RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 CFAP65Q6ZU64 1925 aaKnown RBP22.91■■□□□ 1.26
CCDC40-201ENST00000269318 DISP3Q9P2K9 1392 aa22.9■■□□□ 1.26
CCDC40-201ENST00000269318 CCDC184Q52MB2 194 aa22.9■■□□□ 1.26
CCDC40-201ENST00000269318 ADGRF5Q8IZF2 1346 aa22.9■■□□□ 1.26
CCDC40-201ENST00000269318 AGLP35573 1532 aa22.89■■□□□ 1.25
CCDC40-201ENST00000269318 PPLO60437 1756 aa22.87■■□□□ 1.25
CCDC40-201ENST00000269318 TMF1P82094 1093 aa22.84■■□□□ 1.25
CCDC40-201ENST00000269318 CFAP70Q5T0N1 1121 aa22.83■■□□□ 1.25
CCDC40-201ENST00000269318 RPGRIP1LQ68CZ1 1315 aa22.83■■□□□ 1.25
CCDC40-201ENST00000269318 CHGAP10645 457 aaKnown RBP22.82■■□□□ 1.24
CCDC40-201ENST00000269318 PREX1Q8TCU6 1659 aa22.82■■□□□ 1.24
CCDC40-201ENST00000269318 PIK3C2GO75747 1445 aa22.82■■□□□ 1.24
CCDC40-201ENST00000269318 MRS2Q9HD23 443 aa22.81■■□□□ 1.24
CCDC40-201ENST00000269318 ARHGEF40Q8TER5 1519 aa22.81■■□□□ 1.24
CCDC40-201ENST00000269318 EIF3AQ14152 1382 aaKnown RBP22.8■■□□□ 1.24
CCDC40-201ENST00000269318 SETBP1Q9Y6X0 1596 aa22.8■■□□□ 1.24
CCDC40-201ENST00000269318 PPP6R1Q9UPN7 881 aa22.78■■□□□ 1.24
CCDC40-201ENST00000269318 KTN1Q86UP2 1357 aaKnown RBP22.78■■□□□ 1.24
CCDC40-201ENST00000269318 SLC52A1Q9NWF4 448 aa22.78■■□□□ 1.24
CCDC40-201ENST00000269318 NEXMIFQ5QGS0 1516 aa22.77■■□□□ 1.24
CCDC40-201ENST00000269318 PER1O15534 1290 aaPredicted RBP22.77■■□□□ 1.24
CCDC40-201ENST00000269318 IDI1Q13907 227 aa22.76■■□□□ 1.23
CCDC40-201ENST00000269318 C14orf93Q9H972 538 aaKnown RBP22.74■■□□□ 1.23
CCDC40-201ENST00000269318 MYO3AQ8NEV4 1616 aa22.74■■□□□ 1.23
CCDC40-201ENST00000269318 ADGRB1O14514 1584 aa22.74■■□□□ 1.23
CCDC40-201ENST00000269318 HNRNPUQ00839 825 aaKnown RBP eCLIP22.74■■□□□ 1.23
CCDC40-201ENST00000269318 ERVK-7P63135 1459 aa22.73■■□□□ 1.23
CCDC40-201ENST00000269318 RALBP1Q15311 655 aa22.72■■□□□ 1.23
CCDC40-201ENST00000269318 TMEM131LA2VDJ0 1609 aa22.72■■□□□ 1.23
CCDC40-201ENST00000269318 CLTCQ00610 1675 aaKnown RBP22.71■■□□□ 1.23
CCDC40-201ENST00000269318 CNGB1Q14028 1251 aaPredicted RBP22.71■■□□□ 1.23
CCDC40-201ENST00000269318 PARD3Q8TEW0 1356 aa22.71■■□□□ 1.23
CCDC40-201ENST00000269318 ZFYVE9O95405 1425 aa22.7■■□□□ 1.22
CCDC40-201ENST00000269318 CDCA8Q53HL2 280 aa22.7■■□□□ 1.22
CCDC40-201ENST00000269318 FAM9BQ8IZU0 186 aa22.7■■□□□ 1.22
CCDC40-201ENST00000269318 PANK3Q9H999 370 aa22.7■■□□□ 1.22
CCDC40-201ENST00000269318 FBXO31Q5XUX0 539 aaPredicted RBP22.69■■□□□ 1.22
CCDC40-201ENST00000269318 MYBBP1AQ9BQG0 1328 aaKnown RBP22.69■■□□□ 1.22
CCDC40-201ENST00000269318 SBNO2Q9Y2G9 1366 aa22.68■■□□□ 1.22
CCDC40-201ENST00000269318 VGFO15240 615 aaPredicted RBP22.68■■□□□ 1.22
CCDC40-201ENST00000269318 MYO5BQ9ULV0 1848 aa22.67■■□□□ 1.22
CCDC40-201ENST00000269318 SLC24A1O60721 1099 aa22.67■■□□□ 1.22
CCDC40-201ENST00000269318 MYOM1P52179 1685 aa22.66■■□□□ 1.22
CCDC40-201ENST00000269318 SPATA31D1Q6ZQQ2 1576 aa22.66■■□□□ 1.22
CCDC40-201ENST00000269318 KDM5AP29375 1690 aaKnown RBP22.65■■□□□ 1.22
CCDC40-201ENST00000269318 BRD4O60885 1362 aaPredicted RBP22.65■■□□□ 1.22
CCDC40-201ENST00000269318 NUTM2DQ5VT03 806 aaPredicted RBP22.62■■□□□ 1.21
CCDC40-201ENST00000269318 PNISRQ8TF01 805 aaKnown RBP22.62■■□□□ 1.21
CCDC40-201ENST00000269318 CENPJQ9HC77 1338 aaPredicted RBP22.61■■□□□ 1.21
CCDC40-201ENST00000269318 MLECQ14165 292 aa22.61■■□□□ 1.21
CCDC40-201ENST00000269318 TMEM132EQ6IEE7 984 aa22.61■■□□□ 1.21
CCDC40-201ENST00000269318 TMC1Q8TDI8 760 aa22.61■■□□□ 1.21
CCDC40-201ENST00000269318 ZBED9Q6R2W3 1325 aa22.59■■□□□ 1.21
CCDC40-201ENST00000269318 TRAK1Q9UPV9 953 aa22.59■■□□□ 1.21
CCDC40-201ENST00000269318 QRICH2Q9H0J4 1663 aa22.58■■□□□ 1.21
CCDC40-201ENST00000269318 NLRP13Q86W25 1043 aa22.58■■□□□ 1.21
CCDC40-201ENST00000269318 LRPPRCP42704 1394 aaKnown RBP22.57■■□□□ 1.2
CCDC40-201ENST00000269318 SUPT16HQ9Y5B9 1047 aaKnown RBP22.57■■□□□ 1.2
CCDC40-201ENST00000269318 ASXL1Q8IXJ9 1541 aa22.57■■□□□ 1.2
CCDC40-201ENST00000269318 CC2D1BQ5T0F9 858 aaKnown RBP22.56■■□□□ 1.2
CCDC40-201ENST00000269318 ARHGEF28Q8N1W1 1705 aaKnown RBP22.56■■□□□ 1.2
CCDC40-201ENST00000269318 A2ML1A8K2U0 1454 aa22.55■■□□□ 1.2
CCDC40-201ENST00000269318 ZMYM3Q14202 1370 aa22.54■■□□□ 1.2
CCDC40-201ENST00000269318 AMER1Q5JTC6 1135 aaPredicted RBP22.54■■□□□ 1.2
CCDC40-201ENST00000269318 KNSTRNQ9Y448 316 aa22.53■■□□□ 1.2
CCDC40-201ENST00000269318 NPC1L1Q9UHC9 1359 aa22.52■■□□□ 1.2
CCDC40-201ENST00000269318 STAG3Q9UJ98 1225 aa22.49■■□□□ 1.19
CCDC40-201ENST00000269318 ESF1Q9H501 851 aaKnown RBP22.49■■□□□ 1.19
CCDC40-201ENST00000269318 ALKQ9UM73 1620 aa22.48■■□□□ 1.19
CCDC40-201ENST00000269318 TULP4Q9NRJ4 1543 aa22.46■■□□□ 1.19
CCDC40-201ENST00000269318 RIMS2Q9UQ26 1411 aa22.46■■□□□ 1.19
CCDC40-201ENST00000269318 PTPRMP28827 1452 aa22.45■■□□□ 1.18
CCDC40-201ENST00000269318 PUS7Q96PZ0 661 aaKnown RBP22.45■■□□□ 1.18
CCDC40-201ENST00000269318 YTHDC2Q9H6S0 1430 aaKnown RBP22.44■■□□□ 1.18
CCDC40-201ENST00000269318 CARD14Q9BXL6 1004 aa22.44■■□□□ 1.18
CCDC40-201ENST00000269318 INSRP06213 1382 aa22.42■■□□□ 1.18
CCDC40-201ENST00000269318 TNRQ92752 1358 aa22.42■■□□□ 1.18
CCDC40-201ENST00000269318 PPP2R1AP30153 589 aa22.41■■□□□ 1.18
CCDC40-201ENST00000269318 FKBP8Q14318 412 aa22.41■■□□□ 1.18
CCDC40-201ENST00000269318 SETD1AO15047 1707 aaKnown RBP22.41■■□□□ 1.18
CCDC40-201ENST00000269318 EVC2Q86UK5 1308 aa22.41■■□□□ 1.18
CCDC40-201ENST00000269318 SENP3Q9H4L4 574 aaPredicted RBP22.39■■□□□ 1.18
CCDC40-201ENST00000269318 STK26Q9P289 416 aa22.39■■□□□ 1.18
CCDC40-201ENST00000269318 NEFLP07196 543 aa22.38■■□□□ 1.17
CCDC40-201ENST00000269318 NRXN3Q9Y4C0 1643 aa22.37■■□□□ 1.17
CCDC40-201ENST00000269318 SLC12A5Q9H2X9 1139 aa22.37■■□□□ 1.17
CCDC40-201ENST00000269318 SMG6Q86US8 1419 aaKnown RBP22.37■■□□□ 1.17
CCDC40-201ENST00000269318 BLMP54132 1417 aaPredicted RBP22.36■■□□□ 1.17
CCDC40-201ENST00000269318 DLC1Q96QB1 1528 aa22.35■■□□□ 1.17
CCDC40-201ENST00000269318 UBR1Q8IWV7 1749 aa22.35■■□□□ 1.17
CCDC40-201ENST00000269318 TRHP20396 242 aaPredicted RBP22.35■■□□□ 1.17
CCDC40-201ENST00000269318 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.35■■□□□ 1.17
CCDC40-201ENST00000269318 USP32Q8NFA0 1604 aa22.34■■□□□ 1.17
CCDC40-201ENST00000269318 NSD3Q9BZ95 1437 aa22.34■■□□□ 1.17
CCDC40-201ENST00000269318 PRAM1Q96QH2 718 aa22.34■■□□□ 1.17
CCDC40-201ENST00000269318 SAFB2Q14151 953 aaKnown RBP eCLIP22.33■■□□□ 1.17
CCDC40-201ENST00000269318 ANKRD36BQ8N2N9 1353 aa22.3■■□□□ 1.16
CCDC40-201ENST00000269318 CABP2Q9NPB3 220 aa22.3■■□□□ 1.16
CCDC40-201ENST00000269318 NLRP1Q9C000 1473 aa22.3■■□□□ 1.16
CCDC40-201ENST00000269318 TMEM2Q9UHN6 1383 aa22.3■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms