RNA–Protein interactions for RNA: ENST00000252108.7

UBE4A-201, Transcript of ubiquitination factor E4A, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene UBE4A, Length 6,103 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4A-201ENST00000252108 DIP2BQ9P265 1576 aa5.71□□□□□ -1.5
UBE4A-201ENST00000252108 CCDC144AA2RUR9 1427 aa5.71□□□□□ -1.5
UBE4A-201ENST00000252108 PIK3C2GO75747 1445 aa5.71□□□□□ -1.5
UBE4A-201ENST00000252108 ASXL2Q76L83 1435 aa5.71□□□□□ -1.5
UBE4A-201ENST00000252108 EIF4G2P78344 907 aaKnown RBP eCLIP5.71□□□□□ -1.53e-10■■■■■ 43
UBE4A-201ENST00000252108 PKD2Q13563 968 aa5.71□□□□□ -1.5
UBE4A-201ENST00000252108 NEO1Q92859 1461 aa5.7□□□□□ -1.5
UBE4A-201ENST00000252108 KNDC1Q76NI1 1749 aa5.7□□□□□ -1.5
UBE4A-201ENST00000252108 IQSEC2Q5JU85 1478 aa5.7□□□□□ -1.5
UBE4A-201ENST00000252108 PLEKHD1A6NEE1 506 aa5.69□□□□□ -1.5
UBE4A-201ENST00000252108 HNRNPMP52272 730 aaKnown RBP eCLIP5.69□□□□□ -1.5
UBE4A-201ENST00000252108 PNISRQ8TF01 805 aaKnown RBP5.69□□□□□ -1.5
UBE4A-201ENST00000252108 NLRP1Q9C000 1473 aa5.69□□□□□ -1.5
UBE4A-201ENST00000252108 AGLP35573 1532 aa5.69□□□□□ -1.5
UBE4A-201ENST00000252108 SLC4A1APQ9BWU0 796 aaKnown RBP5.68□□□□□ -1.5
UBE4A-201ENST00000252108 ZNF521Q96K83 1311 aa5.68□□□□□ -1.5
UBE4A-201ENST00000252108 CDC42BPGQ6DT37 1551 aa5.68□□□□□ -1.5
UBE4A-201ENST00000252108 BRD4O60885 1362 aaPredicted RBP5.68□□□□□ -1.5
UBE4A-201ENST00000252108 ZFYVE9O95405 1425 aa5.68□□□□□ -1.5
UBE4A-201ENST00000252108 SCAF11Q99590 1463 aaKnown RBP5.68□□□□□ -1.5
UBE4A-201ENST00000252108 TULP4Q9NRJ4 1543 aa5.68□□□□□ -1.5
UBE4A-201ENST00000252108 NPATQ14207 1427 aa5.68□□□□□ -1.5
UBE4A-201ENST00000252108 ADGRL1O94910 1474 aa5.68□□□□□ -1.5
UBE4A-201ENST00000252108 PLPPR3Q6T4P5 718 aa5.68□□□□□ -1.5
UBE4A-201ENST00000252108 WASHC2CQ9Y4E1 1318 aa5.67□□□□□ -1.5
UBE4A-201ENST00000252108 USP54Q70EL1 1684 aa5.67□□□□□ -1.5
UBE4A-201ENST00000252108 FKBP8Q14318 412 aa5.67□□□□□ -1.5
UBE4A-201ENST00000252108 SPATA31D1Q6ZQQ2 1576 aa5.67□□□□□ -1.5
UBE4A-201ENST00000252108 NRKQ7Z2Y5 1582 aa5.67□□□□□ -1.5
UBE4A-201ENST00000252108 TOPAZ1Q8N9V7 1692 aa5.66□□□□□ -1.5
UBE4A-201ENST00000252108 COL3A1P02461 1466 aaPredicted RBP5.66□□□□□ -1.5
UBE4A-201ENST00000252108 CD163L1Q9NR16 1453 aa5.66□□□□□ -1.5
UBE4A-201ENST00000252108 MARF1Q9Y4F3 1742 aaKnown RBP5.65□□□□□ -1.5
UBE4A-201ENST00000252108 RTL5Q5HYW3 569 aaPredicted RBP5.65□□□□□ -1.5
UBE4A-201ENST00000252108 RIMS1Q86UR5 1692 aaKnown RBP5.65□□□□□ -1.51
UBE4A-201ENST00000252108 PTPRMP28827 1452 aa5.65□□□□□ -1.51
UBE4A-201ENST00000252108 NALCNQ8IZF0 1738 aa5.64□□□□□ -1.51
UBE4A-201ENST00000252108 AKAP12Q02952 1782 aa5.64□□□□□ -1.51
UBE4A-201ENST00000252108 ARID3CA6NKF2 412 aa5.64□□□□□ -1.51
UBE4A-201ENST00000252108 MON2Q7Z3U7 1717 aa5.64□□□□□ -1.51
UBE4A-201ENST00000252108 NBPF1Q3BBV0 1214 aa5.64□□□□□ -1.51
UBE4A-201ENST00000252108 KIF20BQ96Q89 1820 aa5.64□□□□□ -1.51
UBE4A-201ENST00000252108 STAC3Q96MF2 364 aa5.63□□□□□ -1.51
UBE4A-201ENST00000252108 DLC1Q96QB1 1528 aa5.63□□□□□ -1.51
UBE4A-201ENST00000252108 TRMT2AQ8IZ69 625 aaKnown RBP5.63□□□□□ -1.51
UBE4A-201ENST00000252108 BCANQ96GW7 911 aa5.63□□□□□ -1.51
UBE4A-201ENST00000252108 AMER1Q5JTC6 1135 aaPredicted RBP5.62□□□□□ -1.51
UBE4A-201ENST00000252108 ARHGEF40Q8TER5 1519 aa5.62□□□□□ -1.51
UBE4A-201ENST00000252108 MED14O60244 1454 aa5.62□□□□□ -1.51
UBE4A-201ENST00000252108 RGPD1P0DJD0 1748 aa5.62□□□□□ -1.51
UBE4A-201ENST00000252108 ST20-MTHFSA0A0A6YYL1 179 aa5.62□□□□□ -1.51
UBE4A-201ENST00000252108 C3P01024 1663 aa5.62□□□□□ -1.51
UBE4A-201ENST00000252108 ANP32AP39687 249 aaKnown RBP5.61□□□□□ -1.51
UBE4A-201ENST00000252108 PHF23Q9BUL5 403 aaPredicted RBP5.61□□□□□ -1.51
UBE4A-201ENST00000252108 MYBBP1AQ9BQG0 1328 aaKnown RBP5.61□□□□□ -1.51
UBE4A-201ENST00000252108 TRIM52Q96A61 297 aa5.61□□□□□ -1.51
UBE4A-201ENST00000252108 PPP4R2Q9NY27 417 aa5.6□□□□□ -1.51
UBE4A-201ENST00000252108 UBR1Q8IWV7 1749 aa5.6□□□□□ -1.51
UBE4A-201ENST00000252108 MSH5O43196 834 aa5.6□□□□□ -1.51
UBE4A-201ENST00000252108 EFCAB2Q5VUJ9 269 aa5.6□□□□□ -1.51
UBE4A-201ENST00000252108 CPS1P31327 1500 aa5.6□□□□□ -1.51
UBE4A-201ENST00000252108 N4BP2Q86UW6 1770 aaPredicted RBP5.59□□□□□ -1.51
UBE4A-201ENST00000252108 FANCIQ9NVI1 1328 aa5.59□□□□□ -1.51
UBE4A-201ENST00000252108 TSPY4P0CV99 314 aa5.59□□□□□ -1.52
UBE4A-201ENST00000252108 TSPY10P0CW01 314 aa5.59□□□□□ -1.52
UBE4A-201ENST00000252108 HNRNPUQ00839 825 aaKnown RBP eCLIP5.59□□□□□ -1.52
