RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 ALDH18A1P54886 795 aaKnown RBP13.98□□□□□ -0.17
USP40-208ENST00000450966 LRRC63Q05C16 580 aa13.98□□□□□ -0.17
USP40-208ENST00000450966 MTF1Q14872 753 aa13.98□□□□□ -0.17
USP40-208ENST00000450966 MICU2Q8IYU8 434 aa13.98□□□□□ -0.17
USP40-208ENST00000450966 ZNF786Q8N393 782 aa13.98□□□□□ -0.17
USP40-208ENST00000450966 SNF8Q96H20 258 aa13.98□□□□□ -0.17
USP40-208ENST00000450966 FAM167AQ96KS9 214 aa13.98□□□□□ -0.17
USP40-208ENST00000450966 ANKZF1Q9H8Y5 726 aa13.98□□□□□ -0.17
USP40-208ENST00000450966 POLD4Q9HCU8 107 aa13.98□□□□□ -0.17
USP40-208ENST00000450966 RSL24D1Q9UHA3 163 aaKnown RBP13.98□□□□□ -0.17
USP40-208ENST00000450966 DSEQ9UL01 958 aa13.98□□□□□ -0.17
USP40-208ENST00000450966 EVPLLA8MZ36 301 aa13.97□□□□□ -0.17
USP40-208ENST00000450966 NCK2O43639 380 aa13.97□□□□□ -0.17
USP40-208ENST00000450966 CDC25CP30307 473 aa13.97□□□□□ -0.17
USP40-208ENST00000450966 PTGS2P35354 604 aa13.97□□□□□ -0.17
USP40-208ENST00000450966 RAB27AP51159 221 aa13.97□□□□□ -0.17
USP40-208ENST00000450966 BNC1Q01954 994 aa13.97□□□□□ -0.17
USP40-208ENST00000450966 SMYD4Q8IYR2 804 aaPredicted RBP13.97□□□□□ -0.17
USP40-208ENST00000450966 COPG2Q9UBF2 871 aa13.97□□□□□ -0.17
USP40-208ENST00000450966 DDX25Q9UHL0 483 aaKnown RBP13.97□□□□□ -0.17
USP40-208ENST00000450966 FEM1BQ9UK73 627 aa13.97□□□□□ -0.17
USP40-208ENST00000450966 RBM47A0AV96 593 aaKnown RBP13.97□□□□□ -0.17
USP40-208ENST00000450966 ADCY6O43306 1168 aa13.97□□□□□ -0.17
USP40-208ENST00000450966 KRT16P08779 473 aa13.97□□□□□ -0.17
USP40-208ENST00000450966 CRKP46108 304 aa13.97□□□□□ -0.17
USP40-208ENST00000450966 BBS9Q3SYG4 887 aa13.97□□□□□ -0.17
USP40-208ENST00000450966 SLC7A3Q8WY07 619 aa13.97□□□□□ -0.17
USP40-208ENST00000450966 PGM3O95394 542 aa13.97□□□□□ -0.17
USP40-208ENST00000450966 GAP43P17677 238 aa13.97□□□□□ -0.17
USP40-208ENST00000450966 TECP42680 631 aa13.97□□□□□ -0.17
USP40-208ENST00000450966 CCT3P49368 545 aaKnown RBP13.97□□□□□ -0.17
USP40-208ENST00000450966 USP4Q13107 963 aa13.97□□□□□ -0.17
USP40-208ENST00000450966 MTA1Q13330 715 aa13.97□□□□□ -0.17
USP40-208ENST00000450966 MPP3Q13368 585 aa13.97□□□□□ -0.17
USP40-208ENST00000450966 TRIP13Q15645 432 aaPredicted RBP13.97□□□□□ -0.17
USP40-208ENST00000450966 SCYL2Q6P3W7 929 aa13.97□□□□□ -0.17
USP40-208ENST00000450966 ZNRF3Q9ULT6 936 aa13.97□□□□□ -0.17
USP40-208ENST00000450966 SURF1Q15526 300 aa13.97□□□□□ -0.17
USP40-208ENST00000450966 LRRC8EQ6NSJ5 796 aa13.97□□□□□ -0.17
USP40-208ENST00000450966 GET4Q7L5D6 327 aaPredicted RBP13.97□□□□□ -0.17
USP40-208ENST00000450966 TRPC4APQ8TEL6 797 aa13.97□□□□□ -0.17
USP40-208ENST00000450966 RNF26Q9BY78 433 aaPredicted RBP13.97□□□□□ -0.17
USP40-208ENST00000450966 INO80BQ9C086 356 aaPredicted RBP13.97□□□□□ -0.17
USP40-208ENST00000450966 PANK4Q9NVE7 773 aa13.97□□□□□ -0.17
USP40-208ENST00000450966 SPATA7Q9P0W8 599 aa13.97□□□□□ -0.17
USP40-208ENST00000450966 RABL2AQ9UBK7 228 aaPredicted RBP13.97□□□□□ -0.17
USP40-208ENST00000450966 SPDYE16A6NNV3 312 aaPredicted RBP13.96□□□□□ -0.17
USP40-208ENST00000450966 AKAP10O43572 662 aa13.96□□□□□ -0.17
USP40-208ENST00000450966 LDHAP00338 332 aaKnown RBP13.96□□□□□ -0.17
USP40-208ENST00000450966 HLA-DPA1P20036 260 aa13.96□□□□□ -0.17
USP40-208ENST00000450966 NLRP11P59045 1033 aaKnown RBP13.96□□□□□ -0.17
USP40-208ENST00000450966 FKBP3Q00688 224 aaKnown RBP13.96□□□□□ -0.17
USP40-208ENST00000450966 SPDYE2Q495Y8 402 aa13.96□□□□□ -0.17
USP40-208ENST00000450966 ZNF618Q5T7W0 954 aa13.96□□□□□ -0.17
USP40-208ENST00000450966 STX12Q86Y82 276 aa13.96□□□□□ -0.17
USP40-208ENST00000450966 OR2W6PQ8NHA6 318 aa13.96□□□□□ -0.17
USP40-208ENST00000450966 MAGEB18Q96M61 343 aa13.96□□□□□ -0.17
USP40-208ENST00000450966 SLC39A2Q9NP94 309 aa13.96□□□□□ -0.17
USP40-208ENST00000450966 SEC31BQ9NQW1 1179 aa13.96□□□□□ -0.17
USP40-208ENST00000450966 CEP72Q9P209 647 aa13.96□□□□□ -0.17
USP40-208ENST00000450966 SEMA3DO95025 777 aa13.96□□□□□ -0.17
USP40-208ENST00000450966 HSD17B3P37058 310 aa13.96□□□□□ -0.17
USP40-208ENST00000450966 RPL5P46777 297 aaKnown RBP13.96□□□□□ -0.17
USP40-208ENST00000450966 TRIM28Q13263 835 aaKnown RBP13.96□□□□□ -0.17
USP40-208ENST00000450966 CNGA2Q16280 664 aa13.96□□□□□ -0.17
USP40-208ENST00000450966 AK8Q96MA6 479 aa13.96□□□□□ -0.17
USP40-208ENST00000450966 ACAP3Q96P50 834 aa13.96□□□□□ -0.17
USP40-208ENST00000450966 GOLPH3LQ9H4A5 285 aa13.96□□□□□ -0.17
USP40-208ENST00000450966 HACD3Q9P035 362 aa13.96□□□□□ -0.17
USP40-208ENST00000450966 ZNF185O15231 689 aa13.96□□□□□ -0.17
USP40-208ENST00000450966 TLR3O15455 904 aaKnown RBP13.96□□□□□ -0.17
USP40-208ENST00000450966 PTPREP23469 700 aa13.96□□□□□ -0.17
USP40-208ENST00000450966 RIPK1Q13546 671 aa13.96□□□□□ -0.17
USP40-208ENST00000450966 SETD3Q86TU7 594 aaPredicted RBP13.96□□□□□ -0.17
USP40-208ENST00000450966 TMEM106CQ9BVX2 250 aa13.96□□□□□ -0.17
USP40-208ENST00000450966 TRIM45Q9H8W5 580 aaPredicted RBP13.96□□□□□ -0.17
USP40-208ENST00000450966 ITM2BQ9Y287 266 aa13.96□□□□□ -0.17
USP40-208ENST00000450966 ARPC4-TTLL3A0A0A6YYG9 625 aa13.96□□□□□ -0.17
USP40-208ENST00000450966 CCDC130P13994 396 aa13.96□□□□□ -0.17
USP40-208ENST00000450966 KIAA1755Q5JYT7 1200 aa13.96□□□□□ -0.17
USP40-208ENST00000450966 FAM26FQ5R3K3 315 aa13.96□□□□□ -0.17
USP40-208ENST00000450966 DEPDC1Q5TB30 811 aa13.96□□□□□ -0.17
USP40-208ENST00000450966 SDR42E1Q8WUS8 393 aa13.96□□□□□ -0.17
USP40-208ENST00000450966 DEPDC1BQ8WUY9 529 aa13.96□□□□□ -0.17
USP40-208ENST00000450966 MAGED4Q96JG8 741 aa13.96□□□□□ -0.17
USP40-208ENST00000450966 SCN3BQ9NY72 215 aa13.96□□□□□ -0.17
USP40-208ENST00000450966 SEL1LQ9UBV2 794 aa13.96□□□□□ -0.17
USP40-208ENST00000450966 RPL26L1Q9UNX3 145 aaKnown RBP13.96□□□□□ -0.17
USP40-208ENST00000450966 HPS5Q9UPZ3 1129 aa13.96□□□□□ -0.17
USP40-208ENST00000450966 TRIM17Q9Y577 477 aa13.96□□□□□ -0.17
USP40-208ENST00000450966 SRPRBQ9Y5M8 271 aaKnown RBP13.96□□□□□ -0.17
USP40-208ENST00000450966 TSC22D2O75157 780 aa13.96□□□□□ -0.18
USP40-208ENST00000450966 WFS1O76024 890 aa13.96□□□□□ -0.18
USP40-208ENST00000450966 BORCS5Q969J3 196 aa13.96□□□□□ -0.18
USP40-208ENST00000450966 OTUD5Q96G74 571 aa13.96□□□□□ -0.18
USP40-208ENST00000450966 CCSER2Q9H7U1 834 aa13.96□□□□□ -0.18
USP40-208ENST00000450966 SUN2Q9UH99 717 aa13.96□□□□□ -0.18
USP40-208ENST00000450966 CNTNAP4Q9C0A0 1308 aa13.95□□□□□ -0.18
USP40-208ENST00000450966 INO80Q9ULG1 1556 aaPredicted RBP13.95□□□□□ -0.18
USP40-208ENST00000450966 CDC42BPBQ9Y5S2 1711 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms