RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 NUTM2DQ5VT03 806 aaPredicted RBP19.78■□□□□ 0.76
VPS28-201ENST00000292510 IQGAP1P46940 1657 aa19.78■□□□□ 0.76
VPS28-201ENST00000292510 ZNF326Q5BKZ1 582 aaKnown RBP19.75■□□□□ 0.75
VPS28-201ENST00000292510 PPP1R15AO75807 674 aaPredicted RBP19.74■□□□□ 0.75
VPS28-201ENST00000292510 LTBP4Q8N2S1 1624 aa19.73■□□□□ 0.75
VPS28-201ENST00000292510 CCDC144AA2RUR9 1427 aa19.73■□□□□ 0.75
VPS28-201ENST00000292510 KIF1BO60333 1816 aa19.72■□□□□ 0.75
VPS28-201ENST00000292510 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.71■□□□□ 0.75
VPS28-201ENST00000292510 BCANQ96GW7 911 aa19.71■□□□□ 0.75
VPS28-201ENST00000292510 HDGFP51858 240 aaKnown RBP19.7■□□□□ 0.74
VPS28-201ENST00000292510 CERKQ8TCT0 537 aa19.7■□□□□ 0.74
VPS28-201ENST00000292510 SLC26A8Q96RN1 970 aa19.7■□□□□ 0.74
VPS28-201ENST00000292510 PLEKHG1Q9ULL1 1385 aa19.7■□□□□ 0.74
VPS28-201ENST00000292510 NEXMIFQ5QGS0 1516 aa19.67■□□□□ 0.74
VPS28-201ENST00000292510 ANKRD30BQ9BXX2 1392 aa19.67■□□□□ 0.74
VPS28-201ENST00000292510 RGL3Q3MIN7 710 aa19.66■□□□□ 0.74
VPS28-201ENST00000292510 SPATA31E1Q6ZUB1 1445 aa19.65■□□□□ 0.74
VPS28-201ENST00000292510 STRCP1A6NGW2 1772 aa19.63■□□□□ 0.73
VPS28-201ENST00000292510 ADAMTS13Q76LX8 1427 aa19.63■□□□□ 0.73
VPS28-201ENST00000292510 RPGRIP1LQ68CZ1 1315 aa19.6■□□□□ 0.73
VPS28-201ENST00000292510 CPS1P31327 1500 aa19.6■□□□□ 0.73
VPS28-201ENST00000292510 NRXN3Q9Y4C0 1643 aa19.58■□□□□ 0.73
VPS28-201ENST00000292510 PPLO60437 1756 aa19.58■□□□□ 0.73
VPS28-201ENST00000292510 VGFO15240 615 aaPredicted RBP19.58■□□□□ 0.72
VPS28-201ENST00000292510 TBX22Q9Y458 520 aa19.58■□□□□ 0.72
VPS28-201ENST00000292510 SETBP1Q9Y6X0 1596 aa19.57■□□□□ 0.72
VPS28-201ENST00000292510 KCNA6P17658 529 aa19.56■□□□□ 0.72
VPS28-201ENST00000292510 DIP2AQ14689 1571 aa19.56■□□□□ 0.72
VPS28-201ENST00000292510 LRRC7Q96NW7 1537 aa19.56■□□□□ 0.72
VPS28-201ENST00000292510 ADGRF5Q8IZF2 1346 aa19.55■□□□□ 0.72
VPS28-201ENST00000292510 PCGF6Q9BYE7 350 aa19.55■□□□□ 0.72
VPS28-201ENST00000292510 DHX57Q6P158 1386 aaKnown RBP19.55■□□□□ 0.72
VPS28-201ENST00000292510 ILDR1Q86SU0 546 aaPredicted RBP19.54■□□□□ 0.72
VPS28-201ENST00000292510 FBXO41Q8TF61 875 aa19.54■□□□□ 0.72
VPS28-201ENST00000292510 IFT172Q9UG01 1749 aa19.54■□□□□ 0.72
VPS28-201ENST00000292510 IQSEC2Q5JU85 1478 aa19.53■□□□□ 0.72
VPS28-201ENST00000292510 NWD1Q149M9 1564 aa19.53■□□□□ 0.72
VPS28-201ENST00000292510 RBM33Q96EV2 1170 aaKnown RBP19.52■□□□□ 0.72
VPS28-201ENST00000292510 METP08581 1390 aa19.52■□□□□ 0.72
VPS28-201ENST00000292510 PTPRUQ92729 1446 aa19.51■□□□□ 0.71
VPS28-201ENST00000292510 CHD2O14647 1828 aaKnown RBP19.51■□□□□ 0.71
VPS28-201ENST00000292510 PIK3R4Q99570 1358 aa19.49■□□□□ 0.71
VPS28-201ENST00000292510 PROSER2Q86WR7 435 aaPredicted RBP19.49■□□□□ 0.71
VPS28-201ENST00000292510 AMOTL2Q9Y2J4 779 aa19.49■□□□□ 0.71
VPS28-201ENST00000292510 NKTRP30414 1462 aaKnown RBP19.48■□□□□ 0.71
VPS28-201ENST00000292510 TMEM94Q12767 1356 aa19.48■□□□□ 0.71
VPS28-201ENST00000292510 ALKQ9UM73 1620 aa19.48■□□□□ 0.71
VPS28-201ENST00000292510 SIN3AQ96ST3 1273 aa19.48■□□□□ 0.71
VPS28-201ENST00000292510 SETD1AO15047 1707 aaKnown RBP19.46■□□□□ 0.71
VPS28-201ENST00000292510 PIK3C2GO75747 1445 aa19.46■□□□□ 0.71