UBE4A-201ENST00000252108 ESF1Q9H501 851 aaKnown RBP5.59□□□□□ -1.52
UBE4A-201ENST00000252108 RALBP1Q15311 655 aa5.59□□□□□ -1.52
UBE4A-201ENST00000252108 PLEKHH1Q9ULM0 1364 aa5.58□□□□□ -1.52
UBE4A-201ENST00000252108 ALKQ9UM73 1620 aa5.58□□□□□ -1.52
UBE4A-201ENST00000252108 AFAP1Q8N556 730 aa5.58□□□□□ -1.52
UBE4A-201ENST00000252108 KANK1Q14678 1352 aa5.58□□□□□ -1.52
UBE4A-201ENST00000252108 DAXXQ9UER7 740 aaPredicted RBP5.58□□□□□ -1.52
UBE4A-201ENST00000252108 TUBGCP6Q96RT7 1819 aa5.58□□□□□ -1.52
UBE4A-201ENST00000252108 YEATS2Q9ULM3 1422 aa5.57□□□□□ -1.52
UBE4A-201ENST00000252108 RBM19Q9Y4C8 960 aaKnown RBP5.57□□□□□ -1.52
UBE4A-201ENST00000252108 CD109Q6YHK3 1445 aa5.57□□□□□ -1.52
UBE4A-201ENST00000252108 PUS7Q96PZ0 661 aaKnown RBP5.57□□□□□ -1.52
UBE4A-201ENST00000252108 TECPR2O15040 1411 aa5.57□□□□□ -1.52
UBE4A-201ENST00000252108 NUDCQ9Y266 331 aa5.57□□□□□ -1.52
UBE4A-201ENST00000252108 LRRC7Q96NW7 1537 aa5.56□□□□□ -1.52
UBE4A-201ENST00000252108 DCAF11Q8TEB1 546 aa5.56□□□□□ -1.52
UBE4A-201ENST00000252108 POLR3AO14802 1390 aaPredicted RBP5.56□□□□□ -1.52
UBE4A-201ENST00000252108 SPAG9O60271 1321 aaKnown RBP5.56□□□□□ -1.52
UBE4A-201ENST00000252108 FBLN2P98095 1184 aa5.56□□□□□ -1.52
UBE4A-201ENST00000252108 NCBP3Q53F19 620 aaKnown RBP5.56□□□□□ -1.52
UBE4A-201ENST00000252108 ADGRF5Q8IZF2 1346 aa5.56□□□□□ -1.52
UBE4A-201ENST00000252108 CARD11Q9BXL7 1154 aa5.56□□□□□ -1.52
UBE4A-201ENST00000252108 ZNF777Q9ULD5 760 aaPredicted RBP5.56□□□□□ -1.52
UBE4A-201ENST00000252108 CARD14Q9BXL6 1004 aa5.55□□□□□ -1.52
UBE4A-201ENST00000252108 BCL11AQ9H165 835 aa5.55□□□□□ -1.52
UBE4A-201ENST00000252108 DLG5Q8TDM6 1919 aa5.55□□□□□ -1.52
UBE4A-201ENST00000252108 KDM2BQ8NHM5 1336 aa5.55□□□□□ -1.52
UBE4A-201ENST00000252108 LRRC37A3O60309 1634 aa5.55□□□□□ -1.52
UBE4A-201ENST00000252108 XRN1Q8IZH2 1706 aaKnown RBP5.55□□□□□ -1.52
UBE4A-201ENST00000252108 SIPA1L2Q9P2F8 1722 aaPredicted RBP5.55□□□□□ -1.52
UBE4A-201ENST00000252108 A2ML1A8K2U0 1454 aa5.54□□□□□ -1.52
UBE4A-201ENST00000252108 PNPLA6Q8IY17 1366 aa5.54□□□□□ -1.52
UBE4A-201ENST00000252108 NLRP13Q86W25 1043 aa5.54□□□□□ -1.52
UBE4A-201ENST00000252108 C14orf93Q9H972 538 aaKnown RBP5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms