RNA–Protein interactions for RNA: ENST00000279247.10

CAPN1-201, Transcript of calpain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CAPN1, Length 3,007 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-201ENST00000279247 FBXO31Q5XUX0 539 aaPredicted RBP24.41■■□□□ 1.5
CAPN1-201ENST00000279247 MADDQ8WXG6 1647 aa24.4■■□□□ 1.5
CAPN1-201ENST00000279247 RNF17Q9BXT8 1623 aaKnown RBP24.37■■□□□ 1.49
CAPN1-201ENST00000279247 NOS1P29475 1434 aa24.37■■□□□ 1.49
CAPN1-201ENST00000279247 TMEM132EQ6IEE7 984 aa24.36■■□□□ 1.49
CAPN1-201ENST00000279247 SALL2Q9Y467 1007 aaPredicted RBP24.36■■□□□ 1.49
CAPN1-201ENST00000279247 TRAK1Q9UPV9 953 aa24.35■■□□□ 1.49
CAPN1-201ENST00000279247 KIF1BO60333 1816 aa24.34■■□□□ 1.49
CAPN1-201ENST00000279247 KTN1Q86UP2 1357 aaKnown RBP24.33■■□□□ 1.48
CAPN1-201ENST00000279247 SIGLEC1Q9BZZ2 1709 aa24.32■■□□□ 1.48
CAPN1-201ENST00000279247 ABCC3O15438 1527 aa24.32■■□□□ 1.48
CAPN1-201ENST00000279247 PER1O15534 1290 aaPredicted RBP24.32■■□□□ 1.48
CAPN1-201ENST00000279247 MROH2AA6NES4 1674 aa24.32■■□□□ 1.48
CAPN1-201ENST00000279247 MYBBP1AQ9BQG0 1328 aaKnown RBP24.31■■□□□ 1.48
CAPN1-201ENST00000279247 SCAF11Q99590 1463 aaKnown RBP24.31■■□□□ 1.48
CAPN1-201ENST00000279247 RALBP1Q15311 655 aa24.3■■□□□ 1.48
CAPN1-201ENST00000279247 STAC3Q96MF2 364 aa24.29■■□□□ 1.48
CAPN1-201ENST00000279247 IDI1Q13907 227 aa24.29■■□□□ 1.48
CAPN1-201ENST00000279247 ZMYM4Q5VZL5 1548 aa24.29■■□□□ 1.48
CAPN1-201ENST00000279247 PNISRQ8TF01 805 aaKnown RBP24.29■■□□□ 1.48
CAPN1-201ENST00000279247 LMTK2Q8IWU2 1503 aa24.28■■□□□ 1.48
CAPN1-201ENST00000279247 LAMC1P11047 1609 aa24.27■■□□□ 1.48
CAPN1-201ENST00000279247 SAFB2Q14151 953 aaKnown RBP eCLIP24.26■■□□□ 1.47
CAPN1-201ENST00000279247 KNSTRNQ9Y448 316 aa24.26■■□□□ 1.47
CAPN1-201ENST00000279247 ZBED9Q6R2W3 1325 aa24.25■■□□□ 1.47
CAPN1-201ENST00000279247 EIF3AQ14152 1382 aaKnown RBP24.25■■□□□ 1.47
CAPN1-201ENST00000279247 STAG3Q9UJ98 1225 aa24.23■■□□□ 1.47
CAPN1-201ENST00000279247 NLRP13Q86W25 1043 aa24.22■■□□□ 1.47
CAPN1-201ENST00000279247 ESF1Q9H501 851 aaKnown RBP24.22■■□□□ 1.47
CAPN1-201ENST00000279247 CAMSAP1Q5T5Y3 1602 aa24.22■■□□□ 1.47
CAPN1-201ENST00000279247 STK26Q9P289 416 aa24.21■■□□□ 1.47
