RNA–Protein interactions for RNA: ENST00000284637.13

SH3RF1-201, Transcript of SH3 domain containing ring finger 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SH3RF1, Length 5,272 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-201ENST00000284637 LNPKQ9C0E8 428 aa20.17■□□□□ 0.82
SH3RF1-201ENST00000284637 WASHC2AQ641Q2 1341 aa20.16■□□□□ 0.82
SH3RF1-201ENST00000284637 NCBP3Q53F19 620 aaKnown RBP20.16■□□□□ 0.82
SH3RF1-201ENST00000284637 C22orf23Q9BZE7 217 aa20.16■□□□□ 0.82
SH3RF1-201ENST00000284637 CCAR2Q8N163 923 aaKnown RBP20.15■□□□□ 0.82
SH3RF1-201ENST00000284637 PDS5BQ9NTI5 1447 aa20.15■□□□□ 0.82
SH3RF1-201ENST00000284637 TPM3P06753 285 aa20.15■□□□□ 0.82
SH3RF1-201ENST00000284637 CNTLNQ9NXG0 1405 aa20.14■□□□□ 0.81
SH3RF1-201ENST00000284637 RIPK4P57078 832 aa20.14■□□□□ 0.81
SH3RF1-201ENST00000284637 CDCA7LQ96GN5 454 aa20.14■□□□□ 0.81
SH3RF1-201ENST00000284637 DIAPH3Q9NSV4 1193 aa20.13■□□□□ 0.81
SH3RF1-201ENST00000284637 MCTP1Q6DN14 999 aa20.13■□□□□ 0.81
SH3RF1-201ENST00000284637 JPH4Q96JJ6 628 aa20.12■□□□□ 0.81
SH3RF1-201ENST00000284637 EVC2Q86UK5 1308 aa20.12■□□□□ 0.81
SH3RF1-201ENST00000284637 PDE4CQ08493 712 aa20.11■□□□□ 0.81
SH3RF1-201ENST00000284637 ANO2Q9NQ90 1003 aa20.11■□□□□ 0.81
SH3RF1-201ENST00000284637 PES1O00541 588 aaKnown RBP20.11■□□□□ 0.81
SH3RF1-201ENST00000284637 MINK1Q8N4C8 1332 aaPredicted RBP20.1■□□□□ 0.81
SH3RF1-201ENST00000284637 COG3Q96JB2 828 aa20.1■□□□□ 0.81
SH3RF1-201ENST00000284637 BACH2Q9BYV9 841 aa20.1■□□□□ 0.81
SH3RF1-201ENST00000284637 NASPP49321 788 aaPredicted RBP20.1■□□□□ 0.81
SH3RF1-201ENST00000284637 TRAK2O60296 914 aa20.1■□□□□ 0.81
SH3RF1-201ENST00000284637 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.09■□□□□ 0.81
SH3RF1-201ENST00000284637 NGEFQ8N5V2 710 aa20.09■□□□□ 0.81
SH3RF1-201ENST00000284637 DIAPH1O60610 1272 aaKnown RBP20.09■□□□□ 0.81
SH3RF1-201ENST00000284637 NECTIN2Q92692 538 aa20.09■□□□□ 0.81
SH3RF1-201ENST00000284637 RUNDC1Q96C34 613 aa20.09■□□□□ 0.81
SH3RF1-201ENST00000284637 ADAMTS8Q9UP79 889 aa20.09■□□□□ 0.81
SH3RF1-201ENST00000284637 CADPSQ9ULU8 1353 aa20.09■□□□□ 0.81
SH3RF1-201ENST00000284637 API5Q9BZZ5 524 aaKnown RBP20.08■□□□□ 0.81
SH3RF1-201ENST00000284637 NUCB2P80303 420 aa20.07■□□□□ 0.8
SH3RF1-201ENST00000284637 ZKSCAN1P17029 563 aaPredicted RBP20.07■□□□□ 0.8
SH3RF1-201ENST00000284637 EIF2S2P20042 333 aaKnown RBP20.07■□□□□ 0.8
SH3RF1-201ENST00000284637 RBM10P98175 930 aaKnown RBP20.06■□□□□ 0.8
SH3RF1-201ENST00000284637 ZNF644Q9H582 1327 aaPredicted RBP20.06■□□□□ 0.8
SH3RF1-201ENST00000284637 CCDC66A2RUB6 948 aa20.06■□□□□ 0.8
SH3RF1-201ENST00000284637 TRHP20396 242 aaPredicted RBP20.06■□□□□ 0.8
SH3RF1-201ENST00000284637 VPS37CA5D8V6 355 aaPredicted RBP20.05■□□□□ 0.8
SH3RF1-201ENST00000284637 TPD52L1Q16890 204 aaPredicted RBP20.05■□□□□ 0.8
SH3RF1-201ENST00000284637 TEX35Q5T0J7 233 aa20.05■□□□□ 0.8
SH3RF1-201ENST00000284637 ZMYND15Q9H091 742 aa20.05■□□□□ 0.8
SH3RF1-201ENST00000284637 VGFO15240 615 aaPredicted RBP20.04■□□□□ 0.8
SH3RF1-201ENST00000284637 BICD2Q8TD16 824 aa20.04■□□□□ 0.8
SH3RF1-201ENST00000284637 RUFY2Q8WXA3 655 aa20.04■□□□□ 0.8
SH3RF1-201ENST00000284637 UACAQ9BZF9 1416 aa20.04■□□□□ 0.8
SH3RF1-201ENST00000284637 ESPNB1AK53 854 aa20.04■□□□□ 0.8
SH3RF1-201ENST00000284637 INTS3Q68E01 1043 aaKnown RBP20.04■□□□□ 0.8
SH3RF1-201ENST00000284637 CCDC39Q9UFE4 941 aa20.03■□□□□ 0.8
SH3RF1-201ENST00000284637 FGD6Q6ZV73 1430 aa20.03■□□□□ 0.8
SH3RF1-201ENST00000284637 SETQ01105 290 aaPredicted RBP20.03■□□□□ 0.8
SH3RF1-201ENST00000284637 CCDC173Q0VFZ6 552 aa20.03■□□□□ 0.8
SH3RF1-201ENST00000284637 C9orf78Q9NZ63 289 aaPredicted RBP20.03■□□□□ 0.8
SH3RF1-201ENST00000284637 RNF214Q8ND24 703 aa20.02■□□□□ 0.8
SH3RF1-201ENST00000284637 EID1Q9Y6B2 187 aa20.02■□□□□ 0.8
SH3RF1-201ENST00000284637 HMGN5P82970 282 aaKnown RBP20.02■□□□□ 0.79
SH3RF1-201ENST00000284637 TEFQ10587 303 aa20.01■□□□□ 0.79
SH3RF1-201ENST00000284637 FKBP5Q13451 457 aaPredicted RBP20.01■□□□□ 0.79
SH3RF1-201ENST00000284637 SMC3Q9UQE7 1217 aa20.01■□□□□ 0.79
SH3RF1-201ENST00000284637 BRD4O60885 1362 aaPredicted RBP20.01■□□□□ 0.79
SH3RF1-201ENST00000284637 IFIT2P09913 472 aaKnown RBP20■□□□□ 0.79
SH3RF1-201ENST00000284637 GPS2Q13227 327 aa20■□□□□ 0.79
SH3RF1-201ENST00000284637 AKNAQ7Z591 1439 aa20■□□□□ 0.79
SH3RF1-201ENST00000284637 TSR1Q2NL82 804 aaKnown RBP19.99■□□□□ 0.79
SH3RF1-201ENST00000284637 HOMER1Q86YM7 354 aa19.99■□□□□ 0.79
SH3RF1-201ENST00000284637 FBXW7Q969H0 707 aa19.99■□□□□ 0.79
SH3RF1-201ENST00000284637 HMOX1P09601 288 aa19.99■□□□□ 0.79
SH3RF1-201ENST00000284637 BCL11BQ9C0K0 894 aaPredicted RBP19.99■□□□□ 0.79
SH3RF1-201ENST00000284637 CHMP4CQ96CF2 233 aa19.97■□□□□ 0.79
SH3RF1-201ENST00000284637 IFT57Q9NWB7 429 aa19.97■□□□□ 0.79
SH3RF1-201ENST00000284637 MARCH6O60337 910 aa19.96■□□□□ 0.79
SH3RF1-201ENST00000284637 CDC45O75419 566 aa19.96■□□□□ 0.79
SH3RF1-201ENST00000284637 TPM1P09493 284 aa19.96■□□□□ 0.79
SH3RF1-201ENST00000284637 C1orf141Q5JVX7 400 aa19.96■□□□□ 0.79
SH3RF1-201ENST00000284637 GGNBP2Q9H3C7 697 aa19.96■□□□□ 0.79
SH3RF1-201ENST00000284637 CAVIN1Q6NZI2 390 aaKnown RBP19.96■□□□□ 0.79
SH3RF1-201ENST00000284637 GRPEL1Q9HAV7 217 aa19.96■□□□□ 0.79
SH3RF1-201ENST00000284637 PDZRN3Q9UPQ7 1066 aa19.96■□□□□ 0.79
SH3RF1-201ENST00000284637 MYOM3Q5VTT5 1437 aa19.95■□□□□ 0.78
SH3RF1-201ENST00000284637 AKAP17AQ02040 695 aaKnown RBP19.95■□□□□ 0.78
SH3RF1-201ENST00000284637 NEXNQ0ZGT2 675 aa19.95■□□□□ 0.78
SH3RF1-201ENST00000284637 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.95■□□□□ 0.78
SH3RF1-201ENST00000284637 PDCL3Q9H2J4 239 aa19.95■□□□□ 0.78
SH3RF1-201ENST00000284637 GNAI1P63096 354 aa19.95■□□□□ 0.78
SH3RF1-201ENST00000284637 AAMPQ13685 434 aa19.95■□□□□ 0.78
SH3RF1-201ENST00000284637 CPLX2Q6PUV4 134 aaKnown RBP19.95■□□□□ 0.78
SH3RF1-201ENST00000284637 CPLX1O14810 134 aa19.95■□□□□ 0.78
SH3RF1-201ENST00000284637 KIF21BO75037 1637 aa19.95■□□□□ 0.78
SH3RF1-201ENST00000284637 SASS6Q6UVJ0 657 aa19.95■□□□□ 0.78
SH3RF1-201ENST00000284637 TCP11L2Q8N4U5 519 aa19.95■□□□□ 0.78
SH3RF1-201ENST00000284637 FOSBP53539 338 aa19.94■□□□□ 0.78
SH3RF1-201ENST00000284637 ATAD2BQ9ULI0 1458 aa19.94■□□□□ 0.78
SH3RF1-201ENST00000284637 IGF1RP08069 1367 aa19.94■□□□□ 0.78
SH3RF1-201ENST00000284637 ROCK1Q13464 1354 aa19.94■□□□□ 0.78
SH3RF1-201ENST00000284637 RNF20Q5VTR2 975 aa19.93■□□□□ 0.78
SH3RF1-201ENST00000284637 GTF2E1P29083 439 aaPredicted RBP19.93■□□□□ 0.78
SH3RF1-201ENST00000284637 SYNE3Q6ZMZ3 975 aa19.93■□□□□ 0.78
SH3RF1-201ENST00000284637 CCDC184Q52MB2 194 aa19.92■□□□□ 0.78
SH3RF1-201ENST00000284637 NOM1Q5C9Z4 860 aaKnown RBP19.92■□□□□ 0.78
SH3RF1-201ENST00000284637 APPP05067 770 aa19.92■□□□□ 0.78
SH3RF1-201ENST00000284637 MTHFSP49914 203 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms