RNA–Protein interactions for RNA: YKR036C

CAF4, Transcript of WD40 repeat-containing protein associated with the CCR4-NOT complex, yeastyeast

Gene CAF4, Length 1,932 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF4YKR036C YEL057CP39983 233 aa4.31□□□□□ -1.72
CAF4YKR036C AIR1P40507 360 aaKnown RBP4.31□□□□□ -1.72
CAF4YKR036C GPI14P47088 403 aaKnown RBP4.31□□□□□ -1.72
CAF4YKR036C MTO1P53070 669 aa4.31□□□□□ -1.72
CAF4YKR036C THG1P53215 237 aaKnown RBP4.31□□□□□ -1.72
CAF4YKR036C DIA1P54005 336 aa4.31□□□□□ -1.72
CAF4YKR036C MTQ2Q03920 221 aaPredicted RBP4.31□□□□□ -1.72
CAF4YKR036C LEU9Q12166 604 aaKnown RBP4.31□□□□□ -1.72
CAF4YKR036C YPR011CQ12251 326 aa4.31□□□□□ -1.72
CAF4YKR036C HXT4P32467 576 aa4.31□□□□□ -1.72
CAF4YKR036C PRP18P33411 251 aaPredicted RBP4.31□□□□□ -1.72
CAF4YKR036C CBP4P37267 147 aa4.31□□□□□ -1.72
CAF4YKR036C ELO1P39540 310 aa4.31□□□□□ -1.72
CAF4YKR036C NAS2P40555 220 aa4.31□□□□□ -1.72
CAF4YKR036C LOC1P43586 204 aaPredicted RBP4.31□□□□□ -1.72
CAF4YKR036C CIS3P47001 227 aa4.31□□□□□ -1.72
CAF4YKR036C RIB4P50861 169 aaPredicted RBP4.31□□□□□ -1.72
CAF4YKR036C HST3P53687 447 aa4.31□□□□□ -1.72
CAF4YKR036C YPL080CQ02826 108 aa4.31□□□□□ -1.72
CAF4YKR036C RCE1Q03530 315 aa4.31□□□□□ -1.72
CAF4YKR036C HRD1Q08109 551 aa4.31□□□□□ -1.72
CAF4YKR036C YDL157CQ12082 118 aa4.31□□□□□ -1.72
CAF4YKR036C YDL177CQ12257 170 aa4.31□□□□□ -1.72
CAF4YKR036C TPT1Q12272 230 aaKnown RBP4.31□□□□□ -1.72
CAF4YKR036C FRE7Q12333 620 aa4.31□□□□□ -1.72
CAF4YKR036C SLO1Q3E784 85 aa4.31□□□□□ -1.72
CAF4YKR036C INH1P01097 85 aa4.3□□□□□ -1.72
CAF4YKR036C YFL068WP0CX99 160 aa4.3□□□□□ -1.72
CAF4YKR036C YLL066W-AP0CY00 160 aa4.3□□□□□ -1.72
CAF4YKR036C YLL067W-AP0CY01 160 aa4.3□□□□□ -1.72
CAF4YKR036C YKL187CP34231 750 aa4.3□□□□□ -1.72
CAF4YKR036C RPL14AP36105 138 aaKnown RBP4.3□□□□□ -1.72
CAF4YKR036C FIG1P38224 298 aa4.3□□□□□ -1.72
CAF4YKR036C RPL14BP38754 138 aaKnown RBP4.3□□□□□ -1.72
CAF4YKR036C MNL1P38888 796 aa4.3□□□□□ -1.72
CAF4YKR036C PAC2P39937 518 aa4.3□□□□□ -1.72
CAF4YKR036C YDR248CQ03786 193 aa4.3□□□□□ -1.72
CAF4YKR036C TAZ1Q06510 381 aa4.3□□□□□ -1.72
CAF4YKR036C VTS1Q08831 523 aaKnown RBP RIP-Chip data4.3□□□□□ -1.72not detected
CAF4YKR036C ERV2Q12284 196 aa4.3□□□□□ -1.72
CAF4YKR036C YIL046W-AQ3E7Z4 54 aa4.3□□□□□ -1.72
CAF4YKR036C NUP1P20676 1076 aa4.29□□□□□ -1.72
CAF4YKR036C MTR2P34232 184 aaKnown RBP4.29□□□□□ -1.72
CAF4YKR036C QDR3P38227 689 aa4.29□□□□□ -1.72
CAF4YKR036C UMP1P38293 148 aa4.29□□□□□ -1.72
CAF4YKR036C YHR097CP38809 366 aaKnown RBP4.29□□□□□ -1.72
CAF4YKR036C HSP10P38910 106 aa4.29□□□□□ -1.72
CAF4YKR036C YGR126WP53274 230 aa4.29□□□□□ -1.72
CAF4YKR036C ALG9P53868 555 aaKnown RBP4.29□□□□□ -1.72
CAF4YKR036C RNH201P53942 307 aa4.29□□□□□ -1.72
CAF4YKR036C TGL2P54857 326 aa4.29□□□□□ -1.72
CAF4YKR036C HRI1Q05905 244 aaKnown RBP4.29□□□□□ -1.72
CAF4YKR036C PRR2Q12310 699 aa4.29□□□□□ -1.72
CAF4YKR036C IRA1P18963 3092 aa4.29□□□□□ -1.72
CAF4YKR036C BRR2P32639 2163 aaKnown RBP4.29□□□□□ -1.72
CAF4YKR036C POR1P04840 283 aaKnown RBP4.29□□□□□ -1.72
CAF4YKR036C RPB5P20434 215 aa4.29□□□□□ -1.72
CAF4YKR036C RPI1P23250 407 aaKnown RBP4.29□□□□□ -1.72
CAF4YKR036C MRS4P23500 304 aa4.29□□□□□ -1.72
CAF4YKR036C CWP1P28319 239 aa4.29□□□□□ -1.72
CAF4YKR036C ERG3P32353 365 aa4.29□□□□□ -1.72
CAF4YKR036C YJL068CP40363 299 aa4.29□□□□□ -1.72
CAF4YKR036C INP1Q03694 420 aa4.29□□□□□ -1.72
CAF4YKR036C FSH2Q05015 223 aa4.29□□□□□ -1.72
CAF4YKR036C STP4Q07351 490 aa4.29□□□□□ -1.72
CAF4YKR036C HSP33Q08914 237 aaKnown RBP4.29□□□□□ -1.72
CAF4YKR036C FSF1Q12029 327 aaKnown RBP4.29□□□□□ -1.72
CAF4YKR036C YCT1Q12235 531 aa4.29□□□□□ -1.72
CAF4YKR036C HUT1Q12520 339 aa4.29□□□□□ -1.72
CAF4YKR036C RPL13AQ12690 199 aaPredicted RBP4.29□□□□□ -1.72
CAF4YKR036C RNQ1P25367 405 aa4.28□□□□□ -1.72
CAF4YKR036C ECM15P35195 104 aa4.28□□□□□ -1.72
CAF4YKR036C PAU16P35994 123 aa4.28□□□□□ -1.72
CAF4YKR036C YBR292CP38357 123 aa4.28□□□□□ -1.72
CAF4YKR036C DOG1P38774 246 aa4.28□□□□□ -1.72
CAF4YKR036C POP2P39008 433 aa4.28□□□□□ -1.72
CAF4YKR036C SMD3P43321 101 aaKnown RBP4.28□□□□□ -1.72
CAF4YKR036C YJL028WP47062 111 aa4.28□□□□□ -1.72
CAF4YKR036C TOS2P50078 622 aa4.28□□□□□ -1.72
CAF4YKR036C MIC26P50087 233 aa4.28□□□□□ -1.72
CAF4YKR036C CTF19Q02732 369 aa4.28□□□□□ -1.72
CAF4YKR036C ADH6Q04894 360 aaKnown RBP4.28□□□□□ -1.72
CAF4YKR036C YOR378WQ08902 515 aa4.28□□□□□ -1.72
CAF4YKR036C FRE8Q12209 686 aa4.28□□□□□ -1.72
CAF4YKR036C ORT1Q12375 292 aa4.28□□□□□ -1.72
CAF4YKR036C DAL82P21705 255 aa4.27□□□□□ -1.73
CAF4YKR036C SCO1P23833 295 aa4.27□□□□□ -1.73
CAF4YKR036C YCR007CP25354 239 aa4.27□□□□□ -1.73
CAF4YKR036C MDH3P32419 343 aaKnown RBP RIP-Chip data4.27□□□□□ -1.73not detected
CAF4YKR036C MTC7P32633 139 aa4.27□□□□□ -1.73
CAF4YKR036C SLC1P33333 303 aa4.27□□□□□ -1.73
CAF4YKR036C MIX23P38162 196 aa4.27□□□□□ -1.73
CAF4YKR036C ARC40P38328 384 aaKnown RBP4.27□□□□□ -1.73
CAF4YKR036C GIP2P40036 548 aa4.27□□□□□ -1.73
CAF4YKR036C YNL195CP40168 261 aa4.27□□□□□ -1.73
CAF4YKR036C RPL13BP40212 199 aaKnown RBP4.27□□□□□ -1.73
CAF4YKR036C HSV2P50079 448 aaPredicted RBP4.27□□□□□ -1.73
CAF4YKR036C HHT1P61830 136 aa4.27□□□□□ -1.73
CAF4YKR036C YDR391CQ04170 232 aa4.27□□□□□ -1.73
CAF4YKR036C DFG5Q05031 458 aa4.27□□□□□ -1.73
Retrieved 100 of 5,963 RNA–protein pairs in 26.6 ms