RNA–Protein interactions for RNA: ENST00000260563.4

RTCA-201, Transcript of RNA 3'-terminal phosphate cyclase, humanhuman

TSL 1 (best) BASIC

Gene RTCA, Length 1,534 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTCA-201ENST00000260563 RIMS2Q9UQ26 1411 aa30.04■■■□□ 2.4
RTCA-201ENST00000260563 SCAF11Q99590 1463 aaKnown RBP30.02■■■□□ 2.4
RTCA-201ENST00000260563 SIN3AQ96ST3 1273 aa30.01■■■□□ 2.4
RTCA-201ENST00000260563 RGL3Q3MIN7 710 aa30■■■□□ 2.39
RTCA-201ENST00000260563 ZEB1P37275 1124 aaPredicted RBP29.99■■■□□ 2.39
RTCA-201ENST00000260563 EID1Q9Y6B2 187 aa29.99■■■□□ 2.39
RTCA-201ENST00000260563 ANKLE2Q86XL3 938 aa29.98■■■□□ 2.39
RTCA-201ENST00000260563 IQGAP1P46940 1657 aa29.98■■■□□ 2.39
RTCA-201ENST00000260563 NEUROD1Q13562 356 aa29.97■■■□□ 2.39
RTCA-201ENST00000260563 RPGRIP1LQ68CZ1 1315 aa29.97■■■□□ 2.39
RTCA-201ENST00000260563 HDGFP51858 240 aaKnown RBP29.96■■■□□ 2.39
RTCA-201ENST00000260563 TXNDC2Q86VQ3 553 aa29.95■■■□□ 2.38
RTCA-201ENST00000260563 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.95■■■□□ 2.38
RTCA-201ENST00000260563 NCKAP5LQ9HCH0 1330 aa29.94■■■□□ 2.38
RTCA-201ENST00000260563 MED14O60244 1454 aa29.93■■■□□ 2.38
RTCA-201ENST00000260563 PPP1R15AO75807 674 aaPredicted RBP29.93■■■□□ 2.38
RTCA-201ENST00000260563 LTKP29376 864 aa29.93■■■□□ 2.38
RTCA-201ENST00000260563 NUTM2DQ5VT03 806 aaPredicted RBP29.91■■■□□ 2.38
RTCA-201ENST00000260563 MYOM2P54296 1465 aa29.91■■■□□ 2.38
RTCA-201ENST00000260563 NPHP4O75161 1426 aaPredicted RBP29.9■■■□□ 2.38
RTCA-201ENST00000260563 PLEKHG1Q9ULL1 1385 aa29.88■■■□□ 2.37
RTCA-201ENST00000260563 NRXN3Q9Y4C0 1643 aa29.87■■■□□ 2.37
RTCA-201ENST00000260563 TONSLQ96HA7 1378 aa29.86■■■□□ 2.37
RTCA-201ENST00000260563 SETBP1Q9Y6X0 1596 aa29.86■■■□□ 2.37
RTCA-201ENST00000260563 VGFO15240 615 aaPredicted RBP29.86■■■□□ 2.37
RTCA-201ENST00000260563 DCAF11Q8TEB1 546 aa29.83■■■□□ 2.37
RTCA-201ENST00000260563 DIP2AQ14689 1571 aa29.83■■■□□ 2.37
RTCA-201ENST00000260563 NRXN1Q9ULB1 1477 aa29.81■■■□□ 2.36
RTCA-201ENST00000260563 DMRT2Q9Y5R5 561 aa29.81■■■□□ 2.36
RTCA-201ENST00000260563 SETD1AO15047 1707 aaKnown RBP29.8■■■□□ 2.36
RTCA-201ENST00000260563 BCANQ96GW7 911 aa29.8■■■□□ 2.36
RTCA-201ENST00000260563 LAMC1P11047 1609 aa29.8■■■□□ 2.36
RTCA-201ENST00000260563 ADGRF5Q8IZF2 1346 aa29.79■■■□□ 2.36
RTCA-201ENST00000260563 L3MBTL2Q969R5 705 aa29.79■■■□□ 2.36
RTCA-201ENST00000260563 PIK3C2GO75747 1445 aa29.79■■■□□ 2.36
RTCA-201ENST00000260563 STAC3Q96MF2 364 aa29.78■■■□□ 2.36
RTCA-201ENST00000260563 SENP3Q9H4L4 574 aaPredicted RBP29.78■■■□□ 2.36
RTCA-201ENST00000260563 KDM2AQ9Y2K7 1162 aa29.77■■■□□ 2.36
RTCA-201ENST00000260563 TIMELESSQ9UNS1 1208 aa29.76■■■□□ 2.35
RTCA-201ENST00000260563 ADAMTS13Q76LX8 1427 aa29.75■■■□□ 2.35
RTCA-201ENST00000260563 ALKQ9UM73 1620 aa29.74■■■□□ 2.35
RTCA-201ENST00000260563 KIAA1210Q9ULL0 1709 aa29.71■■■□□ 2.35
RTCA-201ENST00000260563 PRAG1Q86YV5 1406 aa29.71■■■□□ 2.35
RTCA-201ENST00000260563 SLC26A8Q96RN1 970 aa29.7■■■□□ 2.34
RTCA-201ENST00000260563 CHD2O14647 1828 aaKnown RBP29.68■■■□□ 2.34
RTCA-201ENST00000260563 TRPM1Q7Z4N2 1603 aa29.66■■■□□ 2.34
RTCA-201ENST00000260563 TBX22Q9Y458 520 aa29.65■■■□□ 2.34
RTCA-201ENST00000260563 NWD1Q149M9 1564 aa29.64■■■□□ 2.34
RTCA-201ENST00000260563 STRCP1A6NGW2 1772 aa29.63■■■□□ 2.33
RTCA-201ENST00000260563 ASXL1Q8IXJ9 1541 aa29.62■■■□□ 2.33
RTCA-201ENST00000260563 PIK3R4Q99570 1358 aa29.62■■■□□ 2.33
RTCA-201ENST00000260563 XRN1Q8IZH2 1706 aaKnown RBP29.6■■■□□ 2.33
RTCA-201ENST00000260563 C14orf93Q9H972 538 aaKnown RBP29.6■■■□□ 2.33
RTCA-201ENST00000260563 METP08581 1390 aa29.59■■■□□ 2.33
RTCA-201ENST00000260563 CFAP70Q5T0N1 1121 aa29.59■■■□□ 2.33
RTCA-201ENST00000260563 KNDC1Q76NI1 1749 aa29.58■■■□□ 2.33
RTCA-201ENST00000260563 ADGRB1O14514 1584 aa29.57■■■□□ 2.32
RTCA-201ENST00000260563 ZNF335Q9H4Z2 1342 aaPredicted RBP29.55■■■□□ 2.32
RTCA-201ENST00000260563 PTPRUQ92729 1446 aa29.54■■■□□ 2.32
RTCA-201ENST00000260563 NBPF8Q3BBV2 869 aa29.53■■■□□ 2.32
RTCA-201ENST00000260563 NKTRP30414 1462 aaKnown RBP29.53■■■□□ 2.32
RTCA-201ENST00000260563 RALGAPBQ86X10 1494 aa29.52■■■□□ 2.32
RTCA-201ENST00000260563 CPS1P31327 1500 aa29.51■■■□□ 2.31
RTCA-201ENST00000260563 LTBP4Q8N2S1 1624 aa29.51■■■□□ 2.31
RTCA-201ENST00000260563 KCNA6P17658 529 aa29.5■■■□□ 2.31
RTCA-201ENST00000260563 TMEM132EQ6IEE7 984 aa29.5■■■□□ 2.31
