RNA–Protein interactions for RNA: ENST00000217402.2

CHMP4B-201, Transcript of charged multivesicular body protein 4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4B, Length 1,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4B-201ENST00000217402 DCAF11Q8TEB1 546 aa39.32■■■■□ 3.88
CHMP4B-201ENST00000217402 SLIT1O75093 1534 aa39.31■■■■□ 3.88
CHMP4B-201ENST00000217402 ZFYVE9O95405 1425 aa39.31■■■■□ 3.88
CHMP4B-201ENST00000217402 RPGRIP1LQ68CZ1 1315 aa39.31■■■■□ 3.88
CHMP4B-201ENST00000217402 ARHGAP23Q9P227 1491 aa39.3■■■■□ 3.88
CHMP4B-201ENST00000217402 PPLO60437 1756 aa39.29■■■■□ 3.88
CHMP4B-201ENST00000217402 KDM2AQ9Y2K7 1162 aa39.29■■■■□ 3.88
CHMP4B-201ENST00000217402 IFT172Q9UG01 1749 aa39.28■■■■□ 3.88
CHMP4B-201ENST00000217402 PPP1R15AO75807 674 aaPredicted RBP39.24■■■■□ 3.87
CHMP4B-201ENST00000217402 TXNDC2Q86VQ3 553 aa39.23■■■■□ 3.87
CHMP4B-201ENST00000217402 EID1Q9Y6B2 187 aa39.23■■■■□ 3.87
CHMP4B-201ENST00000217402 LTKP29376 864 aa39.22■■■■□ 3.87
CHMP4B-201ENST00000217402 TIMELESSQ9UNS1 1208 aa39.22■■■■□ 3.87
CHMP4B-201ENST00000217402 ABCF1Q8NE71 845 aaKnown RBP eCLIP39.22■■■■□ 3.87
CHMP4B-201ENST00000217402 HDGFP51858 240 aaKnown RBP39.21■■■■□ 3.87
CHMP4B-201ENST00000217402 SENP3Q9H4L4 574 aaPredicted RBP39.21■■■■□ 3.87
CHMP4B-201ENST00000217402 SCAF11Q99590 1463 aaKnown RBP39.2■■■■□ 3.87
CHMP4B-201ENST00000217402 MYOM2P54296 1465 aa39.19■■■■□ 3.86
CHMP4B-201ENST00000217402 ADGRF5Q8IZF2 1346 aa39.18■■■■□ 3.86
CHMP4B-201ENST00000217402 VGFO15240 615 aaPredicted RBP39.18■■■■□ 3.86
CHMP4B-201ENST00000217402 ANKLE2Q86XL3 938 aa39.18■■■■□ 3.86
CHMP4B-201ENST00000217402 NCKAP5LQ9HCH0 1330 aa39.13■■■■□ 3.85
CHMP4B-201ENST00000217402 POLR1AO95602 1720 aaPredicted RBP39.12■■■■□ 3.85
CHMP4B-201ENST00000217402 STAC3Q96MF2 364 aa39.11■■■■□ 3.85
CHMP4B-201ENST00000217402 NRXN1Q9ULB1 1477 aa39.09■■■■□ 3.85
CHMP4B-201ENST00000217402 PRAG1Q86YV5 1406 aa39.08■■■■□ 3.85
CHMP4B-201ENST00000217402 BCANQ96GW7 911 aa39.08■■■■□ 3.85
CHMP4B-201ENST00000217402 PLEKHG1Q9ULL1 1385 aa39.08■■■■□ 3.85
CHMP4B-201ENST00000217402 PIK3C2GO75747 1445 aa39.07■■■■□ 3.84
CHMP4B-201ENST00000217402 NPHP4O75161 1426 aaPredicted RBP39.03■■■■□ 3.84
CHMP4B-201ENST00000217402 NBPF8Q3BBV2 869 aa39.02■■■■□ 3.84
CHMP4B-201ENST00000217402 STRCQ7RTU9 1775 aa39.01■■■■□ 3.84
CHMP4B-201ENST00000217402 IQGAP1P46940 1657 aa39.01■■■■□ 3.84
CHMP4B-201ENST00000217402 MED14O60244 1454 aa39■■■■□ 3.83
CHMP4B-201ENST00000217402 NRXN3Q9Y4C0 1643 aa39■■■■□ 3.83
CHMP4B-201ENST00000217402 SETBP1Q9Y6X0 1596 aa39■■■■□ 3.83
CHMP4B-201ENST00000217402 ZEB1P37275 1124 aaPredicted RBP38.97■■■■□ 3.83
CHMP4B-201ENST00000217402 CFAP70Q5T0N1 1121 aa38.95■■■■□ 3.83
CHMP4B-201ENST00000217402 SLC26A8Q96RN1 970 aa38.95■■■■□ 3.83
CHMP4B-201ENST00000217402 ADAMTS13Q76LX8 1427 aa38.94■■■■□ 3.82
CHMP4B-201ENST00000217402 ALKQ9UM73 1620 aa38.93■■■■□ 3.82
CHMP4B-201ENST00000217402 C14orf93Q9H972 538 aaKnown RBP38.9■■■■□ 3.82
CHMP4B-201ENST00000217402 LAMC1P11047 1609 aa38.9■■■■□ 3.82
CHMP4B-201ENST00000217402 TRPM1Q7Z4N2 1603 aa38.9■■■■□ 3.82
CHMP4B-201ENST00000217402 DIP2AQ14689 1571 aa38.86■■■■□ 3.81
CHMP4B-201ENST00000217402 SETD1AO15047 1707 aaKnown RBP38.86■■■■□ 3.81
CHMP4B-201ENST00000217402 KIAA1210Q9ULL0 1709 aa38.85■■■■□ 3.81
CHMP4B-201ENST00000217402 RALGAPBQ86X10 1494 aa38.85■■■■□ 3.81
CHMP4B-201ENST00000217402 NBPF1Q3BBV0 1214 aa38.84■■■■□ 3.81
CHMP4B-201ENST00000217402 TBX22Q9Y458 520 aa38.82■■■■□ 3.81
CHMP4B-201ENST00000217402 ROCK2O75116 1388 aaKnown RBP38.82■■■■□ 3.81
CHMP4B-201ENST00000217402 METP08581 1390 aa38.81■■■■□ 3.8
CHMP4B-201ENST00000217402 TMEM132EQ6IEE7 984 aa38.81■■■■□ 3.8
CHMP4B-201ENST00000217402 ASXL1Q8IXJ9 1541 aa38.81■■■■□ 3.8
CHMP4B-201ENST00000217402 ADGRB1O14514 1584 aa38.78■■■■□ 3.8
CHMP4B-201ENST00000217402 DMRT2Q9Y5R5 561 aa38.77■■■■□ 3.8
CHMP4B-201ENST00000217402 GPRASP1Q5JY77 1395 aa38.71■■■■□ 3.79
CHMP4B-201ENST00000217402 CARD11Q9BXL7 1154 aa38.71■■■■□ 3.79
CHMP4B-201ENST00000217402 STK26Q9P289 416 aa38.7■■■■□ 3.79
CHMP4B-201ENST00000217402 PTPRUQ92729 1446 aa38.69■■■■□ 3.78
CHMP4B-201ENST00000217402 YTHDC2Q9H6S0 1430 aaKnown RBP38.69■■■■□ 3.78
CHMP4B-201ENST00000217402 PIK3R4Q99570 1358 aa38.68■■■■□ 3.78
CHMP4B-201ENST00000217402 LRPPRCP42704 1394 aaKnown RBP38.65■■■■□ 3.78
CHMP4B-201ENST00000217402 AMOTL2Q9Y2J4 779 aa38.63■■■■□ 3.77
CHMP4B-201ENST00000217402 TRAK1Q9UPV9 953 aa38.62■■■■□ 3.77
CHMP4B-201ENST00000217402 CHD2O14647 1828 aaKnown RBP38.61■■■■□ 3.77
CHMP4B-201ENST00000217402 XRN1Q8IZH2 1706 aaKnown RBP38.59■■■■□ 3.77
CHMP4B-201ENST00000217402 NWD1Q149M9 1564 aa38.57■■■■□ 3.77
CHMP4B-201ENST00000217402 ZNF335Q9H4Z2 1342 aaPredicted RBP38.57■■■■□ 3.77
CHMP4B-201ENST00000217402 KCNA6P17658 529 aa38.57■■■■□ 3.77
CHMP4B-201ENST00000217402 ABCC11Q96J66 1382 aa38.57■■■■□ 3.76
CHMP4B-201ENST00000217402 KNDC1Q76NI1 1749 aa38.55■■■■□ 3.76
CHMP4B-201ENST00000217402 TECPR2O15040 1411 aa38.54■■■■□ 3.76
CHMP4B-201ENST00000217402 USP47Q96K76 1375 aa38.53■■■■□ 3.76
CHMP4B-201ENST00000217402 STRCP1A6NGW2 1772 aa38.53■■■■□ 3.76
CHMP4B-201ENST00000217402 CPS1P31327 1500 aa38.52■■■■□ 3.76
CHMP4B-201ENST00000217402 ROBO2Q9HCK4 1378 aa38.52■■■■□ 3.76
CHMP4B-201ENST00000217402 ARHGEF28Q8N1W1 1705 aaKnown RBP38.51■■■■□ 3.75
CHMP4B-201ENST00000217402 DLC1Q96QB1 1528 aa38.5■■■■□ 3.75
CHMP4B-201ENST00000217402 PTCH1Q13635 1447 aa38.49■■■■□ 3.75
CHMP4B-201ENST00000217402 EIF3AQ14152 1382 aaKnown RBP38.48■■■■□ 3.75
CHMP4B-201ENST00000217402 PRAM1Q96QH2 718 aa38.47■■■■□ 3.75
CHMP4B-201ENST00000217402 NKTRP30414 1462 aaKnown RBP38.47■■■■□ 3.75
CHMP4B-201ENST00000217402 WAPLQ7Z5K2 1190 aa38.45■■■■□ 3.75
CHMP4B-201ENST00000217402 PLEKHH1Q9ULM0 1364 aa38.44■■■■□ 3.74
CHMP4B-201ENST00000217402 EIF4G2P78344 907 aaKnown RBP eCLIP38.44■■■■□ 3.74
CHMP4B-201ENST00000217402 SAFB2Q14151 953 aaKnown RBP eCLIP38.44■■■■□ 3.74
CHMP4B-201ENST00000217402 POGKQ9P215 609 aa38.44■■■■□ 3.74
CHMP4B-201ENST00000217402 FAM135BQ49AJ0 1406 aa38.43■■■■□ 3.74
CHMP4B-201ENST00000217402 RBM33Q96EV2 1170 aaKnown RBP38.41■■■■□ 3.74
CHMP4B-201ENST00000217402 CENPJQ9HC77 1338 aaPredicted RBP38.4■■■■□ 3.74
CHMP4B-201ENST00000217402 HSPA5P11021 654 aaKnown RBP38.4■■■■□ 3.74
CHMP4B-201ENST00000217402 PROSER2Q86WR7 435 aaPredicted RBP38.4■■■■□ 3.74
CHMP4B-201ENST00000217402 ST20-MTHFSA0A0A6YYL1 179 aa38.39■■■■□ 3.74
CHMP4B-201ENST00000217402 SIRT1Q96EB6 747 aa38.39■■■■□ 3.74
CHMP4B-201ENST00000217402 HIRIP3Q9BW71 556 aaPredicted RBP38.37■■■■□ 3.73
CHMP4B-201ENST00000217402 QRICH2Q9H0J4 1663 aa38.35■■■■□ 3.73
CHMP4B-201ENST00000217402 LTBP4Q8N2S1 1624 aa38.33■■■■□ 3.73
CHMP4B-201ENST00000217402 TMEM94Q12767 1356 aa38.33■■■■□ 3.73
CHMP4B-201ENST00000217402 LRRC7Q96NW7 1537 aa38.32■■■■□ 3.73
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms