RNA–Protein interactions for RNA: YJL041W

NSP1, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NSP1, Length 2,472 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NSP1	YJL041W	AAH1	P53909	347 aa		3.17	□□□□□ -1.9
NSP1	YJL041W	RNH201	P53942	307 aa		3.17	□□□□□ -1.9
NSP1	YJL041W	SWT1	Q12104	458 aa		3.17	□□□□□ -1.9
NSP1	YJL041W	RAX2	Q12465	1220 aa		3.17	□□□□□ -1.9
NSP1	YJL041W	RIP1	P08067	215 aa		3.17	□□□□□ -1.9
NSP1	YJL041W	SPE1	P08432	466 aa		3.17	□□□□□ -1.9
NSP1	YJL041W	RPL1A	P0CX43	217 aa	Known RBP	3.17	□□□□□ -1.9
NSP1	YJL041W	RPL1B	P0CX44	217 aa	Known RBP	3.17	□□□□□ -1.9
NSP1	YJL041W	STE4	P18851	423 aa		3.17	□□□□□ -1.9
NSP1	YJL041W	YCR102C	P25608	368 aa		3.17	□□□□□ -1.9
NSP1	YJL041W	TRR1	P29509	319 aa	Known RBP	3.17	□□□□□ -1.9
NSP1	YJL041W	SRB5	P32585	307 aa		3.17	□□□□□ -1.9
NSP1	YJL041W	SHE2	P36068	246 aa	Known RBP RIP-Chip data	3.17	□□□□□ -1.9	not detected
NSP1	YJL041W	SDP1	P40479	209 aa		3.17	□□□□□ -1.9
NSP1	YJL041W	ATG18	P43601	500 aa		3.17	□□□□□ -1.9
NSP1	YJL041W	ERJ5	P43613	295 aa	Predicted RBP	3.17	□□□□□ -1.9
NSP1	YJL041W	BNA1	P47096	177 aa		3.17	□□□□□ -1.9
NSP1	YJL041W	SDT1	P53078	280 aa		3.17	□□□□□ -1.9
NSP1	YJL041W	YGR066C	P53242	292 aa		3.17	□□□□□ -1.9
NSP1	YJL041W	SMM1	P53720	384 aa	Known RBP	3.17	□□□□□ -1.9
NSP1	YJL041W	YNL018C	P53976	612 aa		3.17	□□□□□ -1.9
NSP1	YJL041W	SPR6	Q01684	191 aa		3.17	□□□□□ -1.9
NSP1	YJL041W	SKO1	Q02100	647 aa		3.17	□□□□□ -1.9
NSP1	YJL041W	YPR114W	Q06107	315 aa		3.17	□□□□□ -1.9
NSP1	YJL041W	YLR179C	Q06252	201 aa	Known RBP	3.17	□□□□□ -1.9
NSP1	YJL041W	UBX3	Q12229	455 aa		3.17	□□□□□ -1.9
NSP1	YJL041W	MHF2	Q3E829	80 aa		3.17	□□□□□ -1.9
NSP1	YJL041W	KTI11	Q3E840	82 aa		3.17	□□□□□ -1.9
NSP1	YJL041W	YML003W	P0CF16	290 aa		3.16	□□□□□ -1.9
NSP1	YJL041W	NUP1	P20676	1076 aa		3.16	□□□□□ -1.9
NSP1	YJL041W	YBR090C	P38253	122 aa		3.16	□□□□□ -1.9
NSP1	YJL041W	ARO9	P38840	513 aa	Predicted RBP	3.16	□□□□□ -1.9
NSP1	YJL041W	SPO73	P40031	143 aa		3.16	□□□□□ -1.9
NSP1	YJL041W	PEP8	P40335	379 aa		3.16	□□□□□ -1.9
NSP1	YJL041W	ZAP1	P47043	880 aa		3.16	□□□□□ -1.9
NSP1	YJL041W	YJR015W	P47090	510 aa		3.16	□□□□□ -1.9
NSP1	YJL041W	VPS73	P53142	486 aa	Known RBP	3.16	□□□□□ -1.9
NSP1	YJL041W	MTL1	P53214	551 aa		3.16	□□□□□ -1.9
NSP1	YJL041W	VHT1	P53241	593 aa		3.16	□□□□□ -1.9
NSP1	YJL041W	AQR1	P53943	586 aa		3.16	□□□□□ -1.9
NSP1	YJL041W	BNA5	Q05979	453 aa		3.16	□□□□□ -1.9
NSP1	YJL041W	MCH1	Q07376	486 aa		3.16	□□□□□ -1.9
NSP1	YJL041W	TMS1	Q12116	473 aa		3.16	□□□□□ -1.9
NSP1	YJL041W	WTM1	Q12363	437 aa	Known RBP	3.16	□□□□□ -1.9
NSP1	YJL041W	UBI4	P0CG63	381 aa	Known RBP	3.16	□□□□□ -1.9
NSP1	YJL041W	NOP1	P15646	327 aa	Known RBP	3.16	□□□□□ -1.9
NSP1	YJL041W	IMG2	P25642	146 aa	Predicted RBP	3.16	□□□□□ -1.9
NSP1	YJL041W	ERG3	P32353	365 aa		3.16	□□□□□ -1.9
NSP1	YJL041W	PRY2	P36110	329 aa		3.16	□□□□□ -1.9
NSP1	YJL041W	RPL14B	P38754	138 aa	Known RBP	3.16	□□□□□ -1.9
NSP1	YJL041W	CTF8	P38877	133 aa		3.16	□□□□□ -1.9
NSP1	YJL041W	GAA1	P39012	614 aa		3.16	□□□□□ -1.9
NSP1	YJL041W	SMB1	P40018	196 aa	Known RBP	3.16	□□□□□ -1.9
NSP1	YJL041W	MEP2	P41948	499 aa		3.16	□□□□□ -1.9
NSP1	YJL041W	OST3	P48439	350 aa		3.16	□□□□□ -1.9
NSP1	YJL041W	LST7	P53237	242 aa		3.16	□□□□□ -1.9
NSP1	YJL041W	YIP3	P53633	176 aa		3.16	□□□□□ -1.9
NSP1	YJL041W	YNL260C	P53846	198 aa		3.16	□□□□□ -1.9
NSP1	YJL041W	PDR16	P53860	351 aa	Known RBP	3.16	□□□□□ -1.9
NSP1	YJL041W	YNL034W	P53963	612 aa		3.16	□□□□□ -1.9
NSP1	YJL041W	HHT1	P61830	136 aa		3.16	□□□□□ -1.9
NSP1	YJL041W	ABF2	Q02486	183 aa		3.16	□□□□□ -1.9
NSP1	YJL041W	SPP2	Q02521	185 aa		3.16	□□□□□ -1.9
NSP1	YJL041W	YML079W	Q03629	201 aa		3.16	□□□□□ -1.9
NSP1	YJL041W	NOC4	Q06512	552 aa	Predicted RBP	3.16	□□□□□ -1.9
NSP1	YJL041W	GPI11	Q06636	219 aa		3.16	□□□□□ -1.9
NSP1	YJL041W	NRT1	Q08485	598 aa		3.16	□□□□□ -1.9
NSP1	YJL041W	PEX27	Q08580	376 aa		3.16	□□□□□ -1.9
NSP1	YJL041W	RAD28	Q12021	506 aa		3.16	□□□□□ -1.9
NSP1	YJL041W	SLF1	Q12034	447 aa	Known RBP	3.16	□□□□□ -1.9
NSP1	YJL041W	TGS1	Q12052	315 aa		3.16	□□□□□ -1.9
NSP1	YJL041W	MCP1	Q12106	302 aa		3.16	□□□□□ -1.9
NSP1	YJL041W	YDL177C	Q12257	170 aa		3.16	□□□□□ -1.9
NSP1	YJL041W	PRR2	Q12310	699 aa		3.16	□□□□□ -1.9
NSP1	YJL041W	IZH4	Q99393	312 aa		3.16	□□□□□ -1.9
NSP1	YJL041W	SPT15	P13393	240 aa	Known RBP	3.15	□□□□□ -1.9
NSP1	YJL041W	SGF29	P25554	259 aa		3.15	□□□□□ -1.9
NSP1	YJL041W	POP5	P28005	173 aa		3.15	□□□□□ -1.9
NSP1	YJL041W	PUB1	P32588	453 aa	Known RBP RIP-Chip data	3.15	□□□□□ -1.9	not detected
NSP1	YJL041W	GCS1	P35197	352 aa		3.15	□□□□□ -1.9
NSP1	YJL041W	OMA1	P36163	345 aa		3.15	□□□□□ -1.9
NSP1	YJL041W	LDB7	P38210	180 aa		3.15	□□□□□ -1.9
NSP1	YJL041W	TOS1	P38288	455 aa		3.15	□□□□□ -1.9
NSP1	YJL041W	YEL068C	P39977	110 aa		3.15	□□□□□ -1.9
NSP1	YJL041W	XPT1	P47165	209 aa		3.15	□□□□□ -1.9
NSP1	YJL041W	MUP1	P50276	574 aa		3.15	□□□□□ -1.9
NSP1	YJL041W	NIF3	P53081	288 aa		3.15	□□□□□ -1.9
NSP1	YJL041W	YGR015C	P53208	328 aa		3.15	□□□□□ -1.9
NSP1	YJL041W	THG1	P53215	237 aa	Known RBP	3.15	□□□□□ -1.9
NSP1	YJL041W	CRZ1	P53968	678 aa		3.15	□□□□□ -1.9
NSP1	YJL041W	YMR210W	Q03649	449 aa		3.15	□□□□□ -1.9
NSP1	YJL041W	UTP15	Q04305	513 aa	Known RBP	3.15	□□□□□ -1.9
NSP1	YJL041W	ADH6	Q04894	360 aa	Known RBP	3.15	□□□□□ -1.9
NSP1	YJL041W	ACK1	Q07622	623 aa	Predicted RBP	3.15	□□□□□ -1.9
NSP1	YJL041W	IZH3	Q07959	543 aa		3.15	□□□□□ -1.9
NSP1	YJL041W	SCP1	Q08873	200 aa		3.15	□□□□□ -1.9
NSP1	YJL041W	RKI1	Q12189	258 aa		3.15	□□□□□ -1.9
NSP1	YJL041W	JLP1	Q12358	412 aa		3.15	□□□□□ -1.9
NSP1	YJL041W	HIP1	P06775	603 aa		3.15	□□□□□ -1.91
NSP1	YJL041W	HSP26	P15992	214 aa	Known RBP RIP-Chip data	3.15	□□□□□ -1.91	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 42.7 ms