RNA–Protein interactions for RNA: ENST00000273286.5

LRTM1-201, Transcript of leucine rich repeats and transmembrane domains 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LRTM1, Length 1,423 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRTM1-201ENST00000273286 NBR1Q14596 966 aa16.77■□□□□ 0.27
LRTM1-201ENST00000273286 KCTD12Q96CX2 325 aaKnown RBP16.77■□□□□ 0.27
LRTM1-201ENST00000273286 KIF13AQ9H1H9 1805 aa16.76■□□□□ 0.27
LRTM1-201ENST00000273286 C6orf132Q5T0Z8 1188 aa16.74■□□□□ 0.27
LRTM1-201ENST00000273286 ABCC10Q5T3U5 1492 aa16.74■□□□□ 0.27
LRTM1-201ENST00000273286 BHMG1C9JSJ3 638 aaPredicted RBP16.73■□□□□ 0.27
LRTM1-201ENST00000273286 PROX2Q3B8N5 592 aa16.73■□□□□ 0.27
LRTM1-201ENST00000273286 HCSTQ9UBK5 93 aa16.73■□□□□ 0.27
LRTM1-201ENST00000273286 CARMIL1Q5VZK9 1371 aa16.72■□□□□ 0.27
LRTM1-201ENST00000273286 MRPL50Q8N5N7 158 aaKnown RBP16.7■□□□□ 0.26
LRTM1-201ENST00000273286 NBPF3Q9H094 633 aa16.7■□□□□ 0.26
LRTM1-201ENST00000273286 ADCY10Q96PN6 1610 aa16.7■□□□□ 0.26
LRTM1-201ENST00000273286 CARMIL2Q6F5E8 1435 aa16.7■□□□□ 0.26
LRTM1-201ENST00000273286 EN1Q05925 392 aaPredicted RBP16.7■□□□□ 0.26
LRTM1-201ENST00000273286 FAM69CQ0P6D2 419 aa16.7■□□□□ 0.26
LRTM1-201ENST00000273286 MAP3K7O43318 606 aa16.69■□□□□ 0.26
LRTM1-201ENST00000273286 GRXCR2A6NFK2 248 aa16.68■□□□□ 0.26
LRTM1-201ENST00000273286 DIP2BQ9P265 1576 aa16.67■□□□□ 0.26
LRTM1-201ENST00000273286 GOLGA8CPA6NN73 597 aa16.67■□□□□ 0.26
LRTM1-201ENST00000273286 RABGEF1Q9UJ41 708 aa16.67■□□□□ 0.26
LRTM1-201ENST00000273286 PTPRGP23470 1445 aa16.67■□□□□ 0.26
LRTM1-201ENST00000273286 TSR1Q2NL82 804 aaKnown RBP16.65■□□□□ 0.26
LRTM1-201ENST00000273286 IQGAP2Q13576 1575 aa16.64■□□□□ 0.26
LRTM1-201ENST00000273286 TNIKQ9UKE5 1360 aa16.64■□□□□ 0.25
LRTM1-201ENST00000273286 PLCB2Q00722 1185 aa16.64■□□□□ 0.25
LRTM1-201ENST00000273286 KCNV2Q8TDN2 545 aa16.62■□□□□ 0.25
LRTM1-201ENST00000273286 WNT2BQ93097 391 aa16.62■□□□□ 0.25
LRTM1-201ENST00000273286 ABCC2Q92887 1545 aa16.6■□□□□ 0.25
LRTM1-201ENST00000273286 PRIM1P49642 420 aaKnown RBP16.6■□□□□ 0.25
LRTM1-201ENST00000273286 KIAA1468Q9P260 1216 aa16.6■□□□□ 0.25
LRTM1-201ENST00000273286 PTPN5P54829 565 aa16.59■□□□□ 0.25
LRTM1-201ENST00000273286 RAPGEF2Q9Y4G8 1499 aa16.58■□□□□ 0.25
LRTM1-201ENST00000273286 TRIM6-TRIM34B2RNG4 842 aa16.58■□□□□ 0.24
LRTM1-201ENST00000273286 THSD4Q6ZMP0 1018 aa16.58■□□□□ 0.24
LRTM1-201ENST00000273286 UHRF1BP1LA0JNW5 1464 aa16.57■□□□□ 0.24
LRTM1-201ENST00000273286 ARHGEF1Q92888 912 aaKnown RBP16.57■□□□□ 0.24
LRTM1-201ENST00000273286 PLB1Q6P1J6 1458 aa16.57■□□□□ 0.24
LRTM1-201ENST00000273286 ONECUT3O60422 494 aaPredicted RBP16.56■□□□□ 0.24
LRTM1-201ENST00000273286 KDM6BO15054 1643 aa16.55■□□□□ 0.24
LRTM1-201ENST00000273286 OSBPP22059 807 aa16.54■□□□□ 0.24
LRTM1-201ENST00000273286 UGGT2Q9NYU1 1516 aa16.54■□□□□ 0.24
LRTM1-201ENST00000273286 UACAQ9BZF9 1416 aa16.54■□□□□ 0.24
LRTM1-201ENST00000273286 SEPT9Q9UHD8 586 aaPredicted RBP16.53■□□□□ 0.24
LRTM1-201ENST00000273286 DISP1Q96F81 1524 aa16.53■□□□□ 0.24
LRTM1-201ENST00000273286 LAPTM4BQ86VI4 370 aa16.53■□□□□ 0.24
LRTM1-201ENST00000273286 PLA2G2EQ9NZK7 142 aa16.53■□□□□ 0.24
LRTM1-201ENST00000273286 ASXL2Q76L83 1435 aa16.52■□□□□ 0.23
LRTM1-201ENST00000273286 GLI2P10070 1586 aa16.51■□□□□ 0.23
LRTM1-201ENST00000273286 ANKK1Q8NFD2 765 aa16.51■□□□□ 0.23
LRTM1-201ENST00000273286 TTBK1Q5TCY1 1321 aaPredicted RBP16.5■□□□□ 0.23
LRTM1-201ENST00000273286 CDHR5Q9HBB8 845 aa16.5■□□□□ 0.23
LRTM1-201ENST00000273286 TSKSQ9UJT2 592 aa16.5■□□□□ 0.23
LRTM1-201ENST00000273286 TSPOAP1O95153 1857 aa16.49■□□□□ 0.23
LRTM1-201ENST00000273286 P3H3Q8IVL6 736 aa16.49■□□□□ 0.23
LRTM1-201ENST00000273286 CERKQ8TCT0 537 aa16.48■□□□□ 0.23
LRTM1-201ENST00000273286 KDM5BQ9UGL1 1544 aa16.48■□□□□ 0.23
LRTM1-201ENST00000273286 KIAA0556O60303 1618 aa16.48■□□□□ 0.23
LRTM1-201ENST00000273286 CDCA7LQ96GN5 454 aa16.46■□□□□ 0.23
LRTM1-201ENST00000273286 ZFRQ96KR1 1074 aaKnown RBP16.46■□□□□ 0.23
LRTM1-201ENST00000273286 MLLT3P42568 568 aaPredicted RBP16.45■□□□□ 0.22
LRTM1-201ENST00000273286 PRSS12P56730 875 aa16.45■□□□□ 0.22
LRTM1-201ENST00000273286 PACS2Q86VP3 889 aa16.45■□□□□ 0.22
LRTM1-201ENST00000273286 GOLGA3Q08378 1498 aa16.45■□□□□ 0.22
LRTM1-201ENST00000273286 BCAMP50895 628 aa16.44■□□□□ 0.22
LRTM1-201ENST00000273286 FAM98CQ17RN3 349 aaKnown RBP16.44■□□□□ 0.22
LRTM1-201ENST00000273286 CTTNBP2Q8WZ74 1663 aa16.43■□□□□ 0.22
LRTM1-201ENST00000273286 HAP1P54257 671 aaPredicted RBP16.43■□□□□ 0.22
LRTM1-201ENST00000273286 EPRSP07814 1512 aaKnown RBP16.42■□□□□ 0.22
LRTM1-201ENST00000273286 TEX14Q8IWB6 1497 aa16.42■□□□□ 0.22
LRTM1-201ENST00000273286 FAM198AQ9UFP1 575 aa16.41■□□□□ 0.22
LRTM1-201ENST00000273286 ZCCHC11Q5TAX3 1644 aaKnown RBP16.4■□□□□ 0.22
LRTM1-201ENST00000273286 PPRC1Q5VV67 1664 aaKnown RBP16.39■□□□□ 0.21
LRTM1-201ENST00000273286 MAP3K4Q9Y6R4 1608 aa16.39■□□□□ 0.21
LRTM1-201ENST00000273286 SOWAHBA6NEL2 793 aa16.39■□□□□ 0.21
LRTM1-201ENST00000273286 FAM9AQ8IZU1 332 aaPredicted RBP16.39■□□□□ 0.21
LRTM1-201ENST00000273286 PRXQ9BXM0 1461 aa16.38■□□□□ 0.21
LRTM1-201ENST00000273286 WDR7Q9Y4E6 1490 aa16.37■□□□□ 0.21
LRTM1-201ENST00000273286 SMAPO00193 183 aa16.36■□□□□ 0.21
LRTM1-201ENST00000273286 NBPF26B4DH59 902 aa16.35■□□□□ 0.21
LRTM1-201ENST00000273286 RBM27Q9P2N5 1060 aaKnown RBP16.35■□□□□ 0.21
LRTM1-201ENST00000273286 LRCH3Q96II8 777 aa16.34■□□□□ 0.21
LRTM1-201ENST00000273286 NPDC1Q9NQX5 325 aaPredicted RBP16.33■□□□□ 0.2
LRTM1-201ENST00000273286 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.33■□□□□ 0.2
LRTM1-201ENST00000273286 PNMA3Q9UL41 463 aa16.33■□□□□ 0.2
LRTM1-201ENST00000273286 C3orf80F5H4A9 247 aa16.32■□□□□ 0.2
LRTM1-201ENST00000273286 TATDN2Q93075 761 aa16.32■□□□□ 0.2
LRTM1-201ENST00000273286 ABCA8O94911 1581 aa16.32■□□□□ 0.2
LRTM1-201ENST00000273286 PADI6Q6TGC4 694 aa16.31■□□□□ 0.2
LRTM1-201ENST00000273286 SEMA3EO15041 775 aa16.3■□□□□ 0.2
LRTM1-201ENST00000273286 WBP1LQ9NX94 342 aa16.3■□□□□ 0.2
LRTM1-201ENST00000273286 CFAP43Q8NDM7 1665 aa16.29■□□□□ 0.2
LRTM1-201ENST00000273286 MAGI3Q5TCQ9 1506 aa16.29■□□□□ 0.2
LRTM1-201ENST00000273286 HPS5Q9UPZ3 1129 aa16.28■□□□□ 0.2
LRTM1-201ENST00000273286 NUDT18Q6ZVK8 323 aa16.28■□□□□ 0.2
LRTM1-201ENST00000273286 COL17A1Q9UMD9 1497 aaPredicted RBP16.27■□□□□ 0.2
LRTM1-201ENST00000273286 CD109Q6YHK3 1445 aa16.27■□□□□ 0.19
LRTM1-201ENST00000273286 TTC13Q8NBP0 860 aa16.26■□□□□ 0.19
LRTM1-201ENST00000273286 TSR3Q9UJK0 312 aaKnown RBP16.26■□□□□ 0.19
LRTM1-201ENST00000273286 ADGRL1O94910 1474 aa16.25■□□□□ 0.19
LRTM1-201ENST00000273286 SAMD7Q7Z3H4 446 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms