RNA–Protein interactions for RNA: ENST00000312196.8

MSL3-201, Transcript of MSL complex subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSL3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSL3-201ENST00000312196 PIP4K2BP78356 416 aa12.93□□□□□ -0.34
MSL3-201ENST00000312196 ZFYVE9O95405 1425 aa12.93□□□□□ -0.34
MSL3-201ENST00000312196 ACIN1Q9UKV3 1341 aaKnown RBP12.92□□□□□ -0.34
MSL3-201ENST00000312196 CHIC2Q9UKJ5 165 aa12.92□□□□□ -0.34
MSL3-201ENST00000312196 IDI1Q13907 227 aa12.91□□□□□ -0.34
MSL3-201ENST00000312196 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.91□□□□□ -0.34
MSL3-201ENST00000312196 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.9□□□□□ -0.34
MSL3-201ENST00000312196 CFAP65Q6ZU64 1925 aaKnown RBP12.9□□□□□ -0.34
MSL3-201ENST00000312196 TBX22Q9Y458 520 aa12.89□□□□□ -0.35
MSL3-201ENST00000312196 SCAF1Q9H7N4 1312 aaKnown RBP12.89□□□□□ -0.35
MSL3-201ENST00000312196 PHF23Q9BUL5 403 aaPredicted RBP12.88□□□□□ -0.35
MSL3-201ENST00000312196 STAG3Q9UJ98 1225 aa12.88□□□□□ -0.35
MSL3-201ENST00000312196 TMEM94Q12767 1356 aa12.88□□□□□ -0.35
MSL3-201ENST00000312196 SPHKAPQ2M3C7 1700 aa12.87□□□□□ -0.35
MSL3-201ENST00000312196 CHD2O14647 1828 aaKnown RBP12.86□□□□□ -0.35
MSL3-201ENST00000312196 RIMS2Q9UQ26 1411 aa12.86□□□□□ -0.35
MSL3-201ENST00000312196 HFM1A2PYH4 1435 aa12.85□□□□□ -0.35
MSL3-201ENST00000312196 MSH6P52701 1360 aa12.85□□□□□ -0.35
MSL3-201ENST00000312196 NAIPQ13075 1403 aa12.85□□□□□ -0.35
MSL3-201ENST00000312196 TRPM2O94759 1503 aa12.84□□□□□ -0.35
MSL3-201ENST00000312196 NUP155O75694 1391 aa12.84□□□□□ -0.35
MSL3-201ENST00000312196 MYO5BQ9ULV0 1848 aa12.84□□□□□ -0.35
MSL3-201ENST00000312196 PROSER2Q86WR7 435 aaPredicted RBP12.84□□□□□ -0.35
MSL3-201ENST00000312196 DCCP43146 1447 aa12.84□□□□□ -0.35
MSL3-201ENST00000312196 SETBP1Q9Y6X0 1596 aa12.83□□□□□ -0.36
MSL3-201ENST00000312196 ROBO1Q9Y6N7 1651 aa12.82□□□□□ -0.36
MSL3-201ENST00000312196 JCADQ9P266 1359 aa12.82□□□□□ -0.36
MSL3-201ENST00000312196 AHDC1Q5TGY3 1603 aaPredicted RBP12.82□□□□□ -0.36
MSL3-201ENST00000312196 SPATA31A6Q5VVP1 1343 aa12.8□□□□□ -0.36
MSL3-201ENST00000312196 ADAMTS13Q76LX8 1427 aa12.8□□□□□ -0.36
MSL3-201ENST00000312196 PRAG1Q86YV5 1406 aa12.8□□□□□ -0.36
MSL3-201ENST00000312196 RGS17Q9UGC6 210 aaPredicted RBP12.79□□□□□ -0.36
MSL3-201ENST00000312196 SLAIN2Q9P270 581 aa12.78□□□□□ -0.36
MSL3-201ENST00000312196 COL16A1Q07092 1604 aaPredicted RBP12.77□□□□□ -0.37
MSL3-201ENST00000312196 CADPS2Q86UW7 1296 aa12.77□□□□□ -0.37
MSL3-201ENST00000312196 KIF1BO60333 1816 aa12.77□□□□□ -0.37
MSL3-201ENST00000312196 SHPRHQ149N8 1683 aa12.77□□□□□ -0.37
MSL3-201ENST00000312196 RPGRIP1LQ68CZ1 1315 aa12.76□□□□□ -0.37
MSL3-201ENST00000312196 PHLPP1O60346 1717 aa12.76□□□□□ -0.37
MSL3-201ENST00000312196 XRN1Q8IZH2 1706 aaKnown RBP12.76□□□□□ -0.37
MSL3-201ENST00000312196 CLTCL1P53675 1640 aa12.76□□□□□ -0.37
MSL3-201ENST00000312196 NRXN3Q9Y4C0 1643 aa12.76□□□□□ -0.37
MSL3-201ENST00000312196 C19orf44Q9H6X5 657 aa12.76□□□□□ -0.37
MSL3-201ENST00000312196 CDK12Q9NYV4 1490 aaPredicted RBP12.76□□□□□ -0.37
MSL3-201ENST00000312196 NEXMIFQ5QGS0 1516 aa12.75□□□□□ -0.37
MSL3-201ENST00000312196 SLC26A8Q96RN1 970 aa12.75□□□□□ -0.37
MSL3-201ENST00000312196 PPP1R15AO75807 674 aaPredicted RBP12.73□□□□□ -0.37
MSL3-201ENST00000312196 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.72□□□□□ -0.37
