RNA–Protein interactions for RNA: YFR004W

RPN11, Transcript of Metalloprotease subunit of 19S regulatory particle, yeast

Gene RPN11, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPN11	YFR004W	LSM12	P38828	187 aa	Known RBP	5.25	□□□□□ -1.57
RPN11	YFR004W	XBP1	P40489	647 aa		5.25	□□□□□ -1.57
RPN11	YFR004W	YIR035C	P40579	254 aa		5.25	□□□□□ -1.57
RPN11	YFR004W	ERJ5	P43613	295 aa	Predicted RBP	5.25	□□□□□ -1.57
RPN11	YFR004W	MCM22	P47167	239 aa		5.25	□□□□□ -1.57
RPN11	YFR004W	PHB2	P50085	310 aa		5.25	□□□□□ -1.57
RPN11	YFR004W	TAF4	P50105	388 aa		5.25	□□□□□ -1.57
RPN11	YFR004W	YGR126W	P53274	230 aa		5.25	□□□□□ -1.57
RPN11	YFR004W	AAH1	P53909	347 aa		5.25	□□□□□ -1.57
RPN11	YFR004W	CGI121	Q03705	181 aa	Known RBP	5.25	□□□□□ -1.57
RPN11	YFR004W	YML018C	Q03730	393 aa		5.25	□□□□□ -1.57
RPN11	YFR004W	YDR248C	Q03786	193 aa		5.25	□□□□□ -1.57
RPN11	YFR004W	YDR102C	Q03864	110 aa		5.25	□□□□□ -1.57
RPN11	YFR004W	HNT1	Q04344	158 aa	Known RBP	5.25	□□□□□ -1.57
RPN11	YFR004W	CTS2	Q06350	511 aa		5.25	□□□□□ -1.57
RPN11	YFR004W	MIM1	Q08176	113 aa		5.25	□□□□□ -1.57
RPN11	YFR004W	VTS1	Q08831	523 aa	Known RBP RIP-Chip data	5.25	□□□□□ -1.57	not detected
RPN11	YFR004W	PET20	Q99373	253 aa		5.25	□□□□□ -1.57
RPN11	YFR004W	DYN1	P36022	4092 aa		5.25	□□□□□ -1.57
RPN11	YFR004W	REP2	P03872	296 aa		5.24	□□□□□ -1.57
RPN11	YFR004W	MSW1	P04803	379 aa		5.24	□□□□□ -1.57
RPN11	YFR004W	MAK32	P23060	363 aa		5.24	□□□□□ -1.57
RPN11	YFR004W	ERG8	P24521	451 aa		5.24	□□□□□ -1.57
RPN11	YFR004W	ARO4	P32449	370 aa	Known RBP	5.24	□□□□□ -1.57
RPN11	YFR004W	VAM7	P32912	316 aa		5.24	□□□□□ -1.57
RPN11	YFR004W	COS9	P36034	407 aa		5.24	□□□□□ -1.57
RPN11	YFR004W	FRM2	P37261	193 aa		5.24	□□□□□ -1.57
RPN11	YFR004W	CDS1	P38221	457 aa		5.24	□□□□□ -1.57
RPN11	YFR004W	APD1	P38281	316 aa		5.24	□□□□□ -1.57
RPN11	YFR004W	UMP1	P38293	148 aa		5.24	□□□□□ -1.57
RPN11	YFR004W	GCV3	P39726	170 aa	Predicted RBP	5.24	□□□□□ -1.57
RPN11	YFR004W	SNN1	P48232	102 aa		5.24	□□□□□ -1.57
RPN11	YFR004W	PHO23	P50947	330 aa		5.24	□□□□□ -1.57
RPN11	YFR004W	YGL117W	P53133	265 aa		5.24	□□□□□ -1.57
RPN11	YFR004W	NRK1	P53915	240 aa		5.24	□□□□□ -1.57
RPN11	YFR004W	TIM10	P87108	93 aa		5.24	□□□□□ -1.57
RPN11	YFR004W	NOC4	Q06512	552 aa	Predicted RBP	5.24	□□□□□ -1.57
RPN11	YFR004W	YPR147C	Q06522	304 aa	Known RBP	5.24	□□□□□ -1.57
RPN11	YFR004W	RRT7	Q07829	113 aa		5.24	□□□□□ -1.57
RPN11	YFR004W	RDL2	Q08742	149 aa	Known RBP	5.24	□□□□□ -1.57
RPN11	YFR004W	BLM10	P43583	2143 aa		5.24	□□□□□ -1.57
RPN11	YFR004W	YAL064W-B	O13512	126 aa		5.23	□□□□□ -1.57
RPN11	YFR004W	YLR415C	O13578	112 aa		5.23	□□□□□ -1.57
RPN11	YFR004W	AIM17	P23180	465 aa	Known RBP	5.23	□□□□□ -1.57
RPN11	YFR004W	SCO1	P23833	295 aa		5.23	□□□□□ -1.57
RPN11	YFR004W	SRB6	P32570	121 aa		5.23	□□□□□ -1.57
RPN11	YFR004W	AGA2	P32781	87 aa		5.23	□□□□□ -1.57
RPN11	YFR004W	FIG1	P38224	298 aa		5.23	□□□□□ -1.57
RPN11	YFR004W	ASP1	P38986	381 aa	Predicted RBP	5.23	□□□□□ -1.57
RPN11	YFR004W	ATF1	P40353	525 aa		5.23	□□□□□ -1.57
RPN11	YFR004W	IDP2	P41939	412 aa		5.23	□□□□□ -1.57
RPN11	YFR004W	YDL183C	P48569	320 aa		5.23	□□□□□ -1.57
RPN11	YFR004W	NIF3	P53081	288 aa		5.23	□□□□□ -1.57
RPN11	YFR004W	CAF40	P53829	373 aa		5.23	□□□□□ -1.57
RPN11	YFR004W	RNH201	P53942	307 aa		5.23	□□□□□ -1.57
RPN11	YFR004W	ODC1	Q03028	310 aa		5.23	□□□□□ -1.57
RPN11	YFR004W	NRG1	Q03125	231 aa		5.23	□□□□□ -1.57
RPN11	YFR004W	CAB5	Q03941	241 aa		5.23	□□□□□ -1.57
RPN11	YFR004W	SYM1	Q06563	197 aa		5.23	□□□□□ -1.57
RPN11	YFR004W	SRL2	Q12020	392 aa		5.23	□□□□□ -1.57
RPN11	YFR004W	ATP16	Q12165	160 aa		5.23	□□□□□ -1.57
RPN11	YFR004W	RRI1	Q12468	440 aa		5.23	□□□□□ -1.57
RPN11	YFR004W	VMA9	Q3E7B6	73 aa		5.23	□□□□□ -1.57
RPN11	YFR004W	MRP2	P10663	115 aa	Predicted RBP	5.22	□□□□□ -1.57
RPN11	YFR004W	CPR4	P25334	318 aa		5.22	□□□□□ -1.57
RPN11	YFR004W	ERG3	P32353	365 aa		5.22	□□□□□ -1.57
RPN11	YFR004W	FLO10	P36170	1169 aa		5.22	□□□□□ -1.57
RPN11	YFR004W	VBA4	Q04602	768 aa	Known RBP	5.22	□□□□□ -1.57
RPN11	YFR004W	BER1	Q06688	274 aa	Known RBP	5.22	□□□□□ -1.57
RPN11	YFR004W	FCF2	Q12035	217 aa	Predicted RBP	5.22	□□□□□ -1.57
RPN11	YFR004W	MCT1	Q12283	360 aa		5.22	□□□□□ -1.57
RPN11	YFR004W	SWM1	Q12379	170 aa		5.22	□□□□□ -1.57
RPN11	YFR004W	YLR146W-A	Q2V2P1	62 aa		5.22	□□□□□ -1.57
RPN11	YFR004W	YLR358C	O13565	187 aa		5.21	□□□□□ -1.58
RPN11	YFR004W	MES1	P00958	751 aa	Known RBP	5.21	□□□□□ -1.58
RPN11	YFR004W	YFR010W-A	P0C5N0	62 aa		5.21	□□□□□ -1.58
RPN11	YFR004W	YLL053C	P0CD98	152 aa		5.21	□□□□□ -1.58
RPN11	YFR004W	ARO3	P14843	370 aa	Known RBP	5.21	□□□□□ -1.58
RPN11	YFR004W	OLE1	P21147	510 aa	Known RBP	5.21	□□□□□ -1.58
RPN11	YFR004W	EHD3	P28817	500 aa		5.21	□□□□□ -1.58
RPN11	YFR004W	MTR2	P34232	184 aa	Known RBP	5.21	□□□□□ -1.58
RPN11	YFR004W	SHO1	P40073	367 aa		5.21	□□□□□ -1.58
RPN11	YFR004W	SLZ1	P40167	298 aa		5.21	□□□□□ -1.58
RPN11	YFR004W	BUL1	P48524	976 aa		5.21	□□□□□ -1.58
RPN11	YFR004W	PNC1	P53184	216 aa	Known RBP	5.21	□□□□□ -1.58
RPN11	YFR004W	MRPL19	P53875	158 aa		5.21	□□□□□ -1.58
RPN11	YFR004W	EST3	Q03096	181 aa		5.21	□□□□□ -1.58
RPN11	YFR004W	GIS1	Q03833	894 aa		5.21	□□□□□ -1.58
RPN11	YFR004W	MCH4	Q08268	501 aa		5.21	□□□□□ -1.58
RPN11	YFR004W	PCC1	Q3E833	88 aa		5.21	□□□□□ -1.58
RPN11	YFR004W	YHR214C-E	Q8TGK0	99 aa		5.21	□□□□□ -1.58
RPN11	YFR004W	Q0144	Q9ZZW2	109 aa		5.21	□□□□□ -1.58
RPN11	YFR004W	CDC36	P06100	191 aa	Predicted RBP	5.2	□□□□□ -1.58
RPN11	YFR004W	UBI4	P0CG63	381 aa	Known RBP	5.2	□□□□□ -1.58
RPN11	YFR004W	ZRC1	P20107	442 aa		5.2	□□□□□ -1.58
RPN11	YFR004W	AFG1	P32317	509 aa		5.2	□□□□□ -1.58
RPN11	YFR004W	ECM25	P32525	599 aa		5.2	□□□□□ -1.58
RPN11	YFR004W	ECM31	P38122	312 aa		5.2	□□□□□ -1.58
RPN11	YFR004W	YPC1	P38298	316 aa		5.2	□□□□□ -1.58
RPN11	YFR004W	YMR262W	P38430	313 aa		5.2	□□□□□ -1.58

Retrieved 100 of 5,963 RNA–protein pairs in 15.1 ms