RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 CCDC136Q96JN2 1154 aa24.52■■□□□ 1.52
SHKBP1-201ENST00000291842 AMER1Q5JTC6 1135 aaPredicted RBP24.51■■□□□ 1.51
SHKBP1-201ENST00000291842 EIF3AQ14152 1382 aaKnown RBP24.51■■□□□ 1.51
SHKBP1-201ENST00000291842 CFAP65Q6ZU64 1925 aaKnown RBP24.51■■□□□ 1.51
SHKBP1-201ENST00000291842 KIF1BO60333 1816 aa24.49■■□□□ 1.51
SHKBP1-201ENST00000291842 PPP2R1AP30153 589 aa24.49■■□□□ 1.51
SHKBP1-201ENST00000291842 RCAN3Q9UKA8 241 aa24.49■■□□□ 1.51
SHKBP1-201ENST00000291842 MAP3K4Q9Y6R4 1608 aa24.49■■□□□ 1.51
SHKBP1-201ENST00000291842 POGZQ7Z3K3 1410 aa24.49■■□□□ 1.51
SHKBP1-201ENST00000291842 ADAMTS8Q9UP79 889 aa24.49■■□□□ 1.51
SHKBP1-201ENST00000291842 MROH2AA6NES4 1674 aa24.48■■□□□ 1.51
SHKBP1-201ENST00000291842 ABCA6Q8N139 1617 aa24.48■■□□□ 1.51
SHKBP1-201ENST00000291842 RAPGEF3O95398 923 aa24.47■■□□□ 1.51
SHKBP1-201ENST00000291842 RRP1P56182 461 aaKnown RBP24.46■■□□□ 1.51
SHKBP1-201ENST00000291842 BLMP54132 1417 aaPredicted RBP24.46■■□□□ 1.51
SHKBP1-201ENST00000291842 ANP32EQ9BTT0 268 aa24.46■■□□□ 1.51
SHKBP1-201ENST00000291842 MYOM2P54296 1465 aa24.46■■□□□ 1.51
SHKBP1-201ENST00000291842 SYNMO15061 1565 aa24.45■■□□□ 1.51
SHKBP1-201ENST00000291842 MYT1Q01538 1121 aa24.45■■□□□ 1.51
SHKBP1-201ENST00000291842 PDE3BQ13370 1112 aa24.45■■□□□ 1.51
SHKBP1-201ENST00000291842 NOS1P29475 1434 aa24.44■■□□□ 1.5
SHKBP1-201ENST00000291842 KIAA1210Q9ULL0 1709 aa24.44■■□□□ 1.5
SHKBP1-201ENST00000291842 FRMPD1Q5SYB0 1578 aa24.44■■□□□ 1.5
SHKBP1-201ENST00000291842 NEURL4Q96JN8 1562 aa24.44■■□□□ 1.5
SHKBP1-201ENST00000291842 NPATQ14207 1427 aa24.43■■□□□ 1.5
SHKBP1-201ENST00000291842 LMTK2Q8IWU2 1503 aa24.43■■□□□ 1.5
SHKBP1-201ENST00000291842 MYOM1P52179 1685 aa24.42■■□□□ 1.5
SHKBP1-201ENST00000291842 MSH5O43196 834 aa24.42■■□□□ 1.5
SHKBP1-201ENST00000291842 MLH3Q9UHC1 1453 aa24.41■■□□□ 1.5
SHKBP1-201ENST00000291842 ASXL1Q8IXJ9 1541 aa24.41■■□□□ 1.5
SHKBP1-201ENST00000291842 WDR43Q15061 677 aaKnown RBP eCLIP24.4■■□□□ 1.5
SHKBP1-201ENST00000291842 EXOC6Q8TAG9 804 aa24.4■■□□□ 1.5
SHKBP1-201ENST00000291842 ERVK-7P63135 1459 aa24.4■■□□□ 1.5
SHKBP1-201ENST00000291842 IFT172Q9UG01 1749 aa24.4■■□□□ 1.5
SHKBP1-201ENST00000291842 HECW2Q9P2P5 1572 aa24.4■■□□□ 1.5
SHKBP1-201ENST00000291842 CFAP74Q9C0B2 1584 aa24.39■■□□□ 1.5
SHKBP1-201ENST00000291842 KDM5AP29375 1690 aaKnown RBP24.39■■□□□ 1.5
SHKBP1-201ENST00000291842 TRAK1Q9UPV9 953 aa24.39■■□□□ 1.49
SHKBP1-201ENST00000291842 NUTM2DQ5VT03 806 aaPredicted RBP24.38■■□□□ 1.49
SHKBP1-201ENST00000291842 ADGRB3O60242 1522 aa24.37■■□□□ 1.49
SHKBP1-201ENST00000291842 TMEM132EQ6IEE7 984 aa24.37■■□□□ 1.49
SHKBP1-201ENST00000291842 INSRP06213 1382 aa24.36■■□□□ 1.49
SHKBP1-201ENST00000291842 FANCIQ9NVI1 1328 aa24.36■■□□□ 1.49
SHKBP1-201ENST00000291842 PLIN1O60240 522 aa24.36■■□□□ 1.49
SHKBP1-201ENST00000291842 CARD14Q9BXL6 1004 aa24.36■■□□□ 1.49
SHKBP1-201ENST00000291842 NRXN1Q9ULB1 1477 aa24.35■■□□□ 1.49
SHKBP1-201ENST00000291842 ZMYM4Q5VZL5 1548 aa24.34■■□□□ 1.49
SHKBP1-201ENST00000291842 CENPJQ9HC77 1338 aaPredicted RBP24.33■■□□□ 1.48
SHKBP1-201ENST00000291842 SENP3Q9H4L4 574 aaPredicted RBP24.32■■□□□ 1.48
SHKBP1-201ENST00000291842 CCDC146Q8IYE0 955 aa24.31■■□□□ 1.48
SHKBP1-201ENST00000291842 ABCC3O15438 1527 aa24.31■■□□□ 1.48
SHKBP1-201ENST00000291842 PLEKHH1Q9ULM0 1364 aa24.31■■□□□ 1.48
SHKBP1-201ENST00000291842 C14orf93Q9H972 538 aaKnown RBP24.3■■□□□ 1.48
SHKBP1-201ENST00000291842 SLC24A1O60721 1099 aa24.29■■□□□ 1.48
SHKBP1-201ENST00000291842 PIK3C2GO75747 1445 aa24.29■■□□□ 1.48
SHKBP1-201ENST00000291842 NPC1L1Q9UHC9 1359 aa24.29■■□□□ 1.48
SHKBP1-201ENST00000291842 PPLO60437 1756 aa24.27■■□□□ 1.48
SHKBP1-201ENST00000291842 NEO1Q92859 1461 aa24.27■■□□□ 1.48
SHKBP1-201ENST00000291842 SLC12A5Q9H2X9 1139 aa24.25■■□□□ 1.47
SHKBP1-201ENST00000291842 SIGLEC1Q9BZZ2 1709 aa24.25■■□□□ 1.47
SHKBP1-201ENST00000291842 CYB5RLQ6IPT4 315 aa24.24■■□□□ 1.47
SHKBP1-201ENST00000291842 CAMSAP1Q5T5Y3 1602 aa24.24■■□□□ 1.47
SHKBP1-201ENST00000291842 SETBP1Q9Y6X0 1596 aa24.23■■□□□ 1.47
SHKBP1-201ENST00000291842 MYO3AQ8NEV4 1616 aa24.23■■□□□ 1.47
SHKBP1-201ENST00000291842 DIP2CQ9Y2E4 1556 aa24.23■■□□□ 1.47
SHKBP1-201ENST00000291842 SBNO2Q9Y2G9 1366 aa24.23■■□□□ 1.47
SHKBP1-201ENST00000291842 TNNT2P45379 298 aaPredicted RBP24.22■■□□□ 1.47
