RNA–Protein interactions for RNA: ENST00000303450.4

HOXC9-201, Transcript of homeobox C9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC9, Length 1,516 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-201ENST00000303450 LTKP29376 864 aa35.58■■■■□ 3.29
HOXC9-201ENST00000303450 CCER1Q8TC90 406 aaPredicted RBP35.58■■■■□ 3.29
HOXC9-201ENST00000303450 ZFYVE9O95405 1425 aa35.58■■■■□ 3.29
HOXC9-201ENST00000303450 STRCQ7RTU9 1775 aa35.58■■■■□ 3.29
HOXC9-201ENST00000303450 ABCF1Q8NE71 845 aaKnown RBP eCLIP35.57■■■■□ 3.29
HOXC9-201ENST00000303450 SCAF11Q99590 1463 aaKnown RBP35.57■■■■□ 3.28
HOXC9-201ENST00000303450 POLR1AO95602 1720 aaPredicted RBP35.57■■■■□ 3.28
HOXC9-201ENST00000303450 RPGRIP1LQ68CZ1 1315 aa35.56■■■■□ 3.28
HOXC9-201ENST00000303450 PPP1R15AO75807 674 aaPredicted RBP35.56■■■■□ 3.28
HOXC9-201ENST00000303450 NEUROD1Q13562 356 aa35.56■■■■□ 3.28
HOXC9-201ENST00000303450 NUTM2DQ5VT03 806 aaPredicted RBP35.55■■■■□ 3.28
HOXC9-201ENST00000303450 NEXMIFQ5QGS0 1516 aa35.52■■■■□ 3.28
HOXC9-201ENST00000303450 CLSPNQ9HAW4 1339 aa35.5■■■■□ 3.27
HOXC9-201ENST00000303450 DMRT2Q9Y5R5 561 aa35.48■■■■□ 3.27
HOXC9-201ENST00000303450 PPLO60437 1756 aa35.47■■■■□ 3.27
HOXC9-201ENST00000303450 NPHP4O75161 1426 aaPredicted RBP35.47■■■■□ 3.27
HOXC9-201ENST00000303450 MED14O60244 1454 aa35.46■■■■□ 3.27
HOXC9-201ENST00000303450 VGFO15240 615 aaPredicted RBP35.46■■■■□ 3.27
HOXC9-201ENST00000303450 BCANQ96GW7 911 aa35.45■■■■□ 3.27
HOXC9-201ENST00000303450 PLEKHG1Q9ULL1 1385 aa35.42■■■■□ 3.26
HOXC9-201ENST00000303450 IQGAP1P46940 1657 aa35.42■■■■□ 3.26
HOXC9-201ENST00000303450 SENP3Q9H4L4 574 aaPredicted RBP35.42■■■■□ 3.26
HOXC9-201ENST00000303450 IFT172Q9UG01 1749 aa35.42■■■■□ 3.26
HOXC9-201ENST00000303450 DCAF11Q8TEB1 546 aa35.4■■■■□ 3.26
HOXC9-201ENST00000303450 KDM2AQ9Y2K7 1162 aa35.37■■■■□ 3.25
HOXC9-201ENST00000303450 ADGRF5Q8IZF2 1346 aa35.34■■■■□ 3.25
HOXC9-201ENST00000303450 L3MBTL2Q969R5 705 aa35.33■■■■□ 3.25
HOXC9-201ENST00000303450 STAC3Q96MF2 364 aa35.33■■■■□ 3.25
HOXC9-201ENST00000303450 TONSLQ96HA7 1378 aa35.33■■■■□ 3.25
HOXC9-201ENST00000303450 MYOM2P54296 1465 aa35.33■■■■□ 3.25
HOXC9-201ENST00000303450 SLC26A8Q96RN1 970 aa35.32■■■■□ 3.24
HOXC9-201ENST00000303450 SETBP1Q9Y6X0 1596 aa35.28■■■■□ 3.24
HOXC9-201ENST00000303450 ADAMTS13Q76LX8 1427 aa35.26■■■■□ 3.23
HOXC9-201ENST00000303450 NRXN3Q9Y4C0 1643 aa35.25■■■■□ 3.23
HOXC9-201ENST00000303450 NRXN1Q9ULB1 1477 aa35.25■■■■□ 3.23
HOXC9-201ENST00000303450 TBX22Q9Y458 520 aa35.24■■■■□ 3.23
HOXC9-201ENST00000303450 PIK3C2GO75747 1445 aa35.23■■■■□ 3.23
HOXC9-201ENST00000303450 DIP2AQ14689 1571 aa35.22■■■■□ 3.23
HOXC9-201ENST00000303450 ALKQ9UM73 1620 aa35.18■■■■□ 3.22
HOXC9-201ENST00000303450 TIMELESSQ9UNS1 1208 aa35.17■■■■□ 3.22
HOXC9-201ENST00000303450 C14orf93Q9H972 538 aaKnown RBP35.14■■■■□ 3.22
HOXC9-201ENST00000303450 ZNF335Q9H4Z2 1342 aaPredicted RBP35.13■■■■□ 3.21
HOXC9-201ENST00000303450 CFAP70Q5T0N1 1121 aa35.13■■■■□ 3.21
HOXC9-201ENST00000303450 PRAG1Q86YV5 1406 aa35.13■■■■□ 3.21
HOXC9-201ENST00000303450 METP08581 1390 aa35.11■■■■□ 3.21
HOXC9-201ENST00000303450 PIK3R4Q99570 1358 aa35.11■■■■□ 3.21
HOXC9-201ENST00000303450 SETD1AO15047 1707 aaKnown RBP35.11■■■■□ 3.21
HOXC9-201ENST00000303450 LAMC1P11047 1609 aa35.1■■■■□ 3.21
HOXC9-201ENST00000303450 KCNA6P17658 529 aa35.07■■■■□ 3.21
HOXC9-201ENST00000303450 CHD2O14647 1828 aaKnown RBP35.06■■■■□ 3.2
HOXC9-201ENST00000303450 TMEM132EQ6IEE7 984 aa35.04■■■■□ 3.2
HOXC9-201ENST00000303450 AMOTL2Q9Y2J4 779 aa35.02■■■■□ 3.2
HOXC9-201ENST00000303450 PTPRUQ92729 1446 aa35.02■■■■□ 3.2
HOXC9-201ENST00000303450 KIAA1210Q9ULL0 1709 aa35.01■■■■□ 3.19
HOXC9-201ENST00000303450 STRCP1A6NGW2 1772 aa35.01■■■■□ 3.19
HOXC9-201ENST00000303450 NBPF8Q3BBV2 869 aa35.01■■■■□ 3.19
HOXC9-201ENST00000303450 NWD1Q149M9 1564 aa35■■■■□ 3.19
HOXC9-201ENST00000303450 ASXL1Q8IXJ9 1541 aa34.99■■■■□ 3.19
HOXC9-201ENST00000303450 LTBP4Q8N2S1 1624 aa34.97■■■■□ 3.19
HOXC9-201ENST00000303450 CPS1P31327 1500 aa34.96■■■■□ 3.19
HOXC9-201ENST00000303450 STK26Q9P289 416 aa34.96■■■■□ 3.19
HOXC9-201ENST00000303450 NBPF1Q3BBV0 1214 aa34.95■■■■□ 3.19
HOXC9-201ENST00000303450 TRPM1Q7Z4N2 1603 aa34.94■■■■□ 3.18
HOXC9-201ENST00000303450 ADGRB1O14514 1584 aa34.94■■■■□ 3.18
HOXC9-201ENST00000303450 YTHDC2Q9H6S0 1430 aaKnown RBP34.94■■■■□ 3.18
HOXC9-201ENST00000303450 XRN1Q8IZH2 1706 aaKnown RBP34.94■■■■□ 3.18
HOXC9-201ENST00000303450 NKTRP30414 1462 aaKnown RBP34.94■■■■□ 3.18
HOXC9-201ENST00000303450 LRPPRCP42704 1394 aaKnown RBP34.93■■■■□ 3.18
HOXC9-201ENST00000303450 PROSER2Q86WR7 435 aaPredicted RBP34.91■■■■□ 3.18
HOXC9-201ENST00000303450 ROCK2O75116 1388 aaKnown RBP34.89■■■■□ 3.18
HOXC9-201ENST00000303450 ABCC11Q96J66 1382 aa34.89■■■■□ 3.18
HOXC9-201ENST00000303450 LRRC7Q96NW7 1537 aa34.87■■■■□ 3.17
HOXC9-201ENST00000303450 RALGAPBQ86X10 1494 aa34.86■■■■□ 3.17
HOXC9-201ENST00000303450 TECPR2O15040 1411 aa34.84■■■■□ 3.17
HOXC9-201ENST00000303450 PTCH1Q13635 1447 aa34.84■■■■□ 3.17
HOXC9-201ENST00000303450 KNDC1Q76NI1 1749 aa34.84■■■■□ 3.17
HOXC9-201ENST00000303450 TRAK1Q9UPV9 953 aa34.84■■■■□ 3.17
HOXC9-201ENST00000303450 ROBO2Q9HCK4 1378 aa34.83■■■■□ 3.17
HOXC9-201ENST00000303450 RBM33Q96EV2 1170 aaKnown RBP34.83■■■■□ 3.17
HOXC9-201ENST00000303450 TMEM94Q12767 1356 aa34.82■■■■□ 3.17
HOXC9-201ENST00000303450 CERKQ8TCT0 537 aa34.79■■■■□ 3.16
HOXC9-201ENST00000303450 CARD11Q9BXL7 1154 aa34.79■■■■□ 3.16
HOXC9-201ENST00000303450 GPRASP1Q5JY77 1395 aa34.79■■■■□ 3.16
HOXC9-201ENST00000303450 SIRT1Q96EB6 747 aa34.78■■■■□ 3.16
HOXC9-201ENST00000303450 DLC1Q96QB1 1528 aa34.77■■■■□ 3.16
HOXC9-201ENST00000303450 C14orf37Q86TY3 774 aa34.76■■■■□ 3.16
HOXC9-201ENST00000303450 WAPLQ7Z5K2 1190 aa34.76■■■■□ 3.15
HOXC9-201ENST00000303450 FAM135BQ49AJ0 1406 aa34.75■■■■□ 3.15
HOXC9-201ENST00000303450 POGKQ9P215 609 aa34.75■■■■□ 3.15
HOXC9-201ENST00000303450 XIRP1Q702N8 1843 aaKnown RBP34.74■■■■□ 3.15
HOXC9-201ENST00000303450 PRAM1Q96QH2 718 aa34.74■■■■□ 3.15
HOXC9-201ENST00000303450 NCOA3Q9Y6Q9 1424 aa34.73■■■■□ 3.15
HOXC9-201ENST00000303450 PLEKHH1Q9ULM0 1364 aa34.71■■■■□ 3.15
HOXC9-201ENST00000303450 ARHGEF28Q8N1W1 1705 aaKnown RBP34.7■■■■□ 3.15
HOXC9-201ENST00000303450 IQSEC2Q5JU85 1478 aa34.69■■■■□ 3.14
HOXC9-201ENST00000303450 SAFB2Q14151 953 aaKnown RBP eCLIP34.69■■■■□ 3.14
HOXC9-201ENST00000303450 MSH6P52701 1360 aa34.67■■■■□ 3.14
HOXC9-201ENST00000303450 C19orf44Q9H6X5 657 aa34.65■■■■□ 3.14
HOXC9-201ENST00000303450 EIF3AQ14152 1382 aaKnown RBP34.65■■■■□ 3.14
HOXC9-201ENST00000303450 ADGRL3Q9HAR2 1447 aa34.64■■■■□ 3.14
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms