RNA–Protein interactions for RNA: YDL126C

CDC48, Transcript of AAA ATPase, yeast

Gene CDC48, Length 2,508 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC48	YDL126C	NRK1	P53915	240 aa		4	□□□□□ -1.77
CDC48	YDL126C	GIP3	Q03016	1276 aa		4	□□□□□ -1.77
CDC48	YDL126C	YMR099C	Q03161	297 aa	Known RBP	4	□□□□□ -1.77
CDC48	YDL126C	YML018C	Q03730	393 aa		4	□□□□□ -1.77
CDC48	YDL126C	MRPL51	Q06090	140 aa	Predicted RBP	4	□□□□□ -1.77
CDC48	YDL126C	DAP1	Q12091	152 aa		4	□□□□□ -1.77
CDC48	YDL126C	PST2	Q12335	198 aa	Known RBP	4	□□□□□ -1.77
CDC48	YDL126C	DDI2	P0CH63	225 aa		3.99	□□□□□ -1.77
CDC48	YDL126C	DDI3	P0CH64	225 aa		3.99	□□□□□ -1.77
CDC48	YDL126C	YMR31	P19955	123 aa		3.99	□□□□□ -1.77
CDC48	YDL126C	YCR007C	P25354	239 aa		3.99	□□□□□ -1.77
CDC48	YDL126C	LSB5	P25369	354 aa		3.99	□□□□□ -1.77
CDC48	YDL126C	CLB6	P32943	380 aa		3.99	□□□□□ -1.77
CDC48	YDL126C	YHR127W	P38833	243 aa	Known RBP	3.99	□□□□□ -1.77
CDC48	YDL126C	JAC1	P53193	184 aa		3.99	□□□□□ -1.77
CDC48	YDL126C	MET31	Q03081	177 aa		3.99	□□□□□ -1.77
CDC48	YDL126C	CGI121	Q03705	181 aa	Known RBP	3.99	□□□□□ -1.77
CDC48	YDL126C	TEN1	Q07921	160 aa		3.99	□□□□□ -1.77
CDC48	YDL126C	YPR011C	Q12251	326 aa		3.99	□□□□□ -1.77
CDC48	YDL126C	YLR126C	Q12288	251 aa		3.99	□□□□□ -1.77
CDC48	YDL126C	RRI1	Q12468	440 aa		3.99	□□□□□ -1.77
CDC48	YDL126C	MHT1	Q12525	324 aa		3.99	□□□□□ -1.77
CDC48	YDL126C	YLR361C-A	Q3E795	98 aa		3.99	□□□□□ -1.77
CDC48	YDL126C	YSR3	P23501	404 aa		3.99	□□□□□ -1.77
CDC48	YDL126C	ARO2	P28777	376 aa	Known RBP	3.99	□□□□□ -1.77
CDC48	YDL126C	ZRT3	P34240	503 aa		3.99	□□□□□ -1.77
CDC48	YDL126C	MRPL24	P36525	258 aa	Predicted RBP	3.99	□□□□□ -1.77
CDC48	YDL126C	YBR013C	P38215	129 aa		3.99	□□□□□ -1.77
CDC48	YDL126C	YMR166C	Q03829	368 aa		3.99	□□□□□ -1.77
CDC48	YDL126C	VBA1	Q04301	562 aa		3.99	□□□□□ -1.77
CDC48	YDL126C	ERP1	Q05359	219 aa	Known RBP	3.99	□□□□□ -1.77
CDC48	YDL126C	ATG39	Q06159	398 aa		3.99	□□□□□ -1.77
CDC48	YDL126C	YLR118C	Q12354	227 aa		3.99	□□□□□ -1.77
CDC48	YDL126C	RPL7A	P05737	244 aa	Known RBP	3.98	□□□□□ -1.77
CDC48	YDL126C	YKR104W	P0CE69	306 aa		3.98	□□□□□ -1.77
CDC48	YDL126C	YCR102C	P25608	368 aa		3.98	□□□□□ -1.77
CDC48	YDL126C	SEC17	P32602	292 aa		3.98	□□□□□ -1.77
CDC48	YDL126C	YBR096W	P38256	230 aa		3.98	□□□□□ -1.77
CDC48	YDL126C	DER1	P38307	211 aa		3.98	□□□□□ -1.77
CDC48	YDL126C	INM1	P38710	295 aa		3.98	□□□□□ -1.77
CDC48	YDL126C	YEL073C	P39974	107 aa		3.98	□□□□□ -1.77
CDC48	YDL126C	MCM22	P47167	239 aa		3.98	□□□□□ -1.77
CDC48	YDL126C	TRM9	P49957	279 aa		3.98	□□□□□ -1.77
CDC48	YDL126C	YPR174C	Q06616	221 aa	Predicted RBP	3.98	□□□□□ -1.77
CDC48	YDL126C	GPI11	Q06636	219 aa		3.98	□□□□□ -1.77
CDC48	YDL126C	ATG10	Q07879	167 aa		3.98	□□□□□ -1.77
CDC48	YDL126C	PAU23	Q07987	124 aa		3.98	□□□□□ -1.77
CDC48	YDL126C	COQ10	Q08058	207 aa		3.98	□□□□□ -1.77
CDC48	YDL126C	RPL7B	Q12213	244 aa	Known RBP	3.98	□□□□□ -1.77
CDC48	YDL126C	PAU17	Q12370	124 aa		3.98	□□□□□ -1.77
CDC48	YDL126C	PRM4	Q12498	284 aa		3.98	□□□□□ -1.77
CDC48	YDL126C	RPS14A	P06367	137 aa	Known RBP	3.98	□□□□□ -1.77
CDC48	YDL126C	RPS28B	P0C0X0	67 aa	Known RBP	3.98	□□□□□ -1.77
CDC48	YDL126C	MAG1	P22134	296 aa	Known RBP	3.98	□□□□□ -1.77
CDC48	YDL126C	TAH1	P25638	111 aa	Predicted RBP	3.98	□□□□□ -1.77
CDC48	YDL126C	MRPS5	P33759	307 aa		3.98	□□□□□ -1.77
CDC48	YDL126C	YNK1	P36010	153 aa	Known RBP	3.98	□□□□□ -1.77
CDC48	YDL126C	YKR041W	P36134	250 aa		3.98	□□□□□ -1.77
CDC48	YDL126C	YHR035W	P38769	630 aa		3.98	□□□□□ -1.77
CDC48	YDL126C	SRP14	P38985	146 aa		3.98	□□□□□ -1.77
CDC48	YDL126C	RPS14B	P39516	138 aa	Known RBP	3.98	□□□□□ -1.77
CDC48	YDL126C	SMB1	P40018	196 aa	Known RBP	3.98	□□□□□ -1.77
CDC48	YDL126C	BMT5	P40493	336 aa		3.98	□□□□□ -1.77
CDC48	YDL126C	TIR3	P40552	269 aa		3.98	□□□□□ -1.77
CDC48	YDL126C	GPI14	P47088	403 aa	Known RBP	3.98	□□□□□ -1.77
CDC48	YDL126C	MGA1	P53050	456 aa		3.98	□□□□□ -1.77
CDC48	YDL126C	BOR1	P53838	576 aa		3.98	□□□□□ -1.77
CDC48	YDL126C	ACT1	P60010	375 aa	Known RBP	3.98	□□□□□ -1.77
CDC48	YDL126C	MSS11	Q03825	758 aa		3.98	□□□□□ -1.77
CDC48	YDL126C	COQ11	Q05892	277 aa		3.98	□□□□□ -1.77
CDC48	YDL126C	CNL1	Q06333	122 aa		3.98	□□□□□ -1.77
CDC48	YDL126C	SCP1	Q08873	200 aa		3.98	□□□□□ -1.77
CDC48	YDL126C	YPL264C	Q08980	353 aa		3.98	□□□□□ -1.77
CDC48	YDL126C	YRA1	Q12159	226 aa	Known RBP	3.98	□□□□□ -1.77
CDC48	YDL126C	RPS28A	Q3E7X9	67 aa	Predicted RBP	3.98	□□□□□ -1.77
CDC48	YDL126C	YPL229W	Q99395	206 aa		3.98	□□□□□ -1.77
CDC48	YDL126C	YER145C-A	A0A023PYF4	145 aa		3.97	□□□□□ -1.77
CDC48	YDL126C	RAD52	P06778	471 aa	Known RBP	3.97	□□□□□ -1.77
CDC48	YDL126C	BGL2	P15703	313 aa	Known RBP	3.97	□□□□□ -1.77
CDC48	YDL126C	ERD2	P18414	219 aa		3.97	□□□□□ -1.77
CDC48	YDL126C	STE18	P18852	110 aa		3.97	□□□□□ -1.77
CDC48	YDL126C	ACB1	P31787	87 aa		3.97	□□□□□ -1.77
CDC48	YDL126C	UPS2	P35200	230 aa		3.97	□□□□□ -1.77
CDC48	YDL126C	YHL044W	P38727	235 aa		3.97	□□□□□ -1.77
CDC48	YDL126C	RPF1	P38805	295 aa	Known RBP	3.97	□□□□□ -1.77
CDC48	YDL126C	YPT35	P38815	214 aa	Known RBP	3.97	□□□□□ -1.77
CDC48	YDL126C	ANS1	P38832	159 aa		3.97	□□□□□ -1.77
CDC48	YDL126C	TIF34	P40217	347 aa	Known RBP	3.97	□□□□□ -1.77
CDC48	YDL126C	ERV29	P53337	310 aa		3.97	□□□□□ -1.77
CDC48	YDL126C	NUP49	Q02199	472 aa		3.97	□□□□□ -1.77
CDC48	YDL126C	DYN2	Q02647	92 aa		3.97	□□□□□ -1.77
CDC48	YDL126C	YMR310C	Q04867	317 aa	Predicted RBP	3.97	□□□□□ -1.77
CDC48	YDL126C	LOA1	Q06508	300 aa		3.97	□□□□□ -1.77
CDC48	YDL126C	MRX9	Q07349	420 aa	Known RBP	3.97	□□□□□ -1.77
CDC48	YDL126C	VPS68	Q12016	184 aa		3.97	□□□□□ -1.77
CDC48	YDL126C	TFC7	Q12415	435 aa		3.97	□□□□□ -1.77
CDC48	YDL126C	RPL13A	Q12690	199 aa	Predicted RBP	3.97	□□□□□ -1.77
CDC48	YDL126C	FSH3	Q99369	266 aa		3.97	□□□□□ -1.77
CDC48	YDL126C	ADH3	P07246	375 aa	Known RBP	3.97	□□□□□ -1.77
CDC48	YDL126C	MRP49	P32388	137 aa		3.97	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 24 ms