RNA–Protein interactions for RNA: ENST00000261726.10

CUX2-201, Transcript of cut like homeobox 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CUX2, Length 6,844 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-201ENST00000261726 CCDC47Q96A33 483 aaKnown RBP17.47■□□□□ 0.39
CUX2-201ENST00000261726 RRP12Q5JTH9 1297 aaKnown RBP17.47■□□□□ 0.39
CUX2-201ENST00000261726 BCL11BQ9C0K0 894 aaPredicted RBP17.47■□□□□ 0.39
CUX2-201ENST00000261726 VPS37DQ86XT2 251 aa17.46■□□□□ 0.39
CUX2-201ENST00000261726 CWC22Q9HCG8 908 aaKnown RBP17.46■□□□□ 0.39
CUX2-201ENST00000261726 FGD5Q6ZNL6 1462 aa17.46■□□□□ 0.39
CUX2-201ENST00000261726 ANKRD20A12PQ8NF67 263 aa17.46■□□□□ 0.39
CUX2-201ENST00000261726 CPLX2Q6PUV4 134 aaKnown RBP17.46■□□□□ 0.39
CUX2-201ENST00000261726 NAP1L1P55209 391 aaKnown RBP17.46■□□□□ 0.39
CUX2-201ENST00000261726 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.46■□□□□ 0.39
CUX2-201ENST00000261726 CPLX1O14810 134 aa17.45■□□□□ 0.38
CUX2-201ENST00000261726 CHMP4CQ96CF2 233 aa17.45■□□□□ 0.38
CUX2-201ENST00000261726 C9orf78Q9NZ63 289 aaPredicted RBP17.45■□□□□ 0.38
CUX2-201ENST00000261726 BICD2Q8TD16 824 aa17.45■□□□□ 0.38
CUX2-201ENST00000261726 CCDC43Q96MW1 224 aaKnown RBP17.45■□□□□ 0.38
CUX2-201ENST00000261726 NFXL1Q6ZNB6 911 aa17.45■□□□□ 0.38
CUX2-201ENST00000261726 NESP48681 1621 aa17.45■□□□□ 0.38
CUX2-201ENST00000261726 VSIG10Q8N0Z9 540 aa17.45■□□□□ 0.38
CUX2-201ENST00000261726 CALRP27797 417 aaKnown RBP17.44■□□□□ 0.38
CUX2-201ENST00000261726 SYTL4Q96C24 671 aaPredicted RBP17.44■□□□□ 0.38
CUX2-201ENST00000261726 WASHC2CQ9Y4E1 1318 aa17.44■□□□□ 0.38
CUX2-201ENST00000261726 NLRP13Q86W25 1043 aa17.44■□□□□ 0.38
CUX2-201ENST00000261726 TTC5Q8N0Z6 440 aa17.44■□□□□ 0.38
CUX2-201ENST00000261726 HNRNPMP52272 730 aaKnown RBP eCLIP17.44■□□□□ 0.38
CUX2-201ENST00000261726 SKOR2Q2VWA4 1001 aaPredicted RBP17.44■□□□□ 0.38
CUX2-201ENST00000261726 VPS8Q8N3P4 1428 aa17.44■□□□□ 0.38
CUX2-201ENST00000261726 ANKRD30AQ9BXX3 1397 aa17.43■□□□□ 0.38
CUX2-201ENST00000261726 NEXNQ0ZGT2 675 aa17.43■□□□□ 0.38
CUX2-201ENST00000261726 TEFQ10587 303 aa17.43■□□□□ 0.38
CUX2-201ENST00000261726 EFCAB2Q5VUJ9 269 aa17.43■□□□□ 0.38
CUX2-201ENST00000261726 LRRFIP1Q32MZ4 808 aaKnown RBP17.42■□□□□ 0.38
CUX2-201ENST00000261726 FAM161AQ3B820 660 aa17.42■□□□□ 0.38
CUX2-201ENST00000261726 KLHL34Q8N239 644 aa17.42■□□□□ 0.38
CUX2-201ENST00000261726 IFIT2P09913 472 aaKnown RBP17.42■□□□□ 0.38
CUX2-201ENST00000261726 CENPQQ7L2Z9 268 aaPredicted RBP17.42■□□□□ 0.38
CUX2-201ENST00000261726 CFTRP13569 1480 aa17.42■□□□□ 0.38
CUX2-201ENST00000261726 RAD54L2Q9Y4B4 1467 aa17.42■□□□□ 0.38
CUX2-201ENST00000261726 RSPH6AQ9H0K4 717 aa17.41■□□□□ 0.38
CUX2-201ENST00000261726 RAB3GAP2Q9H2M9 1393 aa17.41■□□□□ 0.38
CUX2-201ENST00000261726 CT47A1Q5JQC4 288 aaPredicted RBP17.41■□□□□ 0.38
CUX2-201ENST00000261726 KANK4Q5T7N3 995 aaPredicted RBP17.41■□□□□ 0.38
CUX2-201ENST00000261726 RUFY2Q8WXA3 655 aa17.41■□□□□ 0.38
CUX2-201ENST00000261726 ZKSCAN1P17029 563 aaPredicted RBP17.41■□□□□ 0.38
CUX2-201ENST00000261726 COG3Q96JB2 828 aa17.41■□□□□ 0.38
CUX2-201ENST00000261726 PEG3Q9GZU2 1588 aa17.41■□□□□ 0.38
CUX2-201ENST00000261726 PDE3BQ13370 1112 aa17.4■□□□□ 0.38
CUX2-201ENST00000261726 TEX35Q5T0J7 233 aa17.4■□□□□ 0.38
CUX2-201ENST00000261726 ZKSCAN2Q63HK3 967 aa17.4■□□□□ 0.38
CUX2-201ENST00000261726 RUFY1Q96T51 708 aa17.4■□□□□ 0.38
CUX2-201ENST00000261726 HOOK1Q9UJC3 728 aaKnown RBP17.4■□□□□ 0.38
CUX2-201ENST00000261726 COG6Q9Y2V7 657 aa17.4■□□□□ 0.38
CUX2-201ENST00000261726 PDE4AP27815 886 aa17.39■□□□□ 0.38
CUX2-201ENST00000261726 TRDNQ13061 729 aa17.39■□□□□ 0.38
CUX2-201ENST00000261726 GSE1Q14687 1217 aa17.39■□□□□ 0.38
CUX2-201ENST00000261726 ODF2Q5BJF6 829 aa17.39■□□□□ 0.37
CUX2-201ENST00000261726 CRBNQ96SW2 442 aa17.39■□□□□ 0.37
CUX2-201ENST00000261726 FAM13BQ9NYF5 915 aa17.39■□□□□ 0.37
CUX2-201ENST00000261726 ERICH2A1L162 156 aa17.39■□□□□ 0.37
CUX2-201ENST00000261726 VPS37CA5D8V6 355 aaPredicted RBP17.39■□□□□ 0.37
CUX2-201ENST00000261726 PANK3Q9H999 370 aa17.38■□□□□ 0.37
CUX2-201ENST00000261726 CARMIL2Q6F5E8 1435 aa17.38■□□□□ 0.37
CUX2-201ENST00000261726 FYB1O15117 783 aa17.38■□□□□ 0.37
CUX2-201ENST00000261726 L3MBTL2Q969R5 705 aa17.38■□□□□ 0.37
CUX2-201ENST00000261726 TOP2BQ02880 1626 aa17.38■□□□□ 0.37
CUX2-201ENST00000261726 KDM4AO75164 1064 aa17.37■□□□□ 0.37
CUX2-201ENST00000261726 ZFYVE27Q5T4F4 411 aa17.37■□□□□ 0.37
CUX2-201ENST00000261726 EXOC6Q8TAG9 804 aa17.37■□□□□ 0.37
CUX2-201ENST00000261726 PHF23Q9BUL5 403 aaPredicted RBP17.37■□□□□ 0.37
CUX2-201ENST00000261726 CUX1P39880 1505 aa17.36■□□□□ 0.37
CUX2-201ENST00000261726 KIF15Q9NS87 1388 aa17.36■□□□□ 0.37
CUX2-201ENST00000261726 MEX3CQ5U5Q3 659 aaKnown RBP17.36■□□□□ 0.37
CUX2-201ENST00000261726 AK7Q96M32 723 aa17.36■□□□□ 0.37
CUX2-201ENST00000261726 SASS6Q6UVJ0 657 aa17.35■□□□□ 0.37
CUX2-201ENST00000261726 MTMR7Q9Y216 660 aa17.35■□□□□ 0.37
CUX2-201ENST00000261726 REC8O95072 547 aa17.35■□□□□ 0.37
CUX2-201ENST00000261726 AEBP2Q6ZN18 517 aaPredicted RBP17.35■□□□□ 0.37
CUX2-201ENST00000261726 MYBBP1AQ9BQG0 1328 aaKnown RBP17.35■□□□□ 0.37
CUX2-201ENST00000261726 PHLDB1Q86UU1 1377 aa17.34■□□□□ 0.37
CUX2-201ENST00000261726 HSP90AB2PQ58FF8 381 aa17.34■□□□□ 0.37
CUX2-201ENST00000261726 IFT57Q9NWB7 429 aa17.33■□□□□ 0.37
CUX2-201ENST00000261726 EPS15P42566 896 aa17.33■□□□□ 0.36
CUX2-201ENST00000261726 G3BP1Q13283 466 aaKnown RBP eCLIP17.33■□□□□ 0.36
CUX2-201ENST00000261726 RNF20Q5VTR2 975 aa17.33■□□□□ 0.36
CUX2-201ENST00000261726 E9PSI1 815 aa17.32■□□□□ 0.36
CUX2-201ENST00000261726 SKIDA1Q1XH10 827 aa17.32■□□□□ 0.36
CUX2-201ENST00000261726 SMC3Q9UQE7 1217 aa17.32■□□□□ 0.36
CUX2-201ENST00000261726 MNS1Q8NEH6 495 aa17.32■□□□□ 0.36
CUX2-201ENST00000261726 CDR1P51861 262 aa17.32■□□□□ 0.36
CUX2-201ENST00000261726 TTLL5Q6EMB2 1281 aa17.32■□□□□ 0.36
CUX2-201ENST00000261726 CCDC27Q2M243 656 aa17.31■□□□□ 0.36
CUX2-201ENST00000261726 PDILTQ8N807 584 aa17.31■□□□□ 0.36
CUX2-201ENST00000261726 R3HCC1Q9Y3T6 440 aaKnown RBP17.31■□□□□ 0.36
CUX2-201ENST00000261726 RRP1P56182 461 aaKnown RBP17.31■□□□□ 0.36
CUX2-201ENST00000261726 RBM33Q96EV2 1170 aaKnown RBP17.31■□□□□ 0.36
CUX2-201ENST00000261726 CGNL1Q0VF96 1302 aa17.31■□□□□ 0.36
CUX2-201ENST00000261726 MINK1Q8N4C8 1332 aaPredicted RBP17.3■□□□□ 0.36
CUX2-201ENST00000261726 SAFBQ15424 915 aaKnown RBP eCLIP17.3■□□□□ 0.36
CUX2-201ENST00000261726 FKBP5Q13451 457 aaPredicted RBP17.3■□□□□ 0.36
CUX2-201ENST00000261726 FHOD3Q2V2M9 1422 aa17.29■□□□□ 0.36
CUX2-201ENST00000261726 ST20-MTHFSA0A0A6YYL1 179 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 80.6 ms