RNA–Protein interactions for RNA: ENST00000191018.9

CTSA-201, Transcript of cathepsin A, humanhuman

TSL 1 (best) BASIC

Gene CTSA, Length 1,898 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-201ENST00000191018 PRKRIP1Q9H875 184 aaPredicted RBP25.72■■□□□ 1.71
CTSA-201ENST00000191018 SCAF11Q99590 1463 aaKnown RBP25.7■■□□□ 1.7
CTSA-201ENST00000191018 ADGRF5Q8IZF2 1346 aa25.69■■□□□ 1.7
CTSA-201ENST00000191018 PPP6R1Q9UPN7 881 aa25.68■■□□□ 1.7
CTSA-201ENST00000191018 POLR3GLQ9BT43 218 aa25.67■■□□□ 1.7
CTSA-201ENST00000191018 RPGRIP1LQ68CZ1 1315 aa25.66■■□□□ 1.7
CTSA-201ENST00000191018 CLTCQ00610 1675 aaKnown RBP25.63■■□□□ 1.69
CTSA-201ENST00000191018 DISP3Q9P2K9 1392 aa25.63■■□□□ 1.69
CTSA-201ENST00000191018 SETBP1Q9Y6X0 1596 aa25.63■■□□□ 1.69
CTSA-201ENST00000191018 CHGAP10645 457 aaKnown RBP25.63■■□□□ 1.69
CTSA-201ENST00000191018 PIK3C2GO75747 1445 aa25.63■■□□□ 1.69
CTSA-201ENST00000191018 SLC52A1Q9NWF4 448 aa25.62■■□□□ 1.69
CTSA-201ENST00000191018 NEXMIFQ5QGS0 1516 aa25.62■■□□□ 1.69
CTSA-201ENST00000191018 CFAP70Q5T0N1 1121 aa25.61■■□□□ 1.69
CTSA-201ENST00000191018 ERVK-7P63135 1459 aa25.6■■□□□ 1.69
CTSA-201ENST00000191018 TMEM131LA2VDJ0 1609 aa25.59■■□□□ 1.69
CTSA-201ENST00000191018 TMF1P82094 1093 aa25.59■■□□□ 1.69
CTSA-201ENST00000191018 IDI1Q13907 227 aa25.59■■□□□ 1.69
CTSA-201ENST00000191018 MYO5BQ9ULV0 1848 aa25.59■■□□□ 1.69
CTSA-201ENST00000191018 EIF3AQ14152 1382 aaKnown RBP25.57■■□□□ 1.68
CTSA-201ENST00000191018 MYO3AQ8NEV4 1616 aa25.56■■□□□ 1.68
CTSA-201ENST00000191018 GTF3C3Q9Y5Q9 886 aa25.55■■□□□ 1.68
CTSA-201ENST00000191018 SPATA31D1Q6ZQQ2 1576 aa25.55■■□□□ 1.68
CTSA-201ENST00000191018 ADGRB1O14514 1584 aa25.54■■□□□ 1.68
CTSA-201ENST00000191018 CCDC184Q52MB2 194 aa25.53■■□□□ 1.68
CTSA-201ENST00000191018 C14orf93Q9H972 538 aaKnown RBP25.53■■□□□ 1.68
CTSA-201ENST00000191018 ZFYVE9O95405 1425 aa25.53■■□□□ 1.68
CTSA-201ENST00000191018 FBXO31Q5XUX0 539 aaPredicted RBP25.52■■□□□ 1.68
CTSA-201ENST00000191018 VGFO15240 615 aaPredicted RBP25.49■■□□□ 1.67
CTSA-201ENST00000191018 KTN1Q86UP2 1357 aaKnown RBP25.49■■□□□ 1.67
CTSA-201ENST00000191018 PER1O15534 1290 aaPredicted RBP25.47■■□□□ 1.67
CTSA-201ENST00000191018 SBNO2Q9Y2G9 1366 aa25.46■■□□□ 1.67
CTSA-201ENST00000191018 MRS2Q9HD23 443 aa25.46■■□□□ 1.67
CTSA-201ENST00000191018 SLC24A1O60721 1099 aa25.45■■□□□ 1.67
CTSA-201ENST00000191018 MLECQ14165 292 aa25.45■■□□□ 1.67
CTSA-201ENST00000191018 CDCA8Q53HL2 280 aa25.45■■□□□ 1.67
CTSA-201ENST00000191018 KDM5AP29375 1690 aaKnown RBP25.45■■□□□ 1.66
CTSA-201ENST00000191018 MYOM1P52179 1685 aa25.44■■□□□ 1.66
CTSA-201ENST00000191018 RALBP1Q15311 655 aa25.41■■□□□ 1.66
CTSA-201ENST00000191018 ZMYM3Q14202 1370 aa25.4■■□□□ 1.66
CTSA-201ENST00000191018 PANK3Q9H999 370 aa25.4■■□□□ 1.66
CTSA-201ENST00000191018 QRICH2Q9H0J4 1663 aa25.39■■□□□ 1.66
CTSA-201ENST00000191018 PARD3Q8TEW0 1356 aa25.39■■□□□ 1.65
CTSA-201ENST00000191018 NUTM2DQ5VT03 806 aaPredicted RBP25.38■■□□□ 1.65
CTSA-201ENST00000191018 ARHGEF28Q8N1W1 1705 aaKnown RBP25.38■■□□□ 1.65
CTSA-201ENST00000191018 A2ML1A8K2U0 1454 aa25.38■■□□□ 1.65
CTSA-201ENST00000191018 CENPJQ9HC77 1338 aaPredicted RBP25.37■■□□□ 1.65
CTSA-201ENST00000191018 ASXL1Q8IXJ9 1541 aa25.36■■□□□ 1.65
CTSA-201ENST00000191018 TMEM132EQ6IEE7 984 aa25.36■■□□□ 1.65
CTSA-201ENST00000191018 MYBBP1AQ9BQG0 1328 aaKnown RBP25.36■■□□□ 1.65
CTSA-201ENST00000191018 CNGB1Q14028 1251 aaPredicted RBP25.35■■□□□ 1.65
CTSA-201ENST00000191018 ESF1Q9H501 851 aaKnown RBP25.34■■□□□ 1.65
CTSA-201ENST00000191018 TRAK1Q9UPV9 953 aa25.34■■□□□ 1.65
CTSA-201ENST00000191018 HNRNPUQ00839 825 aaKnown RBP eCLIP25.33■■□□□ 1.65
CTSA-201ENST00000191018 FAM9BQ8IZU0 186 aa25.32■■□□□ 1.64
CTSA-201ENST00000191018 BRD4O60885 1362 aaPredicted RBP25.32■■□□□ 1.64
CTSA-201ENST00000191018 STAG3Q9UJ98 1225 aa25.3■■□□□ 1.64
CTSA-201ENST00000191018 ALKQ9UM73 1620 aa25.29■■□□□ 1.64
CTSA-201ENST00000191018 TRHP20396 242 aaPredicted RBP25.29■■□□□ 1.64
CTSA-201ENST00000191018 RIMS2Q9UQ26 1411 aa25.26■■□□□ 1.63
CTSA-201ENST00000191018 SETD1AO15047 1707 aaKnown RBP25.26■■□□□ 1.63
CTSA-201ENST00000191018 PNISRQ8TF01 805 aaKnown RBP25.26■■□□□ 1.63
CTSA-201ENST00000191018 NLRP13Q86W25 1043 aa25.25■■□□□ 1.63
CTSA-201ENST00000191018 TMC1Q8TDI8 760 aa25.25■■□□□ 1.63
CTSA-201ENST00000191018 TNRQ92752 1358 aa25.25■■□□□ 1.63
CTSA-201ENST00000191018 NPC1L1Q9UHC9 1359 aa25.23■■□□□ 1.63
CTSA-201ENST00000191018 CC2D1BQ5T0F9 858 aaKnown RBP25.23■■□□□ 1.63
CTSA-201ENST00000191018 AMER1Q5JTC6 1135 aaPredicted RBP25.22■■□□□ 1.63
CTSA-201ENST00000191018 KNSTRNQ9Y448 316 aa25.22■■□□□ 1.63
CTSA-201ENST00000191018 UBR1Q8IWV7 1749 aa25.22■■□□□ 1.63
CTSA-201ENST00000191018 PTPRMP28827 1452 aa25.22■■□□□ 1.63
CTSA-201ENST00000191018 LRPPRCP42704 1394 aaKnown RBP25.22■■□□□ 1.63
CTSA-201ENST00000191018 YTHDC2Q9H6S0 1430 aaKnown RBP25.21■■□□□ 1.63
CTSA-201ENST00000191018 TULP4Q9NRJ4 1543 aa25.21■■□□□ 1.63
CTSA-201ENST00000191018 PUS7Q96PZ0 661 aaKnown RBP25.2■■□□□ 1.62
CTSA-201ENST00000191018 NRXN3Q9Y4C0 1643 aa25.2■■□□□ 1.62
CTSA-201ENST00000191018 ZBED9Q6R2W3 1325 aa25.2■■□□□ 1.62
CTSA-201ENST00000191018 FER1L4A9Z1Z3 1794 aa25.19■■□□□ 1.62
CTSA-201ENST00000191018 C3P01024 1663 aa25.19■■□□□ 1.62
CTSA-201ENST00000191018 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.16■■□□□ 1.62
CTSA-201ENST00000191018 EVC2Q86UK5 1308 aa25.15■■□□□ 1.62
CTSA-201ENST00000191018 NLRP1Q9C000 1473 aa25.15■■□□□ 1.62
CTSA-201ENST00000191018 DLC1Q96QB1 1528 aa25.14■■□□□ 1.62
CTSA-201ENST00000191018 CARD14Q9BXL6 1004 aa25.13■■□□□ 1.61
CTSA-201ENST00000191018 SENP3Q9H4L4 574 aaPredicted RBP25.13■■□□□ 1.61
CTSA-201ENST00000191018 STK26Q9P289 416 aa25.13■■□□□ 1.61
CTSA-201ENST00000191018 DNAJC5Q9H3Z4 198 aa25.12■■□□□ 1.61
CTSA-201ENST00000191018 TMEM2Q9UHN6 1383 aa25.11■■□□□ 1.61
CTSA-201ENST00000191018 USP32Q8NFA0 1604 aa25.09■■□□□ 1.61
CTSA-201ENST00000191018 HDGFP51858 240 aaKnown RBP25.09■■□□□ 1.61
CTSA-201ENST00000191018 PPP2R1AP30153 589 aa25.07■■□□□ 1.6
CTSA-201ENST00000191018 PRAM1Q96QH2 718 aa25.07■■□□□ 1.6
CTSA-201ENST00000191018 INSRP06213 1382 aa25.07■■□□□ 1.6
CTSA-201ENST00000191018 CEBPAP49715 358 aaPredicted RBP25.06■■□□□ 1.6
CTSA-201ENST00000191018 SLC12A5Q9H2X9 1139 aa25.06■■□□□ 1.6
CTSA-201ENST00000191018 ABCC11Q96J66 1382 aa25.06■■□□□ 1.6
CTSA-201ENST00000191018 KNDC1Q76NI1 1749 aa25.06■■□□□ 1.6
CTSA-201ENST00000191018 SAFB2Q14151 953 aaKnown RBP eCLIP25.04■■□□□ 1.6
CTSA-201ENST00000191018 SUPT16HQ9Y5B9 1047 aaKnown RBP25.04■■□□□ 1.6
CTSA-201ENST00000191018 NINLQ9Y2I6 1382 aa25.03■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 146.7 ms