MSL3-201ENST00000312196 SETD5Q9C0A6 1442 aa12.72□□□□□ -0.37
MSL3-201ENST00000312196 LAMC1P11047 1609 aa12.71□□□□□ -0.37
MSL3-201ENST00000312196 ZNF772Q68DY9 489 aaPredicted RBP12.71□□□□□ -0.37
MSL3-201ENST00000312196 SETD1AO15047 1707 aaKnown RBP12.7□□□□□ -0.38
MSL3-201ENST00000312196 POTEAQ6S8J7 498 aa12.7□□□□□ -0.38
MSL3-201ENST00000312196 PPLO60437 1756 aa12.69□□□□□ -0.38
MSL3-201ENST00000312196 ATF3P18847 181 aa12.69□□□□□ -0.38
MSL3-201ENST00000312196 NHSL1Q5SYE7 1610 aa12.68□□□□□ -0.38
MSL3-201ENST00000312196 PTPRUQ92729 1446 aa12.68□□□□□ -0.38
MSL3-201ENST00000312196 BCANQ96GW7 911 aa12.68□□□□□ -0.38
MSL3-201ENST00000312196 PTCH1Q13635 1447 aa12.67□□□□□ -0.38
MSL3-201ENST00000312196 HRCP23327 699 aa12.67□□□□□ -0.38
MSL3-201ENST00000312196 ADGRL3Q9HAR2 1447 aa12.66□□□□□ -0.38
MSL3-201ENST00000312196 IFT172Q9UG01 1749 aa12.66□□□□□ -0.38
MSL3-201ENST00000312196 ITGAEP38570 1179 aa12.66□□□□□ -0.38
MSL3-201ENST00000312196 AMOTL2Q9Y2J4 779 aa12.66□□□□□ -0.38
MSL3-201ENST00000312196 VGFO15240 615 aaPredicted RBP12.66□□□□□ -0.38
MSL3-201ENST00000312196 ASXL1Q8IXJ9 1541 aa12.65□□□□□ -0.38
MSL3-201ENST00000312196 MST1RQ04912 1400 aa12.65□□□□□ -0.38
MSL3-201ENST00000312196 CHGAP10645 457 aaKnown RBP12.65□□□□□ -0.39
MSL3-201ENST00000312196 SPATA31E1Q6ZUB1 1445 aa12.64□□□□□ -0.39
MSL3-201ENST00000312196 LRP6O75581 1613 aa12.64□□□□□ -0.39
MSL3-201ENST00000312196 ANKRD30BQ9BXX2 1392 aa12.63□□□□□ -0.39
MSL3-201ENST00000312196 BRINP3Q76B58 766 aa12.63□□□□□ -0.39
MSL3-201ENST00000312196 KNDC1Q76NI1 1749 aa12.63□□□□□ -0.39
MSL3-201ENST00000312196 SLC4A1APQ9BWU0 796 aaKnown RBP12.62□□□□□ -0.39
MSL3-201ENST00000312196 LRRC59Q96AG4 307 aaKnown RBP12.62□□□□□ -0.39
MSL3-201ENST00000312196 TECPR2O15040 1411 aa12.61□□□□□ -0.39
MSL3-201ENST00000312196 PPARGC1BQ86YN6 1023 aaKnown RBP12.61□□□□□ -0.39
MSL3-201ENST00000312196 METP08581 1390 aa12.61□□□□□ -0.39
MSL3-201ENST00000312196 SIRT1Q96EB6 747 aa12.6□□□□□ -0.39
MSL3-201ENST00000312196 NRXN1Q9ULB1 1477 aa12.6□□□□□ -0.39
MSL3-201ENST00000312196 C14orf37Q86TY3 774 aa12.6□□□□□ -0.39
MSL3-201ENST00000312196 TRIM52Q96A61 297 aa12.6□□□□□ -0.39
MSL3-201ENST00000312196 CCDC144AA2RUR9 1427 aa12.6□□□□□ -0.39
MSL3-201ENST00000312196 MYOM2P54296 1465 aa12.6□□□□□ -0.39
MSL3-201ENST00000312196 ZNF326Q5BKZ1 582 aaKnown RBP12.59□□□□□ -0.39
MSL3-201ENST00000312196 MPHOSPH9Q99550 1183 aa12.59□□□□□ -0.39
MSL3-201ENST00000312196 STAC3Q96MF2 364 aa12.59□□□□□ -0.39
MSL3-201ENST00000312196 NALCNQ8IZF0 1738 aa12.58□□□□□ -0.4
MSL3-201ENST00000312196 COL22A1Q8NFW1 1626 aaPredicted RBP12.58□□□□□ -0.4
MSL3-201ENST00000312196 PNPLA6Q8IY17 1366 aa12.58□□□□□ -0.4
MSL3-201ENST00000312196 CDC42BPGQ6DT37 1551 aa12.57□□□□□ -0.4
MSL3-201ENST00000312196 MEX3CQ5U5Q3 659 aaKnown RBP12.57□□□□□ -0.4
MSL3-201ENST00000312196 C1orf167Q5SNV9 1468 aa12.57□□□□□ -0.4
MSL3-201ENST00000312196 RXRBP28702 533 aa12.56□□□□□ -0.4
MSL3-201ENST00000312196 SOS2Q07890 1332 aaPredicted RBP12.56□□□□□ -0.4
MSL3-201ENST00000312196 RBM33Q96EV2 1170 aaKnown RBP12.56□□□□□ -0.4
MSL3-201ENST00000312196 LRPPRCP42704 1394 aaKnown RBP12.56□□□□□ -0.4
MSL3-201ENST00000312196 UPF1Q92900 1129 aaKnown RBP eCLIP12.55□□□□□ -0.4
MSL3-201ENST00000312196 PIK3C2GO75747 1445 aa12.55□□□□□ -0.4
MSL3-201ENST00000312196 ABCC11Q96J66 1382 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms