□□□□□ -0.79
VMA21-201ENST00000330374 KIAA0556O60303 1618 aa10.13□□□□□ -0.79
VMA21-201ENST00000330374 RRP7AQ9Y3A4 280 aaKnown RBP10.13□□□□□ -0.79
VMA21-201ENST00000330374 ZMYM4Q5VZL5 1548 aa10.13□□□□□ -0.79
VMA21-201ENST00000330374 ARHGEF12Q9NZN5 1544 aa10.13□□□□□ -0.79
VMA21-201ENST00000330374 BECN1Q14457 450 aa10.13□□□□□ -0.79
VMA21-201ENST00000330374 ADGBQ8N7X0 1667 aa10.13□□□□□ -0.79
VMA21-201ENST00000330374 FAM43AQ8N2R8 423 aa10.12□□□□□ -0.79
VMA21-201ENST00000330374 CLUAP1Q96AJ1 413 aa10.12□□□□□ -0.79
VMA21-201ENST00000330374 ADGRL2O95490 1459 aa10.12□□□□□ -0.79
VMA21-201ENST00000330374 RRAGDQ9NQL2 400 aaPredicted RBP10.12□□□□□ -0.79
VMA21-201ENST00000330374 RSPH6AQ9H0K4 717 aa10.11□□□□□ -0.79
VMA21-201ENST00000330374 E9PCH4 1651 aa10.11□□□□□ -0.79
VMA21-201ENST00000330374 COL17A1Q9UMD9 1497 aaPredicted RBP10.11□□□□□ -0.79
VMA21-201ENST00000330374 NAP1L5Q96NT1 182 aaPredicted RBP10.11□□□□□ -0.79
VMA21-201ENST00000330374 USP19O94966 1318 aa10.1□□□□□ -0.79
VMA21-201ENST00000330374 JPH4Q96JJ6 628 aa10.1□□□□□ -0.79
VMA21-201ENST00000330374 TNNQ9UQP3 1299 aa10.1□□□□□ -0.79
VMA21-201ENST00000330374 UPF2Q9HAU5 1272 aaKnown RBP10.09□□□□□ -0.79
VMA21-201ENST00000330374 ITSN2Q9NZM3 1697 aa10.09□□□□□ -0.79
VMA21-201ENST00000330374 A2MP01023 1474 aa10.08□□□□□ -0.8
VMA21-201ENST00000330374 CENPJQ9HC77 1338 aaPredicted RBP10.08□□□□□ -0.8
VMA21-201ENST00000330374 KDM5DQ9BY66 1539 aa10.08□□□□□ -0.8
VMA21-201ENST00000330374 PANK2Q9BZ23 570 aa10.08□□□□□ -0.8
VMA21-201ENST00000330374 CEP170Q5SW79 1584 aa10.08□□□□□ -0.8
VMA21-201ENST00000330374 ZNF521Q96K83 1311 aa10.08□□□□□ -0.8
VMA21-201ENST00000330374 MAGI2Q86UL8 1455 aa10.08□□□□□ -0.8
VMA21-201ENST00000330374 PLEKHH2Q8IVE3 1493 aa10.08□□□□□ -0.8
VMA21-201ENST00000330374 FAM135AQ9P2D6 1515 aa10.08□□□□□ -0.8
VMA21-201ENST00000330374 PDIA4P13667 645 aaKnown RBP10.07□□□□□ -0.8
VMA21-201ENST00000330374 E9PSI1 815 aa10.07□□□□□ -0.8
VMA21-201ENST00000330374 TBC1D2Q9BYX2 928 aa10.06□□□□□ -0.8
VMA21-201ENST00000330374 MFAP1P55081 439 aaKnown RBP10.06□□□□□ -0.8
VMA21-201ENST00000330374 L1TD1Q5T7N2 865 aaKnown RBP10.06□□□□□ -0.8
VMA21-201ENST00000330374 TRPM1Q7Z4N2 1603 aa10.06□□□□□ -0.8
VMA21-201ENST00000330374 CROCC2H7BZ55 1655 aa10.06□□□□□ -0.8
VMA21-201ENST00000330374 GOLGA6L3A6NEY3 463 aa10.05□□□□□ -0.8
VMA21-201ENST00000330374 IFNLR1Q8IU57 520 aaPredicted RBP10.05□□□□□ -0.8
VMA21-201ENST00000330374 PDZRN3Q9UPQ7 1066 aa10.05□□□□□ -0.8
VMA21-201ENST00000330374 PCDHB15Q9Y5E8 787 aa10.05□□□□□ -0.8
VMA21-201ENST00000330374 CGNL1Q0VF96 1302 aa10.05□□□□□ -0.8
VMA21-201ENST00000330374 NKTRP30414 1462 aaKnown RBP10.05□□□□□ -0.8
VMA21-201ENST00000330374 GRIN2AQ12879 1464 aa10.05□□□□□ -0.8
VMA21-201ENST00000330374 PLA2R1Q13018 1463 aa10.05□□□□□ -0.8
VMA21-201ENST00000330374 MAPK8IP3Q9UPT6 1336 aa10.05□□□□□ -0.8
VMA21-201ENST00000330374 MAGI1Q96QZ7 1491 aaPredicted RBP10.04□□□□□ -0.8
VMA21-201ENST00000330374 XRCC6P12956 609 aaKnown RBP eCLIP10.04□□□□□ -0.8
VMA21-201ENST00000330374 EIF3AQ14152 1382 aaKnown RBP10.04□□□□□ -0.8
VMA21-201ENST00000330374 RLBP1P12271 317 aa10.04□□□□□ -0.8
VMA21-201ENST00000330374 TRHP20396 242 aaPredicted RBP10.04□□□□□ -0.8
VMA21-201ENST00000330374 PNNQ9H307 717 aaKnown RBP10.04□□□□□ -0.8
VMA21-201ENST00000330374 CARMIL2Q6F5E8 1435 aa10.03□□□□□ -0.8
VMA21-201ENST00000330374 GPRASP1Q5JY77 1395 aa10.03□□□□□ -0.8
VMA21-201ENST00000330374 CDC42BPAQ5VT25 1732 aa10.03□□□□□ -0.8
VMA21-201ENST00000330374 WWC1Q8IX03 1113 aa10.02□□□□□ -0.8
VMA21-201ENST00000330374 PTPRGP23470 1445 aa10.02□□□□□ -0.81
VMA21-201ENST00000330374 SLC4A2P04920 1241 aa10.02□□□□□ -0.81
VMA21-201ENST00000330374 CDCA8Q53HL2 280 aa10.02□□□□□ -0.81
VMA21-201ENST00000330374 TRMT2AQ8IZ69 625 aaKnown RBP10.02□□□□□ -0.81
VMA21-201ENST00000330374 ATP10BO94823 1461 aa10.02□□□□□ -0.81
VMA21-201ENST00000330374 WDR7Q9Y4E6 1490 aa10.02□□□□□ -0.81
VMA21-201ENST00000330374 PDE3AQ14432 1141 aa10.01□□□□□ -0.81
VMA21-201ENST00000330374 ANTXR1Q9H6X2 564 aa10.01□□□□□ -0.81
VMA21-201ENST00000330374 MCM4P33991 863 aa10.01□□□□□ -0.81
VMA21-201ENST00000330374 TBC1D32Q96NH3 1257 aa10.01□□□□□ -0.81
VMA21-201ENST00000330374 KRI1Q8N9T8 703 aaKnown RBP10.01□□□□□ -0.81
VMA21-201ENST00000330374 PRDM15P57071 1507 aaPredicted RBP10□□□□□ -0.81
VMA21-201ENST00000330374 SHANK2Q9UPX8 1470 aa10□□□□□ -0.81
VMA21-201ENST00000330374 INSRP06213 1382 aa10□□□□□ -0.81
VMA21-201ENST00000330374 EIF4G3O43432 1585 aaKnown RBP10□□□□□ -0.81
VMA21-201ENST00000330374 TRAK2O60296 914 aa10□□□□□ -0.81
VMA21-201ENST00000330374 PMFBP1Q8TBY8 1022 aa10□□□□□ -0.81
VMA21-201ENST00000330374 CCDC141Q6ZP82 1450 aa10□□□□□ -0.81
VMA21-201ENST00000330374 FTSJ3Q8IY81 847 aaKnown RBP9.99□□□□□ -0.81
VMA21-201ENST00000330374 ABCC10Q5T3U5 1492 aa9.99□□□□□ -0.81
VMA21-201ENST00000330374 MRC2Q9UBG0 1479 aa9.99□□□□□ -0.81
VMA21-201ENST00000330374 RARSP54136 660 aaKnown RBP9.99□□□□□ -0.81
VMA21-201ENST00000330374 CFAP70Q5T0N1 1121 aa9.99□□□□□ -0.81
VMA21-201ENST00000330374 TCP11L2Q8N4U5 519 aa9.99□□□□□ -0.81
VMA21-201ENST00000330374 CARD14Q9BXL6 1004 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms