RNA–Protein interactions for RNA: ENSMUST00000042717.12

Trim39-201, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim39, Length 3,085 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-201ENSMUST00000042717 Hfm1D3Z4R1 1434 aa12.08□□□□□ -0.48
Trim39-201ENSMUST00000042717 CltcQ68FD5 1675 aaKnown RBP12.07□□□□□ -0.48
Trim39-201ENSMUST00000042717 Rsph4aQ8BYM7 716 aa12.07□□□□□ -0.48
Trim39-201ENSMUST00000042717 Knl1Q66JQ7 1612 aa12.07□□□□□ -0.48
Trim39-201ENSMUST00000042717 RalgapbQ8BQZ4 1484 aa12.07□□□□□ -0.48
Trim39-201ENSMUST00000042717 Nop58Q6DFW4 536 aaKnown RBP12.07□□□□□ -0.48
Trim39-201ENSMUST00000042717 Rock2P70336 1388 aa12.06□□□□□ -0.48
Trim39-201ENSMUST00000042717 Skint5A7XUY5 1461 aa12.05□□□□□ -0.48
Trim39-201ENSMUST00000042717 Ncoa1P70365 1447 aa12.05□□□□□ -0.48
Trim39-201ENSMUST00000042717 Akap12Q9WTQ5 1684 aa12.05□□□□□ -0.48
Trim39-201ENSMUST00000042717 Zmym4A2A791 1549 aaKnown RBP12.05□□□□□ -0.48
Trim39-201ENSMUST00000042717 Srcin1Q9QWI6 1250 aa12.05□□□□□ -0.48
Trim39-201ENSMUST00000042717 Gm13695A2AK44 830 aa12.04□□□□□ -0.48
Trim39-201ENSMUST00000042717 Stk26Q99JT2 416 aa12.04□□□□□ -0.48
Trim39-201ENSMUST00000042717 AU022751B1B0V2 589 aa12.04□□□□□ -0.48
Trim39-201ENSMUST00000042717 Usp40Q8BWR4 1235 aa12.04□□□□□ -0.48
Trim39-201ENSMUST00000042717 Adgrb3Q80ZF8 1522 aa12.04□□□□□ -0.48
Trim39-201ENSMUST00000042717 Puf60Q3UEB3 564 aaKnown RBP12.03□□□□□ -0.48
Trim39-201ENSMUST00000042717 Abca8aQ8K442 1620 aa12.03□□□□□ -0.48
Trim39-201ENSMUST00000042717 Shq1Q7TMX5 569 aa12.02□□□□□ -0.48
Trim39-201ENSMUST00000042717 Efcab6Q6P1E8 1516 aa12.02□□□□□ -0.48
Trim39-201ENSMUST00000042717 Txndc2Q6P902 515 aa12.02□□□□□ -0.49
Trim39-201ENSMUST00000042717 Gtf2e1Q9D0D5 440 aa12.02□□□□□ -0.49
Trim39-201ENSMUST00000042717 Myom2Q14BI5 1463 aa12.01□□□□□ -0.49
Trim39-201ENSMUST00000042717 Prrc2bQ7TPM1 1486 aaKnown RBP12.01□□□□□ -0.49
Trim39-201ENSMUST00000042717 Ino80Q6ZPV2 1559 aa12.01□□□□□ -0.49
Trim39-201ENSMUST00000042717 Myo3aQ8K3H5 1613 aa12□□□□□ -0.49
Trim39-201ENSMUST00000042717 Stag3O70576 1240 aa12□□□□□ -0.49
Trim39-201ENSMUST00000042717 Q9D9H8 365 aa12□□□□□ -0.49
Trim39-201ENSMUST00000042717 Adamts7Q68SA9 1657 aa12□□□□□ -0.49
Trim39-201ENSMUST00000042717 Ehbp1l1Q99MS7 1716 aa12□□□□□ -0.49
Trim39-201ENSMUST00000042717 Prdm10Q3UTQ7 1184 aa12□□□□□ -0.49
Trim39-201ENSMUST00000042717 Ercc6l2Q9JIM3 1537 aa12□□□□□ -0.49
Trim39-201ENSMUST00000042717 Ahdc1Q6PAL7 1594 aaKnown RBP12□□□□□ -0.49
Trim39-201ENSMUST00000042717 Tecpr2Q3UH45 1423 aa11.99□□□□□ -0.49
Trim39-201ENSMUST00000042717 Psme1P97371 249 aa11.98□□□□□ -0.49
Trim39-201ENSMUST00000042717 Prdm2A2A7B5 1709 aaKnown RBP11.97□□□□□ -0.49
Trim39-201ENSMUST00000042717 Cnga1P29974 684 aa11.97□□□□□ -0.49
Trim39-201ENSMUST00000042717 Asxl2Q8BZ32 1370 aa11.97□□□□□ -0.49
Trim39-201ENSMUST00000042717 Rims1Q99NE5 1463 aa11.96□□□□□ -0.49
Trim39-201ENSMUST00000042717 IqubQ8CDK3 788 aa11.96□□□□□ -0.49
Trim39-201ENSMUST00000042717 Adamtsl3G3UXC7 1706 aa11.96□□□□□ -0.49
Trim39-201ENSMUST00000042717 Arid4bA2CG63 1314 aaKnown RBP11.96□□□□□ -0.5
Trim39-201ENSMUST00000042717 Mroh1E0CZ22 1640 aa11.96□□□□□ -0.5
Trim39-201ENSMUST00000042717 Wwc2Q6NXJ0 1187 aa11.95□□□□□ -0.5
Trim39-201ENSMUST00000042717 Arhgap23Q69ZH9 1483 aa11.95□□□□□ -0.5
Trim39-201ENSMUST00000042717 Naip7Q9JIB3 1402 aa11.94□□□□□ -0.5
Trim39-201ENSMUST00000042717 Slc4a1apE9PX68 744 aa11.94□□□□□ -0.5
Trim39-201ENSMUST00000042717 Plekhg5Q66T02 1073 aa11.94□□□□□ -0.5
Trim39-201ENSMUST00000042717 RictorQ6QI06 1708 aa11.94□□□□□ -0.5
Trim39-201ENSMUST00000042717 PtprmP28828 1452 aa11.94□□□□□ -0.5
Trim39-201ENSMUST00000042717 Smg6P61406 1418 aaKnown RBP11.94□□□□□ -0.5
Trim39-201ENSMUST00000042717 Utp14aQ640M1 767 aaKnown RBP11.93□□□□□ -0.5
Trim39-201ENSMUST00000042717 Pank3Q8R2W9 370 aa11.93□□□□□ -0.5
Trim39-201ENSMUST00000042717 Cep152A2AUM9 1736 aaKnown RBP11.93□□□□□ -0.5
Trim39-201ENSMUST00000042717 Kif13aQ9EQW7 1749 aa11.92□□□□□ -0.5
Trim39-201ENSMUST00000042717 Inpp5dQ9ES52 1191 aa11.92□□□□□ -0.5
Trim39-201ENSMUST00000042717 Slc52a2Q9D8F3 450 aa11.92□□□□□ -0.5
Trim39-201ENSMUST00000042717 Mrs2Q5NCE8 434 aa11.91□□□□□ -0.5
Trim39-201ENSMUST00000042717 Lrrc7Q80TE7 1490 aa11.91□□□□□ -0.5
Trim39-201ENSMUST00000042717 Exoc6Q8R313 802 aa11.91□□□□□ -0.5
Trim39-201ENSMUST00000042717 Mink1Q9JM52 1308 aa11.91□□□□□ -0.5
Trim39-201ENSMUST00000042717 Uggt1Q6P5E4 1551 aa11.91□□□□□ -0.5
Trim39-201ENSMUST00000042717 Stard8Q8K031 1019 aa11.9□□□□□ -0.51
Trim39-201ENSMUST00000042717 Cdk5rap2Q8K389 1822 aa11.89□□□□□ -0.51
Trim39-201ENSMUST00000042717 PrxO55103 1391 aa11.89□□□□□ -0.51
Trim39-201ENSMUST00000042717 Plxnc1Q9QZC2 1574 aa11.88□□□□□ -0.51
Trim39-201ENSMUST00000042717 Nphp4P59240 1425 aa11.88□□□□□ -0.51
Trim39-201ENSMUST00000042717 Itsn1Q9Z0R4 1714 aa11.88□□□□□ -0.51
Trim39-201ENSMUST00000042717 Tmf1B9EKI3 1091 aa11.88□□□□□ -0.51
Trim39-201ENSMUST00000042717 Zranb1Q7M760 708 aa11.88□□□□□ -0.51
Trim39-201ENSMUST00000042717 Med14A2ABV5 1459 aaKnown RBP11.87□□□□□ -0.51
Trim39-201ENSMUST00000042717 PalldQ9ET54 1408 aa11.86□□□□□ -0.51
Trim39-201ENSMUST00000042717 Exosc9Q9JHI7 438 aaKnown RBP11.86□□□□□ -0.51
Trim39-201ENSMUST00000042717 4930407I10RikD3Z5T8 1512 aa11.86□□□□□ -0.51
Trim39-201ENSMUST00000042717 IghaA0A0A6YXW6 389 aa11.85□□□□□ -0.51
Trim39-201ENSMUST00000042717 Fam184bQ0KK56 942 aa11.85□□□□□ -0.51
Trim39-201ENSMUST00000042717 NrdcQ8BHG1 1161 aa11.85□□□□□ -0.51
Trim39-201ENSMUST00000042717 Myom1Q62234 1667 aaKnown RBP11.85□□□□□ -0.51
Trim39-201ENSMUST00000042717 Atp2b2Q9R0K7 1198 aa11.85□□□□□ -0.51
Trim39-201ENSMUST00000042717 CenpjQ569L8 1344 aa11.85□□□□□ -0.51
Trim39-201ENSMUST00000042717 Zscan10Q3URR7 782 aa11.84□□□□□ -0.51
Trim39-201ENSMUST00000042717 Znf316Q6PGE4 1016 aa11.83□□□□□ -0.52
Trim39-201ENSMUST00000042717 Setd1aE9PYH6 1716 aa11.83□□□□□ -0.52
Trim39-201ENSMUST00000042717 HnrnpmQ9D0E1 729 aaKnown RBP11.83□□□□□ -0.52
Trim39-201ENSMUST00000042717 Cep170bQ80U49 1574 aa11.83□□□□□ -0.52
Trim39-201ENSMUST00000042717 GphnQ8BUV3 769 aaKnown RBP11.82□□□□□ -0.52
Trim39-201ENSMUST00000042717 Dcaf11Q91VU6 549 aa11.82□□□□□ -0.52
Trim39-201ENSMUST00000042717 Anp32bQ9EST5 272 aaKnown RBP11.82□□□□□ -0.52
Trim39-201ENSMUST00000042717 Pola1P33609 1465 aa11.82□□□□□ -0.52
Trim39-201ENSMUST00000042717 Arhgef28P97433 1693 aa11.81□□□□□ -0.52
Trim39-201ENSMUST00000042717 Myt1Q8CFC2 1127 aa11.8□□□□□ -0.52
Trim39-201ENSMUST00000042717 Cdk19Q8BWD8 501 aa11.79□□□□□ -0.52
Trim39-201ENSMUST00000042717 Dip2bQ3UH60 1574 aa11.79□□□□□ -0.52
Trim39-201ENSMUST00000042717 Itsn2Q9Z0R6 1659 aa11.79□□□□□ -0.52
Trim39-201ENSMUST00000042717 Alpk3Q924C5 1678 aa11.79□□□□□ -0.52
Trim39-201ENSMUST00000042717 Slc4a2P13808 1237 aaKnown RBP11.78□□□□□ -0.52
Trim39-201ENSMUST00000042717 DnmbpQ6TXD4 1580 aa11.78□□□□□ -0.52
Trim39-201ENSMUST00000042717 Stra8P70278 393 aa11.78□□□□□ -0.52
Trim39-201ENSMUST00000042717 Sipa1l1Q8C0T5 1782 aa11.78□□□□□ -0.52
Retrieved 100 of 22,080 RNA–protein pairs in 27.2 ms