SHKBP1-201ENST00000291842 YEATS2Q9ULM3 1422 aa24.22■■□□□ 1.47
SHKBP1-201ENST00000291842 RPGRIP1LQ68CZ1 1315 aa24.22■■□□□ 1.47
SHKBP1-201ENST00000291842 DUSP27Q5VZP5 1158 aa24.22■■□□□ 1.47
SHKBP1-201ENST00000291842 ADGRB1O14514 1584 aa24.22■■□□□ 1.47
SHKBP1-201ENST00000291842 APAF1O14727 1248 aa24.21■■□□□ 1.47
SHKBP1-201ENST00000291842 GOLGA2Q08379 1002 aa24.21■■□□□ 1.47
SHKBP1-201ENST00000291842 CRBNQ96SW2 442 aa24.21■■□□□ 1.47
SHKBP1-201ENST00000291842 ZNF521Q96K83 1311 aa24.2■■□□□ 1.46
SHKBP1-201ENST00000291842 C20orf194Q5TEA3 1177 aa24.2■■□□□ 1.46
SHKBP1-201ENST00000291842 IDI1Q13907 227 aa24.2■■□□□ 1.46
SHKBP1-201ENST00000291842 QRICH2Q9H0J4 1663 aa24.19■■□□□ 1.46
SHKBP1-201ENST00000291842 NSD3Q9BZ95 1437 aa24.18■■□□□ 1.46
SHKBP1-201ENST00000291842 SAFB2Q14151 953 aaKnown RBP eCLIP24.17■■□□□ 1.46
SHKBP1-201ENST00000291842 VGFO15240 615 aaPredicted RBP24.17■■□□□ 1.46
SHKBP1-201ENST00000291842 RICTORQ6R327 1708 aa24.16■■□□□ 1.46
SHKBP1-201ENST00000291842 ERICH6Q7L0X2 663 aa24.15■■□□□ 1.46
SHKBP1-201ENST00000291842 MORC1Q86VD1 984 aa24.15■■□□□ 1.46
SHKBP1-201ENST00000291842 SPINK5Q9NQ38 1064 aaPredicted RBP24.15■■□□□ 1.46
SHKBP1-201ENST00000291842 ZC3H13Q5T200 1668 aaKnown RBP24.13■■□□□ 1.45
SHKBP1-201ENST00000291842 SLFN5Q08AF3 891 aa24.13■■□□□ 1.45
SHKBP1-201ENST00000291842 STK26Q9P289 416 aa24.13■■□□□ 1.45
SHKBP1-201ENST00000291842 PIK3C2BO00750 1634 aa24.13■■□□□ 1.45
SHKBP1-201ENST00000291842 NEXMIFQ5QGS0 1516 aa24.12■■□□□ 1.45
SHKBP1-201ENST00000291842 GLI2P10070 1586 aa24.12■■□□□ 1.45
SHKBP1-201ENST00000291842 CABP2Q9NPB3 220 aa24.1■■□□□ 1.45
SHKBP1-201ENST00000291842 DMRT2Q9Y5R5 561 aa24.1■■□□□ 1.45
SHKBP1-201ENST00000291842 SKAP1Q86WV1 359 aa24.09■■□□□ 1.45
SHKBP1-201ENST00000291842 FAM69CQ0P6D2 419 aa24.09■■□□□ 1.45
SHKBP1-201ENST00000291842 FBXO31Q5XUX0 539 aaPredicted RBP24.08■■□□□ 1.45
SHKBP1-201ENST00000291842 ARHGAP31Q2M1Z3 1444 aa24.08■■□□□ 1.45
SHKBP1-201ENST00000291842 EVC2Q86UK5 1308 aa24.07■■□□□ 1.44
SHKBP1-201ENST00000291842 SLC52A1Q9NWF4 448 aa24.07■■□□□ 1.44
SHKBP1-201ENST00000291842 POLR3AO14802 1390 aaPredicted RBP24.06■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms