RNA–Protein interactions for RNA: YLR360W

VPS38, Transcript of Part of a Vps34p phosphatidylinositol 3-kinase complex, yeastyeast

Gene VPS38, Length 1,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS38YLR360W SCO1P23833 295 aa1.86□□□□□ -2.11
VPS38YLR360W DAL80P26343 269 aa1.86□□□□□ -2.11
VPS38YLR360W RME1P32338 300 aaKnown RBP1.86□□□□□ -2.11
VPS38YLR360W KDX1P36005 433 aa1.86□□□□□ -2.11
VPS38YLR360W HSM3P38348 480 aa1.86□□□□□ -2.11
VPS38YLR360W YHL049CP38722 271 aa1.86□□□□□ -2.11
VPS38YLR360W TEM1P38987 245 aa1.86□□□□□ -2.11
VPS38YLR360W AGX1P43567 385 aa1.86□□□□□ -2.11
VPS38YLR360W TAD2P47058 250 aa1.86□□□□□ -2.11
VPS38YLR360W YJL016WP47072 561 aa1.86□□□□□ -2.11
VPS38YLR360W SLX9P53251 210 aaPredicted RBP1.86□□□□□ -2.11
VPS38YLR360W EGD1Q02642 157 aaKnown RBP1.86□□□□□ -2.11
VPS38YLR360W BOP2Q06150 570 aa1.86□□□□□ -2.11
VPS38YLR360W ARR2Q06597 130 aa1.86□□□□□ -2.11
VPS38YLR360W SLD7Q08457 257 aa1.86□□□□□ -2.11
VPS38YLR360W GEP5Q12393 293 aa1.86□□□□□ -2.11
VPS38YLR360W CHC1P22137 1653 aaKnown RBP1.85□□□□□ -2.11
VPS38YLR360W TSC11P40061 1430 aa1.85□□□□□ -2.11
VPS38YLR360W SMC4Q12267 1418 aa1.85□□□□□ -2.11
VPS38YLR360W RAD3P06839 778 aa1.85□□□□□ -2.11
VPS38YLR360W GDH2P33327 1092 aaKnown RBP1.85□□□□□ -2.11
VPS38YLR360W NUF2P33895 451 aa1.85□□□□□ -2.11
VPS38YLR360W NRG2P38082 220 aa1.85□□□□□ -2.11
VPS38YLR360W SHC1P39000 512 aa1.85□□□□□ -2.11
VPS38YLR360W NBP1P52919 319 aaPredicted RBP1.85□□□□□ -2.11
VPS38YLR360W MDM34P53083 459 aa1.85□□□□□ -2.11
VPS38YLR360W LSB1P53281 241 aa1.85□□□□□ -2.11
VPS38YLR360W COS6P53344 381 aa1.85□□□□□ -2.11
VPS38YLR360W SWS2P53937 143 aa1.85□□□□□ -2.11
VPS38YLR360W PEX10Q05568 337 aa1.85□□□□□ -2.11
VPS38YLR360W YHR086W-AQ3E746 53 aa1.85□□□□□ -2.11
VPS38YLR360W SCC2Q04002 1493 aa1.85□□□□□ -2.11
VPS38YLR360W USO1P25386 1790 aa1.85□□□□□ -2.11
VPS38YLR360W FKS1P38631 1876 aaKnown RBP1.85□□□□□ -2.11
VPS38YLR360W DNF2Q12675 1612 aa1.84□□□□□ -2.11
VPS38YLR360W YHL026CP38740 315 aa1.84□□□□□ -2.12
VPS38YLR360W PEX18P38855 283 aa1.84□□□□□ -2.12
VPS38YLR360W PRM9P39551 298 aa1.84□□□□□ -2.12
VPS38YLR360W MEP1P40260 492 aa1.84□□□□□ -2.12
VPS38YLR360W NBP35P52920 328 aa1.84□□□□□ -2.12
VPS38YLR360W CAB4P53332 305 aa1.84□□□□□ -2.12
VPS38YLR360W MNT4P53745 580 aa1.84□□□□□ -2.12
VPS38YLR360W YNL247WP53852 767 aaKnown RBP1.84□□□□□ -2.12
VPS38YLR360W TIM11P81449 96 aaPredicted RBP1.84□□□□□ -2.12
VPS38YLR360W HIR3P47171 1648 aa1.83□□□□□ -2.12
VPS38YLR360W GEA1P47102 1408 aaPredicted RBP1.83□□□□□ -2.12
VPS38YLR360W RAD50P12753 1312 aa1.83□□□□□ -2.12
VPS38YLR360W SAC3P46674 1301 aa1.83□□□□□ -2.12
VPS38YLR360W IKI3Q06706 1349 aaKnown RBP1.83□□□□□ -2.12
VPS38YLR360W FAS2P19097 1887 aaKnown RBP1.83□□□□□ -2.12
VPS38YLR360W NTE1Q04958 1679 aa1.83□□□□□ -2.12
VPS38YLR360W ARO1P08566 1588 aaKnown RBP1.83□□□□□ -2.12
VPS38YLR360W ATG2P53855 1592 aa1.83□□□□□ -2.12
VPS38YLR360W IQG1Q12280 1495 aa1.83□□□□□ -2.12
VPS38YLR360W MET16P18408 261 aaPredicted RBP1.83□□□□□ -2.12
VPS38YLR360W MRPL49P40858 161 aaPredicted RBP1.83□□□□□ -2.12
VPS38YLR360W AAH1P53909 347 aa1.83□□□□□ -2.12
VPS38YLR360W ARO80Q04052 950 aa1.83□□□□□ -2.12
VPS38YLR360W SML1Q04964 104 aa1.83□□□□□ -2.12
VPS38YLR360W SMD2Q06217 110 aaKnown RBP1.83□□□□□ -2.12
VPS38YLR360W RUD3Q12234 484 aaKnown RBP1.83□□□□□ -2.12
VPS38YLR360W YCF1P39109 1515 aaKnown RBP1.83□□□□□ -2.12
VPS38YLR360W SWR1Q05471 1514 aa1.83□□□□□ -2.12
VPS38YLR360W RAD9P14737 1309 aa1.82□□□□□ -2.12
VPS38YLR360W NUP159P40477 1460 aa1.82□□□□□ -2.12
VPS38YLR360W ULS1Q08562 1619 aa1.82□□□□□ -2.12
VPS38YLR360W PPH21P23594 369 aa1.82□□□□□ -2.12
VPS38YLR360W DRE2P36152 348 aa1.82□□□□□ -2.12
VPS38YLR360W GRE3P38715 327 aaKnown RBP RIP-Chip data1.82□□□□□ -2.12not detected
VPS38YLR360W BAT2P47176 376 aaKnown RBP1.82□□□□□ -2.12
VPS38YLR360W RAD17P48581 401 aa1.82□□□□□ -2.12
VPS38YLR360W EMI1Q04406 187 aa1.82□□□□□ -2.12
VPS38YLR360W GMC2Q06201 188 aa1.82□□□□□ -2.12
VPS38YLR360W EMC6Q12431 108 aa1.82□□□□□ -2.12
VPS38YLR360W GDB1Q06625 1536 aa1.82□□□□□ -2.12
VPS38YLR360W MLP1Q02455 1875 aaKnown RBP1.81□□□□□ -2.12
VPS38YLR360W HAP1P0CE41 1502 aa1.81□□□□□ -2.12
VPS38YLR360W STU1P38198 1513 aa1.81□□□□□ -2.12
VPS38YLR360W CWP1P28319 239 aa1.81□□□□□ -2.12
VPS38YLR360W ARC19P33204 171 aaKnown RBP1.81□□□□□ -2.12
VPS38YLR360W TCD1P38756 429 aa1.81□□□□□ -2.12
VPS38YLR360W TIF34P40217 347 aaKnown RBP1.81□□□□□ -2.12
VPS38YLR360W YRB1P41920 201 aaKnown RBP1.81□□□□□ -2.12
VPS38YLR360W RTC4P53850 401 aa1.81□□□□□ -2.12
VPS38YLR360W PEX12Q04370 399 aa1.81□□□□□ -2.12
VPS38YLR360W BPT1P14772 1559 aa1.81□□□□□ -2.12
VPS38YLR360W KOG1P38873 1557 aa1.81□□□□□ -2.12
VPS38YLR360W SWI1P09547 1314 aa1.81□□□□□ -2.12
VPS38YLR360W SSK22P25390 1331 aaPredicted RBP1.81□□□□□ -2.12
VPS38YLR360W ROM2P51862 1356 aaKnown RBP1.8□□□□□ -2.12
VPS38YLR360W SPO14P36126 1683 aa1.8□□□□□ -2.12
VPS38YLR360W SSA3P09435 649 aaKnown RBP1.8□□□□□ -2.12
VPS38YLR360W SEC14P24280 304 aaKnown RBP1.8□□□□□ -2.12
VPS38YLR360W ACP1P32463 125 aa1.8□□□□□ -2.12
VPS38YLR360W COA1P40452 197 aa1.8□□□□□ -2.12
VPS38YLR360W YJL027CP47063 138 aaPredicted RBP1.8□□□□□ -2.12
VPS38YLR360W GPI8P49018 411 aa1.8□□□□□ -2.12
VPS38YLR360W ORM1P53224 222 aa1.8□□□□□ -2.12
VPS38YLR360W ERV25P54837 211 aaKnown RBP1.8□□□□□ -2.12
VPS38YLR360W KRE28Q04431 385 aa1.8□□□□□ -2.12
Retrieved 100 of 5,963 RNA–protein pairs in 35.1 ms