VPS28-201ENST00000292510 UBAP1LF5GYI3 381 aa19.46■□□□□ 0.71
VPS28-201ENST00000292510 DCAF11Q8TEB1 546 aa19.46■□□□□ 0.71
VPS28-201ENST00000292510 KDM2AQ9Y2K7 1162 aa19.46■□□□□ 0.71
VPS28-201ENST00000292510 MYOM2P54296 1465 aa19.46■□□□□ 0.71
VPS28-201ENST00000292510 XIRP1Q702N8 1843 aaKnown RBP19.46■□□□□ 0.71
VPS28-201ENST00000292510 NRXN1Q9ULB1 1477 aa19.44■□□□□ 0.7
VPS28-201ENST00000292510 XRN1Q8IZH2 1706 aaKnown RBP19.43■□□□□ 0.7
VPS28-201ENST00000292510 NEUROD1Q13562 356 aa19.43■□□□□ 0.7
VPS28-201ENST00000292510 CFAP70Q5T0N1 1121 aa19.41■□□□□ 0.7
VPS28-201ENST00000292510 ASXL1Q8IXJ9 1541 aa19.41■□□□□ 0.7
VPS28-201ENST00000292510 TMEM132EQ6IEE7 984 aa19.4■□□□□ 0.7
VPS28-201ENST00000292510 C14orf93Q9H972 538 aaKnown RBP19.39■□□□□ 0.69
VPS28-201ENST00000292510 TOM1O60784 492 aa19.38■□□□□ 0.69
VPS28-201ENST00000292510 PIP4K2BP78356 416 aa19.38■□□□□ 0.69
VPS28-201ENST00000292510 ROBO2Q9HCK4 1378 aa19.37■□□□□ 0.69
VPS28-201ENST00000292510 SCAF1Q9H7N4 1312 aaKnown RBP19.37■□□□□ 0.69
VPS28-201ENST00000292510 C14orf37Q86TY3 774 aa19.37■□□□□ 0.69
VPS28-201ENST00000292510 STK26Q9P289 416 aa19.37■□□□□ 0.69
VPS28-201ENST00000292510 MSH6P52701 1360 aa19.35■□□□□ 0.69
VPS28-201ENST00000292510 L3MBTL2Q969R5 705 aa19.35■□□□□ 0.69
VPS28-201ENST00000292510 PTCH1Q13635 1447 aa19.34■□□□□ 0.69
VPS28-201ENST00000292510 STAC3Q96MF2 364 aa19.34■□□□□ 0.69
VPS28-201ENST00000292510 NCOA3Q9Y6Q9 1424 aa19.34■□□□□ 0.69
VPS28-201ENST00000292510 LRPPRCP42704 1394 aaKnown RBP19.33■□□□□ 0.69
VPS28-201ENST00000292510 LAMC1P11047 1609 aa19.33■□□□□ 0.69
VPS28-201ENST00000292510 YTHDC2Q9H6S0 1430 aaKnown RBP19.33■□□□□ 0.68
VPS28-201ENST00000292510 PRAG1Q86YV5 1406 aa19.32■□□□□ 0.68
VPS28-201ENST00000292510 C19orf44Q9H6X5 657 aa19.3■□□□□ 0.68
VPS28-201ENST00000292510 ADGRB1O14514 1584 aa19.3■□□□□ 0.68
VPS28-201ENST00000292510 ABCC11Q96J66 1382 aa19.3■□□□□ 0.68
VPS28-201ENST00000292510 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.29■□□□□ 0.68
VPS28-201ENST00000292510 TECPR2O15040 1411 aa19.29■□□□□ 0.68
VPS28-201ENST00000292510 WAPLQ7Z5K2 1190 aa19.29■□□□□ 0.68
VPS28-201ENST00000292510 PLEKHH1Q9ULM0 1364 aa19.29■□□□□ 0.68
VPS28-201ENST00000292510 ADGRL3Q9HAR2 1447 aa19.28■□□□□ 0.68
VPS28-201ENST00000292510 NALCNQ8IZF0 1738 aa19.28■□□□□ 0.68
VPS28-201ENST00000292510 ATF3P18847 181 aa19.27■□□□□ 0.68
VPS28-201ENST00000292510 KNDC1Q76NI1 1749 aa19.27■□□□□ 0.68
VPS28-201ENST00000292510 SLAIN2Q9P270 581 aa19.26■□□□□ 0.67
VPS28-201ENST00000292510 TONSLQ96HA7 1378 aa19.25■□□□□ 0.67
VPS28-201ENST00000292510 CADPS2Q86UW7 1296 aa19.25■□□□□ 0.67
VPS28-201ENST00000292510 HSPA1LP34931 641 aa19.24■□□□□ 0.67
VPS28-201ENST00000292510 NBPF1Q3BBV0 1214 aa19.24■□□□□ 0.67
VPS28-201ENST00000292510 TRAK1Q9UPV9 953 aa19.24■□□□□ 0.67
VPS28-201ENST00000292510 DCCP43146 1447 aa19.24■□□□□ 0.67
VPS28-201ENST00000292510 PRAM1Q96QH2 718 aa19.23■□□□□ 0.67
VPS28-201ENST00000292510 SAFB2Q14151 953 aaKnown RBP eCLIP19.22■□□□□ 0.67
VPS28-201ENST00000292510 FAM135BQ49AJ0 1406 aa19.22■□□□□ 0.67
VPS28-201ENST00000292510 SIRT1Q96EB6 747 aa19.21■□□□□ 0.67
VPS28-201ENST00000292510 ROBO1Q9Y6N7 1651 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms