RNA–Protein interactions for RNA: YDR049W

VMS1, Transcript of Component of a Cdc48p-complex involved in protein quality control, yeast

Gene VMS1, Length 1,899 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VMS1	YDR049W	MAK32	P23060	363 aa		4.96	□□□□□ -1.61
VMS1	YDR049W	CDC50	P25656	391 aa		4.96	□□□□□ -1.61
VMS1	YDR049W	MRP49	P32388	137 aa		4.96	□□□□□ -1.61
VMS1	YDR049W	YNK1	P36010	153 aa	Known RBP	4.96	□□□□□ -1.61
VMS1	YDR049W	PRY1	P47032	299 aa		4.96	□□□□□ -1.61
VMS1	YDR049W	AIM25	P47140	327 aa		4.96	□□□□□ -1.61
VMS1	YDR049W	FLC3	P53121	802 aa		4.96	□□□□□ -1.61
VMS1	YDR049W	ORM1	P53224	222 aa		4.96	□□□□□ -1.61
VMS1	YDR049W	HST4	P53688	370 aa		4.96	□□□□□ -1.61
VMS1	YDR049W	ATP23	P53722	227 aa		4.96	□□□□□ -1.61
VMS1	YDR049W	SUR7	P54003	302 aa		4.96	□□□□□ -1.61
VMS1	YDR049W	PET191	Q02772	108 aa		4.96	□□□□□ -1.61
VMS1	YDR049W	HPT1	Q04178	221 aa	Known RBP	4.96	□□□□□ -1.61
VMS1	YDR049W	YMR253C	Q04835	414 aa		4.96	□□□□□ -1.61
VMS1	YDR049W	YLR446W	Q06204	433 aa		4.96	□□□□□ -1.61
VMS1	YDR049W	HRT3	Q12347	344 aa		4.96	□□□□□ -1.61
VMS1	YDR049W	TRM3	Q07527	1436 aa		4.96	□□□□□ -1.62
VMS1	YDR049W	CDC7	P06243	507 aa		4.96	□□□□□ -1.62
VMS1	YDR049W	NSP1	P14907	823 aa	Known RBP	4.96	□□□□□ -1.62
VMS1	YDR049W	PEX34	P25584	144 aa		4.96	□□□□□ -1.62
VMS1	YDR049W	TRM12	Q04235	462 aa		4.96	□□□□□ -1.62
VMS1	YDR049W	YDL218W	Q07629	317 aa		4.96	□□□□□ -1.62
VMS1	YDR049W	PRM4	Q12498	284 aa		4.96	□□□□□ -1.62
VMS1	YDR049W	DDI2	P0CH63	225 aa		4.95	□□□□□ -1.62
VMS1	YDR049W	DDI3	P0CH64	225 aa		4.95	□□□□□ -1.62
VMS1	YDR049W	YAR066W	P0CX18	203 aa		4.95	□□□□□ -1.62
VMS1	YDR049W	YHR214W	P0CX19	203 aa		4.95	□□□□□ -1.62
VMS1	YDR049W	AHC2	P25649	128 aa		4.95	□□□□□ -1.62
VMS1	YDR049W	YMC1	P32331	307 aa		4.95	□□□□□ -1.62
VMS1	YDR049W	HYM1	P32464	399 aa		4.95	□□□□□ -1.62
VMS1	YDR049W	KAE1	P36132	386 aa		4.95	□□□□□ -1.62
VMS1	YDR049W	ILM1	P47155	203 aa		4.95	□□□□□ -1.62
VMS1	YDR049W	ARK1	P53974	638 aa		4.95	□□□□□ -1.62
VMS1	YDR049W	YLR224W	Q05947	369 aa		4.95	□□□□□ -1.62
VMS1	YDR049W	FDH1	Q08911	376 aa		4.95	□□□□□ -1.62
VMS1	YDR049W	YGK3	Q12222	375 aa	Predicted RBP	4.95	□□□□□ -1.62
VMS1	YDR049W	GEP5	Q12393	293 aa		4.95	□□□□□ -1.62
VMS1	YDR049W	TFC7	Q12415	435 aa		4.95	□□□□□ -1.62
VMS1	YDR049W	SNF2	P22082	1703 aa		4.95	□□□□□ -1.62
VMS1	YDR049W	UBI4	P0CG63	381 aa	Known RBP	4.94	□□□□□ -1.62
VMS1	YDR049W	PHO13	P19881	312 aa		4.94	□□□□□ -1.62
VMS1	YDR049W	ERG24	P32462	438 aa	Known RBP	4.94	□□□□□ -1.62
VMS1	YDR049W	AEP1	P32493	518 aa		4.94	□□□□□ -1.62
VMS1	YDR049W	ARG2	P40360	574 aa		4.94	□□□□□ -1.62
VMS1	YDR049W	LGE1	Q02796	332 aa	Known RBP	4.94	□□□□□ -1.62
VMS1	YDR049W	YPL113C	Q02961	396 aa		4.94	□□□□□ -1.62
VMS1	YDR049W	LIP2	Q06005	328 aa		4.94	□□□□□ -1.62
VMS1	YDR049W	SHH4	Q06236	168 aa		4.94	□□□□□ -1.62
VMS1	YDR049W	LOA1	Q06508	300 aa		4.94	□□□□□ -1.62
VMS1	YDR049W	YAP7	Q08182	245 aa		4.94	□□□□□ -1.62