CAPN1-201ENST00000279247 IQGAP1P46940 1657 aa24.21■■□□□ 1.47
CAPN1-201ENST00000279247 CDCA8Q53HL2 280 aa24.21■■□□□ 1.47
CAPN1-201ENST00000279247 CEBPAP49715 358 aaPredicted RBP24.2■■□□□ 1.46
CAPN1-201ENST00000279247 MYOM2P54296 1465 aa24.19■■□□□ 1.46
CAPN1-201ENST00000279247 ADGRB3O60242 1522 aa24.19■■□□□ 1.46
CAPN1-201ENST00000279247 PARD3Q8TEW0 1356 aa24.18■■□□□ 1.46
CAPN1-201ENST00000279247 BRD4O60885 1362 aaPredicted RBP24.18■■□□□ 1.46
CAPN1-201ENST00000279247 CENPJQ9HC77 1338 aaPredicted RBP24.16■■□□□ 1.46
CAPN1-201ENST00000279247 C14orf93Q9H972 538 aaKnown RBP24.16■■□□□ 1.46
CAPN1-201ENST00000279247 VGFO15240 615 aaPredicted RBP24.15■■□□□ 1.46
CAPN1-201ENST00000279247 ARHGEF40Q8TER5 1519 aa24.14■■□□□ 1.46
CAPN1-201ENST00000279247 SYNMO15061 1565 aa24.14■■□□□ 1.45
CAPN1-201ENST00000279247 IFT172Q9UG01 1749 aa24.11■■□□□ 1.45
CAPN1-201ENST00000279247 SLC52A1Q9NWF4 448 aa24.11■■□□□ 1.45
CAPN1-201ENST00000279247 CLTCQ00610 1675 aaKnown RBP24.11■■□□□ 1.45
CAPN1-201ENST00000279247 PIK3C2GO75747 1445 aa24.11■■□□□ 1.45
CAPN1-201ENST00000279247 PELP1Q8IZL8 1130 aaKnown RBP24.1■■□□□ 1.45
CAPN1-201ENST00000279247 RPGRIP1LQ68CZ1 1315 aa24.1■■□□□ 1.45
CAPN1-201ENST00000279247 AMER1Q5JTC6 1135 aaPredicted RBP24.09■■□□□ 1.45
CAPN1-201ENST00000279247 TNNT2P45379 298 aaPredicted RBP24.09■■□□□ 1.45
CAPN1-201ENST00000279247 SLC12A5Q9H2X9 1139 aa24.08■■□□□ 1.45
CAPN1-201ENST00000279247 PPLO60437 1756 aa24.08■■□□□ 1.45
CAPN1-201ENST00000279247 ZMYM3Q14202 1370 aa24.08■■□□□ 1.45
CAPN1-201ENST00000279247 ERVK-7P63135 1459 aa24.08■■□□□ 1.45
CAPN1-201ENST00000279247 NEURL4Q96JN8 1562 aa24.07■■□□□ 1.44
CAPN1-201ENST00000279247 KIAA1210Q9ULL0 1709 aa24.06■■□□□ 1.44
CAPN1-201ENST00000279247 NRXN1Q9ULB1 1477 aa24.06■■□□□ 1.44
CAPN1-201ENST00000279247 PPP2R1AP30153 589 aa24.05■■□□□ 1.44
CAPN1-201ENST00000279247 AGLP35573 1532 aa24.05■■□□□ 1.44
CAPN1-201ENST00000279247 CARD14Q9BXL6 1004 aa24.05■■□□□ 1.44
CAPN1-201ENST00000279247 ARHGAP31Q2M1Z3 1444 aa24.05■■□□□ 1.44
CAPN1-201ENST00000279247 LRPPRCP42704 1394 aaKnown RBP24.04■■□□□ 1.44
CAPN1-201ENST00000279247 MYO5BQ9ULV0 1848 aa24.03■■□□□ 1.44
CAPN1-201ENST00000279247 NUDCQ9Y266 331 aa24.02■■□□□ 1.44
CAPN1-201ENST00000279247 CABP2Q9NPB3 220 aa24.02■■□□□ 1.44
CAPN1-201ENST00000279247 KDM5AP29375 1690 aaKnown RBP24.01■■□□□ 1.43
CAPN1-201ENST00000279247 ADAMTS8Q9UP79 889 aa24.01■■□□□ 1.43
CAPN1-201ENST00000279247 PREX1Q8TCU6 1659 aa24■■□□□ 1.43
CAPN1-201ENST00000279247 NEXMIFQ5QGS0 1516 aa24■■□□□ 1.43
CAPN1-201ENST00000279247 REREQ9P2R6 1566 aa24■■□□□ 1.43
CAPN1-201ENST00000279247 PIK3C2BO00750 1634 aa24■■□□□ 1.43
CAPN1-201ENST00000279247 WDR43Q15061 677 aaKnown RBP eCLIP24■■□□□ 1.43
CAPN1-201ENST00000279247 MINK1Q8N4C8 1332 aaPredicted RBP23.99■■□□□ 1.43
CAPN1-201ENST00000279247 ZC3H13Q5T200 1668 aaKnown RBP23.98■■□□□ 1.43
CAPN1-201ENST00000279247 ADGRB1O14514 1584 aa23.98■■□□□ 1.43
CAPN1-201ENST00000279247 CDCA7LQ96GN5 454 aa23.97■■□□□ 1.43
CAPN1-201ENST00000279247 POGKQ9P215 609 aa23.97■■□□□ 1.43
CAPN1-201ENST00000279247 SRPK2P78362 688 aaKnown RBP23.97■■□□□ 1.43
CAPN1-201ENST00000279247 MYOM1P52179 1685 aa23.97■■□□□ 1.43
CAPN1-201ENST00000279247 PPP6R1Q9UPN7 881 aa23.97■■□□□ 1.43
CAPN1-201ENST00000279247 SLC24A1O60721 1099 aa23.96■■□□□ 1.43
CAPN1-201ENST00000279247 ASXL1Q8IXJ9 1541 aa23.96■■□□□ 1.43
CAPN1-201ENST00000279247 CCDC146Q8IYE0 955 aa23.95■■□□□ 1.42
CAPN1-201ENST00000279247 PRAM1Q96QH2 718 aa23.95■■□□□ 1.42
CAPN1-201ENST00000279247 B4GALNT3Q6L9W6 998 aa23.94■■□□□ 1.42
CAPN1-201ENST00000279247 SMG6Q86US8 1419 aaKnown RBP23.94■■□□□ 1.42
CAPN1-201ENST00000279247 SETBP1Q9Y6X0 1596 aa23.93■■□□□ 1.42
CAPN1-201ENST00000279247 QRICH2Q9H0J4 1663 aa23.92■■□□□ 1.42
CAPN1-201ENST00000279247 EVC2Q86UK5 1308 aa23.92■■□□□ 1.42
CAPN1-201ENST00000279247 NSD3Q9BZ95 1437 aa23.92■■□□□ 1.42
CAPN1-201ENST00000279247 TMEM131LA2VDJ0 1609 aa23.9■■□□□ 1.42
CAPN1-201ENST00000279247 MORC1Q86VD1 984 aa23.9■■□□□ 1.42
CAPN1-201ENST00000279247 TSHZ2Q9NRE2 1034 aa23.89■■□□□ 1.41
CAPN1-201ENST00000279247 SBNO2Q9Y2G9 1366 aa23.88■■□□□ 1.41
CAPN1-201ENST00000279247 WAPLQ7Z5K2 1190 aa23.87■■□□□ 1.41
CAPN1-201ENST00000279247 TNRQ92752 1358 aa23.86■■□□□ 1.41
CAPN1-201ENST00000279247 MYO3AQ8NEV4 1616 aa23.83■■□□□ 1.41
CAPN1-201ENST00000279247 A2ML1A8K2U0 1454 aa23.83■■□□□ 1.41
CAPN1-201ENST00000279247 PPP4R2Q9NY27 417 aa23.83■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms