RNA–Protein interactions for RNA: YDR299W

BFR2, Transcript of Component of the SSU and 90S preribosomes, yeast

Gene BFR2, Length 1,605 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
BFR2	YDR299W	PGD1	P40356	397 aa		0.54	□□□□□ -2.32
BFR2	YDR299W	RPL33B	P41056	107 aa	Known RBP	0.54	□□□□□ -2.32
BFR2	YDR299W	SMD3	P43321	101 aa	Known RBP	0.54	□□□□□ -2.32
BFR2	YDR299W	BNA6	P43619	295 aa		0.54	□□□□□ -2.32
BFR2	YDR299W	GLG2	P47011	380 aa		0.54	□□□□□ -2.32
BFR2	YDR299W	LAP3	Q01532	483 aa	Known RBP RIP-Chip data	0.54	□□□□□ -2.32	not detected
BFR2	YDR299W	RRN5	Q02983	363 aa		0.54	□□□□□ -2.32
BFR2	YDR299W	YDR248C	Q03786	193 aa		0.54	□□□□□ -2.32
BFR2	YDR299W	CDC123	Q05791	360 aa		0.54	□□□□□ -2.32
BFR2	YDR299W	ARR2	Q06597	130 aa		0.54	□□□□□ -2.32
BFR2	YDR299W	YPL162C	Q12042	273 aa		0.54	□□□□□ -2.32
BFR2	YDR299W	YHR086W-A	Q3E746	53 aa		0.54	□□□□□ -2.32
BFR2	YDR299W	NCB2	Q92317	146 aa		0.54	□□□□□ -2.32
BFR2	YDR299W	SWI1	P09547	1314 aa		0.54	□□□□□ -2.32
BFR2	YDR299W	FCY2	P17064	533 aa		0.53	□□□□□ -2.32
BFR2	YDR299W	PET9	P18239	318 aa	Known RBP	0.53	□□□□□ -2.32
BFR2	YDR299W	YCR016W	P25617	290 aa	Known RBP	0.53	□□□□□ -2.32
BFR2	YDR299W	YET1	P35723	206 aa		0.53	□□□□□ -2.32
BFR2	YDR299W	SHE2	P36068	246 aa	Known RBP RIP-Chip data	0.53	□□□□□ -2.32	not detected
BFR2	YDR299W	ECM4	P36156	370 aa		0.53	□□□□□ -2.32
BFR2	YDR299W	MSA2	P36157	363 aa		0.53	□□□□□ -2.32
BFR2	YDR299W	MRPL28	P36527	147 aa		0.53	□□□□□ -2.32
BFR2	YDR299W	ECM33	P38248	429 aa	Known RBP	0.53	□□□□□ -2.32
BFR2	YDR299W	DOG2	P38773	246 aa		0.53	□□□□□ -2.32
BFR2	YDR299W	LSM4	P40070	187 aa	Known RBP	0.53	□□□□□ -2.32
BFR2	YDR299W	RPL13B	P40212	199 aa	Known RBP	0.53	□□□□□ -2.32
BFR2	YDR299W	TIR3	P40552	269 aa		0.53	□□□□□ -2.32
BFR2	YDR299W	CAT5	P41735	233 aa		0.53	□□□□□ -2.32
BFR2	YDR299W	FAR7	P43592	221 aa		0.53	□□□□□ -2.32
BFR2	YDR299W	RPA43	P46669	326 aa		0.53	□□□□□ -2.32
BFR2	YDR299W	RPC17	P47076	161 aa		0.53	□□□□□ -2.32
BFR2	YDR299W	MIC26	P50087	233 aa		0.53	□□□□□ -2.32
BFR2	YDR299W	AIF1	P52923	378 aa		0.53	□□□□□ -2.32
BFR2	YDR299W	SAY1	P53324	424 aa		0.53	□□□□□ -2.32
BFR2	YDR299W	ERV29	P53337	310 aa		0.53	□□□□□ -2.32
BFR2	YDR299W	CUS2	P53830	285 aa	Predicted RBP	0.53	□□□□□ -2.32
BFR2	YDR299W	YNL010W	P53981	241 aa	Known RBP	0.53	□□□□□ -2.32
BFR2	YDR299W	CYT2	Q00873	224 aa		0.53	□□□□□ -2.32
BFR2	YDR299W	PET117	Q02771	107 aa		0.53	□□□□□ -2.32
BFR2	YDR299W	YOL107W	Q12239	342 aa		0.53	□□□□□ -2.32
BFR2	YDR299W	ATG31	Q12421	196 aa		0.53	□□□□□ -2.32
BFR2	YDR299W	PSF1	Q12488	208 aa		0.53	□□□□□ -2.32
BFR2	YDR299W	RPL13A	Q12690	199 aa	Predicted RBP	0.53	□□□□□ -2.32
BFR2	YDR299W	TSC3	Q3E790	80 aa		0.53	□□□□□ -2.32
BFR2	YDR299W	INO80	P53115	1489 aa		0.53	□□□□□ -2.32
BFR2	YDR299W	MET5	P47169	1442 aa		0.53	□□□□□ -2.33
BFR2	YDR299W	RPO26	P20435	155 aa		0.53	□□□□□ -2.33
BFR2	YDR299W	ATG22	P25568	528 aa		0.53	□□□□□ -2.33
BFR2	YDR299W	EHD3	P28817	500 aa		0.53	□□□□□ -2.33
BFR2	YDR299W	VMA6	P32366	345 aa	Known RBP	0.53	□□□□□ -2.33
BFR2	YDR299W	TVP38	P36164	337 aa		0.53	□□□□□ -2.33
BFR2	YDR299W	YBR096W	P38256	230 aa		0.53	□□□□□ -2.33
BFR2	YDR299W	UMP1	P38293	148 aa		0.53	□□□□□ -2.33
BFR2	YDR299W	YBR209W	P38311	105 aa		0.53	□□□□□ -2.33
BFR2	YDR299W	YBR220C	P38318	560 aa		0.53	□□□□□ -2.33
BFR2	YDR299W	POP4	P38336	279 aa		0.53	□□□□□ -2.33
BFR2	YDR299W	CTR2	P38865	189 aa		0.53	□□□□□ -2.33
BFR2	YDR299W	YHR180W	P38868	163 aa		0.53	□□□□□ -2.33
BFR2	YDR299W	PEX17	P40155	199 aa		0.53	□□□□□ -2.33
BFR2	YDR299W	AGE2	P40529	298 aa		0.53	□□□□□ -2.33
BFR2	YDR299W	GCN20	P43535	752 aa	Known RBP	0.53	□□□□□ -2.33
BFR2	YDR299W	BRR6	P53062	197 aa		0.53	□□□□□ -2.33
BFR2	YDR299W	YGL034C	P53186	121 aa		0.53	□□□□□ -2.33
BFR2	YDR299W	FYV6	P53913	173 aa		0.53	□□□□□ -2.33
BFR2	YDR299W	SML1	Q04964	104 aa		0.53	□□□□□ -2.33
BFR2	YDR299W	YLR179C	Q06252	201 aa	Known RBP	0.53	□□□□□ -2.33
BFR2	YDR299W	ANT1	Q06497	328 aa		0.53	□□□□□ -2.33
BFR2	YDR299W	RRT8	Q08219	342 aa		0.53	□□□□□ -2.33
BFR2	YDR299W	NIP7	Q08962	181 aa	Known RBP	0.53	□□□□□ -2.33
BFR2	YDR299W	RUD3	Q12234	484 aa	Known RBP	0.53	□□□□□ -2.33
BFR2	YDR299W	YLR126C	Q12288	251 aa		0.53	□□□□□ -2.33
BFR2	YDR299W	YDL180W	Q12301	547 aa		0.53	□□□□□ -2.33
BFR2	YDR299W	UBR2	Q07963	1872 aa		0.52	□□□□□ -2.33
BFR2	YDR299W	REP2	P03872	296 aa		0.52	□□□□□ -2.33
BFR2	YDR299W	GPA2	P10823	449 aa		0.52	□□□□□ -2.33
BFR2	YDR299W	FPR1	P20081	114 aa	Known RBP	0.52	□□□□□ -2.33
BFR2	YDR299W	CDC10	P25342	322 aa	Known RBP	0.52	□□□□□ -2.33
BFR2	YDR299W	FZF1	P32805	299 aa		0.52	□□□□□ -2.33
BFR2	YDR299W	RPT5	P33297	434 aa	Known RBP	0.52	□□□□□ -2.33
BFR2	YDR299W	MSN4	P33749	630 aa		0.52	□□□□□ -2.33
BFR2	YDR299W	APS1	P35181	156 aa		0.52	□□□□□ -2.33
BFR2	YDR299W	YKR045C	P36138	183 aa		0.52	□□□□□ -2.33
BFR2	YDR299W	TCD1	P38756	429 aa		0.52	□□□□□ -2.33
BFR2	YDR299W	YNL217W	P40152	326 aa		0.52	□□□□□ -2.33
BFR2	YDR299W	YJR149W	P47177	404 aa		0.52	□□□□□ -2.33
BFR2	YDR299W	YNL134C	P53912	376 aa	Known RBP	0.52	□□□□□ -2.33
BFR2	YDR299W	SWP1	Q02795	286 aa		0.52	□□□□□ -2.33
BFR2	YDR299W	SNZ1	Q03148	297 aa		0.52	□□□□□ -2.33
BFR2	YDR299W	LPP1	Q04396	274 aa		0.52	□□□□□ -2.33
BFR2	YDR299W	GPM2	Q12008	311 aa		0.52	□□□□□ -2.33
BFR2	YDR299W	YOR029W	Q12243	111 aa		0.52	□□□□□ -2.33
BFR2	YDR299W	RAS2	P01120	322 aa	Known RBP	0.51	□□□□□ -2.33
BFR2	YDR299W	URA5	P13298	226 aa	Known RBP	0.51	□□□□□ -2.33
BFR2	YDR299W	URA6	P15700	204 aa		0.51	□□□□□ -2.33
BFR2	YDR299W	MAG1	P22134	296 aa	Known RBP	0.51	□□□□□ -2.33
BFR2	YDR299W	PPA2	P28239	310 aa		0.51	□□□□□ -2.33
BFR2	YDR299W	BMH2	P34730	273 aa	Known RBP	0.51	□□□□□ -2.33
BFR2	YDR299W	UPS2	P35200	230 aa		0.51	□□□□□ -2.33
BFR2	YDR299W	YBR219C	P38317	127 aa		0.51	□□□□□ -2.33
BFR2	YDR299W	YBR285W	P38354	144 aa		0.51	□□□□□ -2.33

Retrieved 100 of 5,963 RNA–protein pairs in 65.4 ms