RNA–Protein interactions for RNA: YDR185C

UPS3, Transcript of Mitochondrial protein of unknown function, yeast

Gene UPS3, Length 540 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UPS3	YDR185C	GPI18	P38211	433 aa		4.28	□□□□□ -1.72
UPS3	YDR185C	SHG1	P38337	142 aa		4.28	□□□□□ -1.72
UPS3	YDR185C	SRP14	P38985	146 aa		4.28	□□□□□ -1.72
UPS3	YDR185C	MTW1	P39731	289 aa		4.28	□□□□□ -1.72
UPS3	YDR185C	EDC2	P40023	145 aa	Predicted RBP	4.28	□□□□□ -1.72
UPS3	YDR185C	MEP2	P41948	499 aa		4.28	□□□□□ -1.72
UPS3	YDR185C	BXI1	P48558	297 aa		4.28	□□□□□ -1.72
UPS3	YDR185C	YGL118C	P53132	145 aa		4.28	□□□□□ -1.72
UPS3	YDR185C	SSU72	P53538	206 aa	Predicted RBP	4.28	□□□□□ -1.72
UPS3	YDR185C	SWT21	P53873	357 aa	Predicted RBP	4.28	□□□□□ -1.72
UPS3	YDR185C	YNL046W	P53956	172 aa		4.28	□□□□□ -1.72
UPS3	YDR185C	INM2	Q05533	292 aa		4.28	□□□□□ -1.72
UPS3	YDR185C	YNG1	Q08465	219 aa		4.28	□□□□□ -1.72
UPS3	YDR185C	YOR186W	Q08560	144 aa		4.28	□□□□□ -1.72
UPS3	YDR185C	YMR230W-A	Q3E7B5	62 aa		4.28	□□□□□ -1.72
UPS3	YDR185C	YBL008W-A	Q3E821	79 aa		4.28	□□□□□ -1.72
UPS3	YDR185C	MET2	P08465	486 aa		4.27	□□□□□ -1.73
UPS3	YDR185C	SRY1	P36007	326 aa		4.27	□□□□□ -1.73
UPS3	YDR185C	YIL054W	P40524	105 aa		4.27	□□□□□ -1.73
UPS3	YDR185C	MIC19	P43594	170 aa		4.27	□□□□□ -1.73
UPS3	YDR185C	YGR018C	P53211	109 aa		4.27	□□□□□ -1.73
UPS3	YDR185C	YGR067C	P53243	804 aa		4.27	□□□□□ -1.73
UPS3	YDR185C	YMR279C	Q03263	540 aa		4.27	□□□□□ -1.73
UPS3	YDR185C	RRG7	Q08774	242 aa	Predicted RBP	4.27	□□□□□ -1.73
UPS3	YDR185C	ERD2	P18414	219 aa		4.26	□□□□□ -1.73
UPS3	YDR185C	SWD3	P38123	315 aa		4.26	□□□□□ -1.73
UPS3	YDR185C	ARN2	P38724	620 aa		4.26	□□□□□ -1.73
UPS3	YDR185C	RPE1	P46969	238 aa		4.26	□□□□□ -1.73
UPS3	YDR185C	YJR056C	P47115	236 aa		4.26	□□□□□ -1.73
UPS3	YDR185C	SYF2	P53277	215 aa	Predicted RBP	4.26	□□□□□ -1.73
UPS3	YDR185C	YDR248C	Q03786	193 aa		4.26	□□□□□ -1.73
UPS3	YDR185C	TIR4	Q12218	487 aa	Predicted RBP	4.26	□□□□□ -1.73
UPS3	YDR185C	DFM1	Q12743	341 aa	Known RBP	4.26	□□□□□ -1.73
UPS3	YDR185C	COX4	P04037	155 aa		4.25	□□□□□ -1.73
UPS3	YDR185C	YOL163W	P0CF20	169 aa		4.25	□□□□□ -1.73
UPS3	YDR185C	ZWF1	P11412	505 aa	Known RBP	4.25	□□□□□ -1.73
UPS3	YDR185C	GCN3	P14741	305 aa		4.25	□□□□□ -1.73
UPS3	YDR185C	TRR1	P29509	319 aa	Known RBP	4.25	□□□□□ -1.73
UPS3	YDR185C	OAC1	P32332	324 aa		4.25	□□□□□ -1.73
UPS3	YDR185C	PRY2	P36110	329 aa		4.25	□□□□□ -1.73
UPS3	YDR185C	FES1	P38260	290 aa		4.25	□□□□□ -1.73
UPS3	YDR185C	SSH1	P38353	490 aa	Known RBP	4.25	□□□□□ -1.73
UPS3	YDR185C	RRT13	P40042	185 aa		4.25	□□□□□ -1.73
UPS3	YDR185C	PEX17	P40155	199 aa		4.25	□□□□□ -1.73
UPS3	YDR185C	YGL262W	P53054	175 aa		4.25	□□□□□ -1.73
UPS3	YDR185C	YGL034C	P53186	121 aa		4.25	□□□□□ -1.73
UPS3	YDR185C	GTR2	P53290	341 aa		4.25	□□□□□ -1.73
UPS3	YDR185C	WTM1	Q12363	437 aa	Known RBP	4.25	□□□□□ -1.73
UPS3	YDR185C	COS2	P0CX12	379 aa		4.24	□□□□□ -1.73
UPS3	YDR185C	COS3	P0CX13	379 aa		4.24	□□□□□ -1.73
UPS3	YDR185C	GCY1	P14065	312 aa	Known RBP RIP-Chip data	4.24	□□□□□ -1.73	not detected
UPS3	YDR185C	UBC6	P33296	250 aa	Predicted RBP	4.24	□□□□□ -1.73
UPS3	YDR185C	APS1	P35181	156 aa		4.24	□□□□□ -1.73
UPS3	YDR185C	MRPL28	P36527	147 aa		4.24	□□□□□ -1.73
UPS3	YDR185C	SMP1	P38128	452 aa		4.24	□□□□□ -1.73
UPS3	YDR185C	COG3	P40094	801 aa		4.24	□□□□□ -1.73
UPS3	YDR185C	COS4	P43542	379 aa		4.24	□□□□□ -1.73
UPS3	YDR185C	YPI1	P43587	155 aa		4.24	□□□□□ -1.73
UPS3	YDR185C	ILM1	P47155	203 aa		4.24	□□□□□ -1.73
UPS3	YDR185C	SNO1	Q03144	224 aa		4.24	□□□□□ -1.73
UPS3	YDR185C	NNT1	Q05874	261 aa		4.24	□□□□□ -1.73
UPS3	YDR185C	YAL067W-A	Q8TGK6	75 aa		4.24	□□□□□ -1.73
UPS3	YDR185C	GCN1	P33892	2672 aa	Known RBP	4.24	□□□□□ -1.73
UPS3	YDR185C	SWI1	P09547	1314 aa		4.23	□□□□□ -1.73
UPS3	YDR185C	QCR2	P07257	368 aa		4.23	□□□□□ -1.73
UPS3	YDR185C	PUT1	P09368	476 aa		4.23	□□□□□ -1.73
UPS3	YDR185C	CSG2	P35206	410 aa		4.23	□□□□□ -1.73
UPS3	YDR185C	DBP7	P36120	742 aa	Known RBP	4.23	□□□□□ -1.73
UPS3	YDR185C	ECM34	P38728	170 aa		4.23	□□□□□ -1.73
UPS3	YDR185C	ASP1	P38986	381 aa	Predicted RBP	4.23	□□□□□ -1.73
UPS3	YDR185C	IMP4	P53941	290 aa	Known RBP	4.23	□□□□□ -1.73
UPS3	YDR185C	YLR460C	P54007	376 aa		4.23	□□□□□ -1.73
UPS3	YDR185C	ACT1	P60010	375 aa	Known RBP	4.23	□□□□□ -1.73
UPS3	YDR185C	MSA1	Q08471	629 aa		4.23	□□□□□ -1.73
UPS3	YDR185C	YPR011C	Q12251	326 aa		4.23	□□□□□ -1.73
UPS3	YDR185C	YPL229W	Q99395	206 aa		4.23	□□□□□ -1.73
UPS3	YDR185C	ECM33	P38248	429 aa	Known RBP	4.22	□□□□□ -1.73
UPS3	YDR185C	YER121W	P40076	114 aa		4.22	□□□□□ -1.73
UPS3	YDR185C	RTC4	P53850	401 aa		4.22	□□□□□ -1.73
UPS3	YDR185C	ECM19	Q06011	112 aa		4.22	□□□□□ -1.73
UPS3	YDR185C	NOC4	Q06512	552 aa	Predicted RBP	4.22	□□□□□ -1.73
UPS3	YDR185C	USB1	Q12208	290 aa	Known RBP	4.22	□□□□□ -1.73
UPS3	YDR185C	YPS3	Q12303	508 aa		4.22	□□□□□ -1.73
UPS3	YDR185C	FLO11	P08640	1367 aa		4.22	□□□□□ -1.73
UPS3	YDR185C	CKA2	P19454	339 aa		4.21	□□□□□ -1.74
UPS3	YDR185C	ISY1	P21374	235 aa	Predicted RBP	4.21	□□□□□ -1.74
UPS3	YDR185C	MRPL27	P36526	146 aa	Predicted RBP	4.21	□□□□□ -1.74
UPS3	YDR185C	AME1	P38313	324 aa		4.21	□□□□□ -1.74
UPS3	YDR185C	FAR7	P43592	221 aa		4.21	□□□□□ -1.74
UPS3	YDR185C	CAX4	P53223	239 aa		4.21	□□□□□ -1.74
UPS3	YDR185C	YNL140C	P53910	189 aa		4.21	□□□□□ -1.74
UPS3	YDR185C	NRK1	P53915	240 aa		4.21	□□□□□ -1.74
UPS3	YDR185C	AGC1	Q12482	902 aa		4.21	□□□□□ -1.74
UPS3	YDR185C	FKS3	Q04952	1785 aa		4.21	□□□□□ -1.74
UPS3	YDR185C	ECM14	P38836	430 aa		4.2	□□□□□ -1.74
UPS3	YDR185C	YKE4	P40544	346 aa		4.2	□□□□□ -1.74
UPS3	YDR185C	SYS1	P41544	203 aa		4.2	□□□□□ -1.74
UPS3	YDR185C	YJL028W	P47062	111 aa		4.2	□□□□□ -1.74
UPS3	YDR185C	TMA22	P47089	198 aa	Predicted RBP	4.2	□□□□□ -1.74
UPS3	YDR185C	ERV29	P53337	310 aa		4.2	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 44.1 ms