VMS1	YDR049W	BNI1	P41832	1953 aa		4.94	□□□□□ -1.62
VMS1	YDR049W	LTE1	P07866	1435 aa		4.94	□□□□□ -1.62
VMS1	YDR049W	SEC4	P07560	215 aa	Known RBP	4.94	□□□□□ -1.62
VMS1	YDR049W	RPL2A	P0CX45	254 aa	Known RBP	4.94	□□□□□ -1.62
VMS1	YDR049W	RPL2B	P0CX46	254 aa	Known RBP	4.94	□□□□□ -1.62
VMS1	YDR049W	YCR100C	P25606	316 aa		4.94	□□□□□ -1.62
VMS1	YDR049W	YBR220C	P38318	560 aa		4.94	□□□□□ -1.62
VMS1	YDR049W	YEA4	P40004	342 aa		4.94	□□□□□ -1.62
VMS1	YDR049W	SOL1	P50278	321 aa		4.94	□□□□□ -1.62
VMS1	YDR049W	YDR391C	Q04170	232 aa		4.94	□□□□□ -1.62
VMS1	YDR049W	CNL1	Q06333	122 aa		4.94	□□□□□ -1.62
VMS1	YDR049W	THI20	Q08224	551 aa		4.94	□□□□□ -1.62
VMS1	YDR049W	SLM3	Q12093	417 aa		4.94	□□□□□ -1.62
VMS1	YDR049W	ATG22	P25568	528 aa		4.93	□□□□□ -1.62
VMS1	YDR049W	APS1	P35181	156 aa		4.93	□□□□□ -1.62
VMS1	YDR049W	PAN3	P36102	679 aa	Predicted RBP	4.93	□□□□□ -1.62
VMS1	YDR049W	MRP21	P38175	177 aa		4.93	□□□□□ -1.62
VMS1	YDR049W	RPS20	P38701	121 aa	Known RBP	4.93	□□□□□ -1.62
VMS1	YDR049W	COS8	P38723	381 aa		4.93	□□□□□ -1.62
VMS1	YDR049W	XBP1	P40489	647 aa		4.93	□□□□□ -1.62
VMS1	YDR049W	ARO8	P53090	500 aa	Known RBP	4.93	□□□□□ -1.62
VMS1	YDR049W	GMC1	Q04399	608 aa		4.93	□□□□□ -1.62
VMS1	YDR049W	YPL229W	Q99395	206 aa		4.93	□□□□□ -1.62
VMS1	YDR049W	MLP1	Q02455	1875 aa	Known RBP	4.92	□□□□□ -1.62
VMS1	YDR049W	TIP1	P27654	210 aa	Predicted RBP	4.92	□□□□□ -1.62
VMS1	YDR049W	SHE2	P36068	246 aa	Known RBP RIP-Chip data	4.92	□□□□□ -1.62	not detected
VMS1	YDR049W	PMU1	P36069	295 aa		4.92	□□□□□ -1.62
VMS1	YDR049W	ARN2	P38724	620 aa		4.92	□□□□□ -1.62
VMS1	YDR049W	APQ12	P40532	138 aa		4.92	□□□□□ -1.62
VMS1	YDR049W	ORC5	P50874	479 aa		4.92	□□□□□ -1.62
VMS1	YDR049W	YGL101W	P53144	215 aa		4.92	□□□□□ -1.62
VMS1	YDR049W	NUP100	Q02629	959 aa		4.92	□□□□□ -1.62
VMS1	YDR049W	ODC1	Q03028	310 aa		4.92	□□□□□ -1.62
VMS1	YDR049W	YML018C	Q03730	393 aa		4.92	□□□□□ -1.62
VMS1	YDR049W	IRC10	Q08118	586 aa		4.92	□□□□□ -1.62
VMS1	YDR049W	TIM18	Q08749	192 aa		4.92	□□□□□ -1.62
VMS1	YDR049W	RRG7	Q08774	242 aa	Predicted RBP	4.92	□□□□□ -1.62
VMS1	YDR049W	DOP1	Q03921	1698 aa		4.92	□□□□□ -1.62
VMS1	YDR049W	DRS2	P39524	1355 aa		4.92	□□□□□ -1.62
VMS1	YDR049W	RPL7A	P05737	244 aa	Known RBP	4.92	□□□□□ -1.62
VMS1	YDR049W	GPA2	P10823	449 aa		4.92	□□□□□ -1.62
VMS1	YDR049W	SFC1	P33303	322 aa		4.92	□□□□□ -1.62
VMS1	YDR049W	TSA1	P34760	196 aa	Known RBP	4.92	□□□□□ -1.62
VMS1	YDR049W	ARN1	P38731	627 aa		4.92	□□□□□ -1.62
VMS1	YDR049W	BUL1	P48524	976 aa		4.92	□□□□□ -1.62
VMS1	YDR049W	LSM7	P53905	115 aa	Known RBP	4.92	□□□□□ -1.62
VMS1	YDR049W	COF1	Q03048	143 aa	Known RBP	4.92	□□□□□ -1.62
VMS1	YDR049W	RPL7B	Q12213	244 aa	Known RBP	4.92	□□□□□ -1.62
VMS1	YDR049W	SNF4	P12904	322 aa		4.91	□□□□□ -1.62
VMS1	YDR049W	RPC19	P28000	142 aa	Known RBP	4.91	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 36.2 ms