RTCA-201ENST00000260563 YTHDC2Q9H6S0 1430 aaKnown RBP29.5■■■□□ 2.31
RTCA-201ENST00000260563 ROCK2O75116 1388 aaKnown RBP29.48■■■□□ 2.31
RTCA-201ENST00000260563 AMOTL2Q9Y2J4 779 aa29.47■■■□□ 2.31
RTCA-201ENST00000260563 LRPPRCP42704 1394 aaKnown RBP29.47■■■□□ 2.31
RTCA-201ENST00000260563 ARHGEF28Q8N1W1 1705 aaKnown RBP29.46■■■□□ 2.31
RTCA-201ENST00000260563 PTCH1Q13635 1447 aa29.45■■■□□ 2.31
RTCA-201ENST00000260563 TECPR2O15040 1411 aa29.44■■■□□ 2.3
RTCA-201ENST00000260563 XIRP1Q702N8 1843 aaKnown RBP29.44■■■□□ 2.3
RTCA-201ENST00000260563 NBPF1Q3BBV0 1214 aa29.44■■■□□ 2.3
RTCA-201ENST00000260563 DLC1Q96QB1 1528 aa29.42■■■□□ 2.3
RTCA-201ENST00000260563 GPRASP1Q5JY77 1395 aa29.41■■■□□ 2.3
RTCA-201ENST00000260563 STK26Q9P289 416 aa29.41■■■□□ 2.3
RTCA-201ENST00000260563 ABCC11Q96J66 1382 aa29.41■■■□□ 2.3
RTCA-201ENST00000260563 LRRC7Q96NW7 1537 aa29.4■■■□□ 2.3
RTCA-201ENST00000260563 ROBO2Q9HCK4 1378 aa29.37■■■□□ 2.29
RTCA-201ENST00000260563 NALCNQ8IZF0 1738 aa29.35■■■□□ 2.29
RTCA-201ENST00000260563 PROSER2Q86WR7 435 aaPredicted RBP29.35■■■□□ 2.29
RTCA-201ENST00000260563 CARD11Q9BXL7 1154 aa29.35■■■□□ 2.29
RTCA-201ENST00000260563 TRAK1Q9UPV9 953 aa29.35■■■□□ 2.29
RTCA-201ENST00000260563 FAM135BQ49AJ0 1406 aa29.34■■■□□ 2.29
RTCA-201ENST00000260563 TMEM94Q12767 1356 aa29.32■■■□□ 2.28
RTCA-201ENST00000260563 QRICH2Q9H0J4 1663 aa29.31■■■□□ 2.28
RTCA-201ENST00000260563 EIF3AQ14152 1382 aaKnown RBP29.3■■■□□ 2.28
RTCA-201ENST00000260563 SIRT1Q96EB6 747 aa29.29■■■□□ 2.28
RTCA-201ENST00000260563 NCOA3Q9Y6Q9 1424 aa29.29■■■□□ 2.28
RTCA-201ENST00000260563 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.29■■■□□ 2.28
RTCA-201ENST00000260563 IQSEC2Q5JU85 1478 aa29.28■■■□□ 2.28
RTCA-201ENST00000260563 PLEKHH1Q9ULM0 1364 aa29.27■■■□□ 2.28
RTCA-201ENST00000260563 RBM33Q96EV2 1170 aaKnown RBP29.27■■■□□ 2.28
RTCA-201ENST00000260563 PRAM1Q96QH2 718 aa29.26■■■□□ 2.27
RTCA-201ENST00000260563 WAPLQ7Z5K2 1190 aa29.25■■■□□ 2.27
RTCA-201ENST00000260563 POGKQ9P215 609 aa29.25■■■□□ 2.27
RTCA-201ENST00000260563 ADGRL3Q9HAR2 1447 aa29.25■■■□□ 2.27
RTCA-201ENST00000260563 C14orf37Q86TY3 774 aa29.24■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms