RNA–Protein interactions for RNA: ENST00000075430.11

CTDP1-201, Transcript of CTD phosphatase subunit 1, humanhuman

TSL 1 (best) BASIC

Gene CTDP1, Length 3,538 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1-201ENST00000075430 CCDC141Q6ZP82 1450 aa21.45■■□□□ 1.02
CTDP1-201ENST00000075430 MBD5Q9P267 1494 aa21.44■■□□□ 1.02
CTDP1-201ENST00000075430 RRAGDQ9NQL2 400 aaPredicted RBP21.44■■□□□ 1.02
CTDP1-201ENST00000075430 ERBINQ96RT1 1412 aa21.44■■□□□ 1.02
CTDP1-201ENST00000075430 SAFB2Q14151 953 aaKnown RBP eCLIP21.43■■□□□ 1.02
CTDP1-201ENST00000075430 ITSN2Q9NZM3 1697 aa21.41■■□□□ 1.02
CTDP1-201ENST00000075430 SYCP2Q9BX26 1530 aa21.4■■□□□ 1.02
CTDP1-201ENST00000075430 ADGRL2O95490 1459 aa21.39■■□□□ 1.02
CTDP1-201ENST00000075430 ABCC10Q5T3U5 1492 aa21.39■■□□□ 1.02
CTDP1-201ENST00000075430 NPM1P06748 294 aaKnown RBP eCLIP21.39■■□□□ 1.01
CTDP1-201ENST00000075430 CFAP70Q5T0N1 1121 aa21.39■■□□□ 1.01
CTDP1-201ENST00000075430 PDZRN3Q9UPQ7 1066 aa21.39■■□□□ 1.01
CTDP1-201ENST00000075430 RLBP1P12271 317 aa21.38■■□□□ 1.01
CTDP1-201ENST00000075430 AMER1Q5JTC6 1135 aaPredicted RBP21.38■■□□□ 1.01
CTDP1-201ENST00000075430 PCDHB15Q9Y5E8 787 aa21.38■■□□□ 1.01
CTDP1-201ENST00000075430 FTSJ3Q8IY81 847 aaKnown RBP21.37■■□□□ 1.01
CTDP1-201ENST00000075430 HSP90AA1P07900 732 aaKnown RBP21.36■■□□□ 1.01
CTDP1-201ENST00000075430 TBC1D2Q9BYX2 928 aa21.36■■□□□ 1.01
CTDP1-201ENST00000075430 PRAG1Q86YV5 1406 aa21.36■■□□□ 1.01
CTDP1-201ENST00000075430 E9PSI1 815 aa21.35■■□□□ 1.01
CTDP1-201ENST00000075430 TRAK1Q9UPV9 953 aa21.35■■□□□ 1.01
CTDP1-201ENST00000075430 GOLGA6L3A6NEY3 463 aa21.35■■□□□ 1.01
CTDP1-201ENST00000075430 FAM135AQ9P2D6 1515 aa21.35■■□□□ 1.01
CTDP1-201ENST00000075430 MORC1Q86VD1 984 aa21.34■■□□□ 1.01
CTDP1-201ENST00000075430 UHRF1BP1Q6BDS2 1440 aa21.34■■□□□ 1.01
CTDP1-201ENST00000075430 FAM43AQ8N2R8 423 aa21.33■■□□□ 1.01
CTDP1-201ENST00000075430 USP19O94966 1318 aa21.33■■□□□ 1
CTDP1-201ENST00000075430 U2SURPO15042 1029 aaKnown RBP21.33■■□□□ 1
CTDP1-201ENST00000075430 ARID3AQ99856 593 aa21.33■■□□□ 1
CTDP1-201ENST00000075430 PNNQ9H307 717 aaKnown RBP21.33■■□□□ 1
CTDP1-201ENST00000075430 ZBTB7CA1YPR0 619 aa21.32■■□□□ 1
CTDP1-201ENST00000075430 TSR2Q969E8 191 aaKnown RBP21.32■■□□□ 1
CTDP1-201ENST00000075430 RSPH6AQ9H0K4 717 aa21.32■■□□□ 1
CTDP1-201ENST00000075430 WWC1Q8IX03 1113 aa21.31■■□□□ 1
CTDP1-201ENST00000075430 ABCA8O94911 1581 aa21.3■■□□□ 1
CTDP1-201ENST00000075430 U2AF1L5P0DN76 240 aaPredicted RBP21.3■■□□□ 1
CTDP1-201ENST00000075430 U2AF1Q01081 240 aaKnown RBP eCLIP21.3■■□□□ 1
CTDP1-201ENST00000075430 TCP11L2Q8N4U5 519 aa21.3■■□□□ 1
CTDP1-201ENST00000075430 VSIG10Q8N0Z9 540 aa21.3■■□□□ 1
CTDP1-201ENST00000075430 XRCC6P12956 609 aaKnown RBP eCLIP21.29■■□□□ 1
CTDP1-201ENST00000075430 TMEM132EQ6IEE7 984 aa21.29■■□□□ 1
CTDP1-201ENST00000075430 ITPRIPQ8IWB1 547 aa21.29■■□□□ 1
CTDP1-201ENST00000075430 TRAPPC8Q9Y2L5 1435 aa21.29■■□□□ 1
CTDP1-201ENST00000075430 CGNL1Q0VF96 1302 aa21.29■■□□□ 1
CTDP1-201ENST00000075430 SLC12A5Q9H2X9 1139 aa21.29■■□□□ 1
CTDP1-201ENST00000075430 SCAPERQ9BY12 1400 aa21.29■■□□□ 1
CTDP1-201ENST00000075430 CDCA8Q53HL2 280 aa21.28■■□□□ 1
CTDP1-201ENST00000075430 CDC42BPAQ5VT25 1732 aa21.28■■□□□ 1
CTDP1-201ENST00000075430 UBE2Q2Q8WVN8 375 aa21.28■■□□□ 1
CTDP1-201ENST00000075430 ERCC6L2Q5T890 1561 aa21.27■■□□□ 1
CTDP1-201ENST00000075430 BLMP54132 1417 aaPredicted RBP21.27■■□□□ 1
CTDP1-201ENST00000075430 L1TD1Q5T7N2 865 aaKnown RBP21.27■■□□□ 1
CTDP1-201ENST00000075430 STK26Q9P289 416 aa21.27■■□□□ 1
CTDP1-201ENST00000075430 KANK1Q14678 1352 aa21.26■□□□□ 0.99
CTDP1-201ENST00000075430 MAGI2Q86UL8 1455 aa21.26■□□□□ 0.99
CTDP1-201ENST00000075430 ADGBQ8N7X0 1667 aa21.26■□□□□ 0.99
CTDP1-201ENST00000075430 MAPK8IP3Q9UPT6 1336 aa21.25■□□□□ 0.99
CTDP1-201ENST00000075430 A2MP01023 1474 aa21.25■□□□□ 0.99
CTDP1-201ENST00000075430 TPRNQ4KMQ1 711 aa21.25■□□□□ 0.99
CTDP1-201ENST00000075430 CARD14Q9BXL6 1004 aa21.25■□□□□ 0.99
CTDP1-201ENST00000075430 POLR1AO95602 1720 aaPredicted RBP21.24■□□□□ 0.99
CTDP1-201ENST00000075430 TRAK2O60296 914 aa21.24■□□□□ 0.99
CTDP1-201ENST00000075430 SMC4Q9NTJ3 1288 aa21.24■□□□□ 0.99
CTDP1-201ENST00000075430 NCLP19338 710 aaKnown RBP21.23■□□□□ 0.99
CTDP1-201ENST00000075430 C22orf23Q9BZE7 217 aa21.23■□□□□ 0.99
CTDP1-201ENST00000075430 SAMD9LQ8IVG5 1584 aa21.23■□□□□ 0.99
CTDP1-201ENST00000075430 SHANK2Q9UPX8 1470 aa21.23■□□□□ 0.99
CTDP1-201ENST00000075430 ZMYM4Q5VZL5 1548 aa21.23■□□□□ 0.99
CTDP1-201ENST00000075430 RWDD1Q9H446 243 aaPredicted RBP21.22■□□□□ 0.99
CTDP1-201ENST00000075430 PLA2R1Q13018 1463 aa21.22■□□□□ 0.99
CTDP1-201ENST00000075430 MCM4P33991 863 aa21.22■□□□□ 0.99
CTDP1-201ENST00000075430 MTHFSP49914 203 aa21.22■□□□□ 0.99
CTDP1-201ENST00000075430 RARSP54136 660 aaKnown RBP21.22■□□□□ 0.99
CTDP1-201ENST00000075430 LNPKQ9C0E8 428 aa21.22■□□□□ 0.99
CTDP1-201ENST00000075430 ZNF521Q96K83 1311 aa21.22■□□□□ 0.99
CTDP1-201ENST00000075430 ELL2O00472 640 aaPredicted RBP21.22■□□□□ 0.99
CTDP1-201ENST00000075430 COL17A1Q9UMD9 1497 aaPredicted RBP21.22■□□□□ 0.99
CTDP1-201ENST00000075430 PMFBP1Q8TBY8 1022 aa21.21■□□□□ 0.99
CTDP1-201ENST00000075430 TRIM44Q96DX7 344 aaPredicted RBP21.21■□□□□ 0.99
CTDP1-201ENST00000075430 ADGRF5Q8IZF2 1346 aa21.21■□□□□ 0.99
CTDP1-201ENST00000075430 NKTRP30414 1462 aaKnown RBP21.2■□□□□ 0.99
CTDP1-201ENST00000075430 HSCBQ8IWL3 235 aa21.2■□□□□ 0.98
CTDP1-201ENST00000075430 HSP90AB1P08238 724 aaKnown RBP21.19■□□□□ 0.98
CTDP1-201ENST00000075430 PDE3AQ14432 1141 aa21.18■□□□□ 0.98
CTDP1-201ENST00000075430 MYH16Q9H6N6 1097 aa21.18■□□□□ 0.98
CTDP1-201ENST00000075430 TTC37Q6PGP7 1564 aa21.17■□□□□ 0.98
CTDP1-201ENST00000075430 APBB1O00213 710 aa21.17■□□□□ 0.98
CTDP1-201ENST00000075430 TBC1D32Q96NH3 1257 aa21.17■□□□□ 0.98
CTDP1-201ENST00000075430 C1orf115Q9H7X2 142 aa21.17■□□□□ 0.98
CTDP1-201ENST00000075430 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.16■□□□□ 0.98
CTDP1-201ENST00000075430 ARHGEF12Q9NZN5 1544 aa21.16■□□□□ 0.98
CTDP1-201ENST00000075430 HSP90AA2PQ14568 343 aaPredicted RBP21.15■□□□□ 0.98
CTDP1-201ENST00000075430 EXOSC9Q06265 439 aaKnown RBP21.14■□□□□ 0.97
CTDP1-201ENST00000075430 STAG3Q9UJ98 1225 aa21.14■□□□□ 0.97
CTDP1-201ENST00000075430 PLCH2O75038 1416 aa21.13■□□□□ 0.97
CTDP1-201ENST00000075430 DZIP1LQ8IYY4 767 aaKnown RBP21.13■□□□□ 0.97
CTDP1-201ENST00000075430 FOXD4L5Q5VV16 416 aaPredicted RBP21.12■□□□□ 0.97
CTDP1-201ENST00000075430 FOXD4L4Q8WXT5 416 aaPredicted RBP21.12■□□□□ 0.97
CTDP1-201ENST00000075430 EIF3AQ14152 1382 aaKnown RBP21.12■□□□□ 0.97
CTDP1-201ENST00000075430 RAPGEF3O95398 923 aa21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms