RNA–Protein interactions for RNA: YFL008W

SMC1, Transcript of Subunit of the multiprotein cohesin complex, yeast

Gene SMC1, Length 3,678 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SMC1	YFL008W	ASI3	P53983	676 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	KTR6	P54070	446 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	YDR541C	Q03049	344 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	YML079W	Q03629	201 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	ENT5	Q03769	411 aa	Known RBP	0.88	□□□□□ -2.27
SMC1	YFL008W	NAT4	Q04751	285 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	KAP95	Q06142	861 aa	Known RBP	0.88	□□□□□ -2.27
SMC1	YFL008W	PEX30	Q06169	523 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	PML1	Q07930	204 aa	Predicted RBP	0.88	□□□□□ -2.27
SMC1	YFL008W	YPL257W	Q08974	193 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	YAL063C-A	Q3E791	96 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	RAD7	P06779	565 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	SEC4	P07560	215 aa	Known RBP	0.88	□□□□□ -2.27
SMC1	YFL008W	GPA2	P10823	449 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	YAK1	P14680	807 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	ANB1	P19211	157 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	IDP1	P21954	428 aa	Known RBP	0.88	□□□□□ -2.27
SMC1	YFL008W	MXR2	P25566	168 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	POF1	P25576	258 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	PHO91	P27514	894 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	PRR1	P28708	518 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	LDS1	P31379	325 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	GDH2	P33327	1092 aa	Known RBP	0.88	□□□□□ -2.27
SMC1	YFL008W	TAF14	P35189	244 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	YKL075C	P36083	450 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	SRP72	P38688	640 aa	Known RBP	0.88	□□□□□ -2.27
SMC1	YFL008W	YHI9	P38765	294 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	BIG1	P38813	335 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	NPT1	P39683	429 aa	Known RBP	0.88	□□□□□ -2.27
SMC1	YFL008W	SCC4	P40090	624 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	MAM33	P40513	266 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	GCD14	P46959	383 aa	Predicted RBP	0.88	□□□□□ -2.27
SMC1	YFL008W	NAS6	P50086	228 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	UBC12	P52491	188 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	MRH4	P53166	561 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	CDH1	P53197	566 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	IRC4	Q03036	179 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	APC4	Q04601	652 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	SYC1	Q08553	188 aa	Predicted RBP	0.88	□□□□□ -2.27
SMC1	YFL008W	DDC1	Q08949	612 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	FCF2	Q12035	217 aa	Predicted RBP	0.88	□□□□□ -2.27
SMC1	YFL008W	MDM32	Q12171	622 aa		0.88	□□□□□ -2.27
SMC1	YFL008W	THP2	O13539	261 aa	Known RBP	0.87	□□□□□ -2.27
SMC1	YFL008W	REP2	P03872	296 aa		0.87	□□□□□ -2.27
SMC1	YFL008W	BCY1	P07278	416 aa	Known RBP	0.87	□□□□□ -2.27
SMC1	YFL008W	SPS2	P08459	502 aa		0.87	□□□□□ -2.27
SMC1	YFL008W	SSA3	P09435	649 aa	Known RBP	0.87	□□□□□ -2.27
SMC1	YFL008W	STF2	P16965	84 aa		0.87	□□□□□ -2.27
SMC1	YFL008W	RPS1B	P23248	255 aa	Known RBP	0.87	□□□□□ -2.27
SMC1	YFL008W	YCR025C	P25352	136 aa		0.87	□□□□□ -2.27
SMC1	YFL008W	VPH1	P32563	840 aa	Known RBP	0.87	□□□□□ -2.27
SMC1	YFL008W	GCG1	P32656	232 aa	Known RBP	0.87	□□□□□ -2.27
SMC1	YFL008W	RXT2	P38255	430 aa		0.87	□□□□□ -2.27
SMC1	YFL008W	SOP4	P39543	234 aa	Predicted RBP	0.87	□□□□□ -2.27
SMC1	YFL008W	YER184C	P39961	794 aa		0.87	□□□□□ -2.27
SMC1	YFL008W	RPL13B	P40212	199 aa	Known RBP	0.87	□□□□□ -2.27
SMC1	YFL008W	AGE2	P40529	298 aa		0.87	□□□□□ -2.27
SMC1	YFL008W	TIR3	P40552	269 aa		0.87	□□□□□ -2.27
SMC1	YFL008W	MOB2	P43563	287 aa		0.87	□□□□□ -2.27
SMC1	YFL008W	YFR018C	P43599	363 aa		0.87	□□□□□ -2.27
SMC1	YFL008W	MNN5	P46982	586 aa		0.87	□□□□□ -2.27
SMC1	YFL008W	HHO1	P53551	258 aa		0.87	□□□□□ -2.27
SMC1	YFL008W	YNR062C	P53748	327 aa		0.87	□□□□□ -2.27
SMC1	YFL008W	NOP13	P53883	403 aa	Known RBP RIP-Chip data	0.87	□□□□□ -2.27	not detected
SMC1	YFL008W	YNL143C	P53908	130 aa		0.87	□□□□□ -2.27
SMC1	YFL008W	EOS1	P53938	366 aa		0.87	□□□□□ -2.27
SMC1	YFL008W	DIG2	Q03373	323 aa	Known RBP	0.87	□□□□□ -2.27
SMC1	YFL008W	CSI1	Q04368	295 aa		0.87	□□□□□ -2.27
SMC1	YFL008W	SDH7	Q04401	133 aa		0.87	□□□□□ -2.27
SMC1	YFL008W	GPN3	Q06543	272 aa		0.87	□□□□□ -2.27
SMC1	YFL008W	MEU1	Q07938	337 aa	Known RBP RIP-Chip data	0.87	□□□□□ -2.27	not detected
SMC1	YFL008W	RRP40	Q08285	240 aa	Known RBP	0.87	□□□□□ -2.27
SMC1	YFL008W	YPR063C	Q12160	140 aa		0.87	□□□□□ -2.27
SMC1	YFL008W	YOL107W	Q12239	342 aa		0.87	□□□□□ -2.27
SMC1	YFL008W	RPL13A	Q12690	199 aa	Predicted RBP	0.87	□□□□□ -2.27
SMC1	YFL008W	MHF1	Q3E835	90 aa		0.87	□□□□□ -2.27
SMC1	YFL008W	YOR304C-A	O14468	76 aa		0.87	□□□□□ -2.27
SMC1	YFL008W	DST1	P07273	309 aa		0.87	□□□□□ -2.27
SMC1	YFL008W	RPC40	P07703	335 aa	Known RBP	0.87	□□□□□ -2.27
SMC1	YFL008W	MET2	P08465	486 aa		0.87	□□□□□ -2.27
SMC1	YFL008W	RPS23A	P0CX29	145 aa	Known RBP	0.87	□□□□□ -2.27
SMC1	YFL008W	RPS23B	P0CX30	145 aa		0.87	□□□□□ -2.27
SMC1	YFL008W	HAP3	P13434	144 aa		0.87	□□□□□ -2.27
SMC1	YFL008W	FUS3	P16892	353 aa	Known RBP	0.87	□□□□□ -2.27
SMC1	YFL008W	FUR1	P18562	216 aa	Known RBP	0.87	□□□□□ -2.27
SMC1	YFL008W	SEC59	P20048	519 aa		0.87	□□□□□ -2.27
SMC1	YFL008W	DAL82	P21705	255 aa		0.87	□□□□□ -2.27
SMC1	YFL008W	TRX1	P22217	103 aa	Known RBP	0.87	□□□□□ -2.27
SMC1	YFL008W	PBN1	P25580	416 aa		0.87	□□□□□ -2.27
SMC1	YFL008W	CIN8	P27895	1000 aa		0.87	□□□□□ -2.27
SMC1	YFL008W	PEX3	P28795	441 aa		0.87	□□□□□ -2.27
SMC1	YFL008W	IDH1	P28834	360 aa	Known RBP RIP-Chip data	0.87	□□□□□ -2.27	not detected
SMC1	YFL008W	SPT14	P32363	452 aa		0.87	□□□□□ -2.27
SMC1	YFL008W	KRE6	P32486	720 aa		0.87	□□□□□ -2.27
SMC1	YFL008W	MRPL3	P36516	390 aa		0.87	□□□□□ -2.27
SMC1	YFL008W	PCH2	P38126	564 aa		0.87	□□□□□ -2.27
SMC1	YFL008W	FIG1	P38224	298 aa		0.87	□□□□□ -2.27
SMC1	YFL008W	MBA1	P38300	278 aa		0.87	□□□□□ -2.27
SMC1	YFL008W	AME1	P38313	324 aa		0.87	□□□□□ -2.27
SMC1	YFL008W	CUE1	P38428	203 aa		0.87	□□□□□ -2.27

Retrieved 100 of 5,963 RNA–protein pairs in 32.7 ms